KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:20:40 2014 Check: 00 ..
Name: ENSP00000368964/1-773 Len: 803 Check: 6495 Weight: 1.00
Name: ENSBTAP00000023440/1-629 Len: 803 Check: 8589 Weight: 1.00
Name: ENSTTRP00000001887/1-767 Len: 803 Check: 4140 Weight: 1.00
Name: BACU005519/1-753 Len: 803 Check: 1572 Weight: 1.00
Name: bmy_00612T0/1-397 Len: 803 Check: 9568 Weight: 1.00
//
1 50
ENSP00000368964/1-773 MERGGGGSGT GSRPEGTARG TSLPGKIAEP GAVRTSQPNY RPQGMEGFLK
ENSBTAP00000023440/1-629 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000001887/1-767 -MEHGVDCGA AAGTEGSTRA PPLPGKMAEP GAVRTSPPIH RPSGMDGFLK
BACU005519/1-753 --------ME AVLLVAVERG RPFWTVVAGT WCRVETVKGM RKAGMDGFLK
bmy_00612T0/1-397 ---------- ---------- ---------- ---------- ----------
51 100
ENSP00000368964/1-773 SDERQRLAKE RREEREKCLA AREQQILEKQ KRARLQYEKQ MEERWRKLEE
ENSBTAP00000023440/1-629 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000001887/1-767 SDERQRLAKE RREEREKCLA AREQQILEKQ KRAKLQYEKQ IEERWRKLEE
BACU005519/1-753 SDERQRLAKE RREEREKCLA AREQQILEKQ KRAKLQYEKQ IEERWRKLGE
bmy_00612T0/1-397 ---------- ---------- ---------- ---------- ----------
101 150
ENSP00000368964/1-773 QRQREDQKRA AVEEKRKQKL REEEERLEAM MRRSLERTQQ LELKKKYSW-
ENSBTAP00000023440/1-629 ---------- ---------- ---QERLEAM MRRSLERSQQ LELKKKCSSG
ENSTTRP00000001887/1-767 QRQREAQKRA AVEEKRKQKL REEEERLEAM MRRSLERTQQ LELKKKCSW-
BACU005519/1-753 QRQREEQKRA AVEEKRRQKL REEEERLEAM MRRSLERTQQ LELKKKCSW-
bmy_00612T0/1-397 ---------- ---------- ---------- ---------- ----------
151 200
ENSP00000368964/1-773 GAPLAIGPGG HDA-CDKLST STMSLPKPTE PPMNKRLSSS TVAISYSPDR
ENSBTAP00000023440/1-629 GASLAAGPGG RDGESGNTPP PPLGLAASTL PL-----DPG TTAAAAESTN
ENSTTRP00000001887/1-767 GASLAAGPGG RDA-CDKLST STMNLPKQTE PPMSKRLSSS TATMSYSPDR
BACU005519/1-753 GASLAAGPGG GNGESGNTPP PPLGLAASTL PP-----DPG TTAAAAESTN
bmy_00612T0/1-397 ---------- ---------- ---------- ---------- ----------
201 250
ENSP00000368964/1-773 AHHMHLSPME AILVSRLLTP TQSSLARSRA SVMLSGQAND SVFHVCPRLA
ENSBTAP00000023440/1-629 AC-DKLSTST MNLPKQTEPP MSKRLSSSTA AISYSPDR-- ---------A
ENSTTRP00000001887/1-767 AHRTHLSPME TFLVMRLLTP TQASLARSRS ALMLSEQASH SVSHACPRVA
BACU005519/1-753 AHRTHLSPME TFLVMRLLTP TQASLARSRS ALMLSEQASH S--------A
bmy_00612T0/1-397 ---------- ---------- ---------- ---------- ----------
251 300
ENSP00000368964/1-773 PLGPLNPSYK SSPTRNIEKK KATSTSTSGA GDVGKEALSG GEASLVEKVK
ENSBTAP00000023440/1-629 PAGSLKSSYK SSPTRNVERK K--IASTSGG GDAGKGAPAG VEASPTEKMK
ENSTTRP00000001887/1-767 PAGPLKSSYK SSPTRNAEKK K--TTSTSGV GDAGKGAPAG AEASPTEKMK
BACU005519/1-753 PAGPLKSSYK SSPTRNAEKK K--TTSTSGV GDAGKGAPAG AEASPTEKTK
bmy_00612T0/1-397 ---------- ---------- ---------- ---------- ----------
301 350
ENSP00000368964/1-773 RGQRTATSLP VVNFGSPLRR CEFSGGIPKR PSSPVISKTA TKAYPQSPKT
ENSBTAP00000023440/1-629 RGPRATASVP SVGLMSPLR- -----SISKR SSSPVTSKAT SKAYPQSPKN
ENSTTRP00000001887/1-767 RGPKTTTSVP SVGLMSPLRR CDFPAGVSKR SSSPVTPKAT SKAYPQSPKN
BACU005519/1-753 RGPRTTTSVP SVGLMSPLRR CDFPAGVSKR SSSPVTPKAT SKAYPQSPKN
bmy_00612T0/1-397 ---------- ---------- ---------- -------RAT SKAYPQSPKN
351 400
ENSP00000368964/1-773 TKPPYPGSPV KYRLPALSGQ DMPKRKAEKE KSNKEREGTL AQQAAGPQGE
ENSBTAP00000023440/1-629 TKPPYPGSPV KYRLPSFSGQ ETPKKKADKE KSNKEKEGTL PQQAASSPKE
ENSTTRP00000001887/1-767 VKPPYPGSPV KYRLPAFSGQ ETPKKKAEKE KSNKEREGSL AQQAAGPPGE
BACU005519/1-753 VKPPYPGSPV KYRFPTFSGQ ETPKKKAEKE KSNKEREGAL AQQAAGPPGE
bmy_00612T0/1-397 VKPPYPGSPV KYRLPAFSGQ ETPKKKAEKE KSNKEREGAL AQQAAGPPGE
401 450
ENSP00000368964/1-773 EALEKHVVDK HAS---EKHA AAAGGKAENS --AALGKPTA GTTDAGEAAK
ENSBTAP00000023440/1-629 EVPEKHVADR QATEKHEKHE ATA-GKAKGG RDAASGKPTA GTTDAGEATK
ENSTTRP00000001887/1-767 EAPEKHVADR HAT---EKHE AAA-GKAEGG --GASWKPTA GTTDAGEATK
BACU005519/1-753 EAPEKHVAGR HAT---EKHE AAA-GKAEGG --GASWKPTA GTTDAGEAAK
bmy_00612T0/1-397 EAPEKHVADR HAT---EKHE AAA-GKAEGG --GASWKPTA GTTDAGEATK
451 500
ENSP00000368964/1-773 ILAEKRRQAR LQKEQEEQER LEKEEQD--- --RLEREELK RKAEEERLRL
ENSBTAP00000023440/1-629 ILSEKRRQAR LQKEQEEQER LEKEKQD--- -KRLEREELK RKAEEERLRL
ENSTTRP00000001887/1-767 MLAEKRRQAR LQKEQEQQER LEKEEQD--- --RLEREELQ RKAEGERLRL
BACU005519/1-753 MLAEKRRQAR LQKEQEEQER LEKEEQDSYV LKRLEREELQ RKAEEERPRL
bmy_00612T0/1-397 MLAEKRRQAR LQKEQEEQER LEKEEQD--- --RLEREELQ RKAEEERPRL
501 550
ENSP00000368964/1-773 EEEARKQEEE RKRQEEEKKK QEGEEKRKAG EEAKRKAEEE LLL-----KE
ENSBTAP00000023440/1-629 EE-ARKQEEE KKHLEE---- ---EEKRKVA EEAKRKAKEA LLLKEEQEKE
ENSTTRP00000001887/1-767 EEAARKQEEE KKRQEE---- ---EEKRKAA EEAKRRAKEE LLLKEEQEKE
BACU005519/1-753 EEAARKQEEE KKRQEE---- ---EEKRKAA EEAKRRAKEE LLLKEEQEKE
bmy_00612T0/1-397 EEAARKQEEE KKRQEE---- ---EEKRKAA EEAKQRAKEE LLLKEEQEKE
551 600
ENSP00000368964/1-773 KQEQEKQEKA MIEKQKEAAE TKAREVAEQM RLEREQIMLQ IEQERLERKK
ENSBTAP00000023440/1-629 KQEKEKQEKA MIVKQKEAAE AKAQEAAKQM RLKREQIMLQ MEQERLERKK
ENSTTRP00000001887/1-767 KQEKEKQEKA MIEKQKEAAE AKAQEAAKQM RLEREQIMLQ IEQERLERKK
BACU005519/1-753 KQEKEKQEKA MIEKQKEAAE AKAQEAAKQM RLEREQIMLQ IEQERLERKK
bmy_00612T0/1-397 KQEKEKQEKA MIEKQKEAAE AKAQEAAKQM RLEREQIMLQ IEQERLERKK
601 650
ENSP00000368964/1-773 RIDEIMKRTR KSDVSPQVKK EDPKVGVQPA VCVEKKTKLV VPNKMEINGL
ENSBTAP00000023440/1-629 RIDEIMKRTR KSDVSLEVKK EDPKVELQSA LCVENKTEPM VPNKIEISVL
ENSTTRP00000001887/1-767 RIDEIMKRTR KSDVSLEVKK EDPKVELQPA VCVENKTKPV VPNKIEINGL
BACU005519/1-753 RIDEIMKRTR KSDVSLEVKK EDPKVELQPA VCVENKTKPV VPNKIEINGL
bmy_00612T0/1-397 RIDEIMKRTR KSDVSLEVKK EDPKVELQPA VCVENKTKXV VPNKIEINGL
651 700
ENSP00000368964/1-773 NTCQEVNGVD HAAPETYPQD IFSNGLKPAG GLIHLDALDG KSNSLDDSTE
ENSBTAP00000023440/1-629 NTFQEVNVVE HAALETFPQD VFTDELKPVE GLVHLDTLDG KSNSLDDSTE
ENSTTRP00000001887/1-767 NTCQEVNGVE RAAPETFPQD VFTNGLKPVG GLVHLDALDG KSNSLDDSTE
BACU005519/1-753 NTCQEVNGVE RAAPETFPQD VFANGLKPGG GLVHLDTLDG KSNSLDDSTE
bmy_00612T0/1-397 NTCQEVNGVE RAAPETFPQD VFANGLKPGG GLVHLDALDG KSNSLDDSTE
701 750
ENSP00000368964/1-773 EVQSMDVSPV SKEELISIPE FSPVSEMIPG VSLDQNGTGN ARALQDLLDF
ENSBTAP00000023440/1-629 EVQSMDMSPV SKEELISIPE FSPVSEMIPG VSLDQNGTGN ARALQDLLDF
ENSTTRP00000001887/1-767 EVQSMDVSPV SKEELISIPE FSPVSEMIPG VSLDQNGTGN ARALQDLLDF
BACU005519/1-753 EVQSMDVSPV SKEELISIPE FSPVSEMIPG VSLDQNGTGN ARALQDLLDF
bmy_00612T0/1-397 EVQSMDV--- ---------- ---------- ---------- ----------
751 800
ENSP00000368964/1-773 TGPPTFPKRS SENLSLDDCN KNLIEGFNSP GQETPLNTFC ----------
ENSBTAP00000023440/1-629 TGPPIFPKRS SENLSLDDCN KNLIEGFNSP GQENTLNTFC ----------
ENSTTRP00000001887/1-767 TGPPIFPKRS SENLSLDDCN KNLIEGFNSP GQENTLNTFC ----------
BACU005519/1-753 TGPPIFPKRS SENLSLDDCN KNLIEGFNSP GQENTLNTFC ----------
bmy_00612T0/1-397 --------RS SENLSLDDCN KNLIEGFNSP GQENTLNTFC GVWRTHEAAG
801 850
ENSP00000368964/1-773 ---
ENSBTAP00000023440/1-629 ---
ENSTTRP00000001887/1-767 ---
BACU005519/1-753 ---
bmy_00612T0/1-397 SQI