KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:40 2014 Check: 00 .. Name: ENSP00000368964/1-773 Len: 803 Check: 6495 Weight: 1.00 Name: ENSBTAP00000023440/1-629 Len: 803 Check: 8589 Weight: 1.00 Name: ENSTTRP00000001887/1-767 Len: 803 Check: 4140 Weight: 1.00 Name: BACU005519/1-753 Len: 803 Check: 1572 Weight: 1.00 Name: bmy_00612T0/1-397 Len: 803 Check: 9568 Weight: 1.00 // 1 50 ENSP00000368964/1-773 MERGGGGSGT GSRPEGTARG TSLPGKIAEP GAVRTSQPNY RPQGMEGFLK ENSBTAP00000023440/1-629 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001887/1-767 -MEHGVDCGA AAGTEGSTRA PPLPGKMAEP GAVRTSPPIH RPSGMDGFLK BACU005519/1-753 --------ME AVLLVAVERG RPFWTVVAGT WCRVETVKGM RKAGMDGFLK bmy_00612T0/1-397 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000368964/1-773 SDERQRLAKE RREEREKCLA AREQQILEKQ KRARLQYEKQ MEERWRKLEE ENSBTAP00000023440/1-629 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001887/1-767 SDERQRLAKE RREEREKCLA AREQQILEKQ KRAKLQYEKQ IEERWRKLEE BACU005519/1-753 SDERQRLAKE RREEREKCLA AREQQILEKQ KRAKLQYEKQ IEERWRKLGE bmy_00612T0/1-397 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000368964/1-773 QRQREDQKRA AVEEKRKQKL REEEERLEAM MRRSLERTQQ LELKKKYSW- ENSBTAP00000023440/1-629 ---------- ---------- ---QERLEAM MRRSLERSQQ LELKKKCSSG ENSTTRP00000001887/1-767 QRQREAQKRA AVEEKRKQKL REEEERLEAM MRRSLERTQQ LELKKKCSW- BACU005519/1-753 QRQREEQKRA AVEEKRRQKL REEEERLEAM MRRSLERTQQ LELKKKCSW- bmy_00612T0/1-397 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000368964/1-773 GAPLAIGPGG HDA-CDKLST STMSLPKPTE PPMNKRLSSS TVAISYSPDR ENSBTAP00000023440/1-629 GASLAAGPGG RDGESGNTPP PPLGLAASTL PL-----DPG TTAAAAESTN ENSTTRP00000001887/1-767 GASLAAGPGG RDA-CDKLST STMNLPKQTE PPMSKRLSSS TATMSYSPDR BACU005519/1-753 GASLAAGPGG GNGESGNTPP PPLGLAASTL PP-----DPG TTAAAAESTN bmy_00612T0/1-397 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000368964/1-773 AHHMHLSPME AILVSRLLTP TQSSLARSRA SVMLSGQAND SVFHVCPRLA ENSBTAP00000023440/1-629 AC-DKLSTST MNLPKQTEPP MSKRLSSSTA AISYSPDR-- ---------A ENSTTRP00000001887/1-767 AHRTHLSPME TFLVMRLLTP TQASLARSRS ALMLSEQASH SVSHACPRVA BACU005519/1-753 AHRTHLSPME TFLVMRLLTP TQASLARSRS ALMLSEQASH S--------A bmy_00612T0/1-397 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000368964/1-773 PLGPLNPSYK SSPTRNIEKK KATSTSTSGA GDVGKEALSG GEASLVEKVK ENSBTAP00000023440/1-629 PAGSLKSSYK SSPTRNVERK K--IASTSGG GDAGKGAPAG VEASPTEKMK ENSTTRP00000001887/1-767 PAGPLKSSYK SSPTRNAEKK K--TTSTSGV GDAGKGAPAG AEASPTEKMK BACU005519/1-753 PAGPLKSSYK SSPTRNAEKK K--TTSTSGV GDAGKGAPAG AEASPTEKTK bmy_00612T0/1-397 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000368964/1-773 RGQRTATSLP VVNFGSPLRR CEFSGGIPKR PSSPVISKTA TKAYPQSPKT ENSBTAP00000023440/1-629 RGPRATASVP SVGLMSPLR- -----SISKR SSSPVTSKAT SKAYPQSPKN ENSTTRP00000001887/1-767 RGPKTTTSVP SVGLMSPLRR CDFPAGVSKR SSSPVTPKAT SKAYPQSPKN BACU005519/1-753 RGPRTTTSVP SVGLMSPLRR CDFPAGVSKR SSSPVTPKAT SKAYPQSPKN bmy_00612T0/1-397 ---------- ---------- ---------- -------RAT SKAYPQSPKN 351 400 ENSP00000368964/1-773 TKPPYPGSPV KYRLPALSGQ DMPKRKAEKE KSNKEREGTL AQQAAGPQGE ENSBTAP00000023440/1-629 TKPPYPGSPV KYRLPSFSGQ ETPKKKADKE KSNKEKEGTL PQQAASSPKE ENSTTRP00000001887/1-767 VKPPYPGSPV KYRLPAFSGQ ETPKKKAEKE KSNKEREGSL AQQAAGPPGE BACU005519/1-753 VKPPYPGSPV KYRFPTFSGQ ETPKKKAEKE KSNKEREGAL AQQAAGPPGE bmy_00612T0/1-397 VKPPYPGSPV KYRLPAFSGQ ETPKKKAEKE KSNKEREGAL AQQAAGPPGE 401 450 ENSP00000368964/1-773 EALEKHVVDK HAS---EKHA AAAGGKAENS --AALGKPTA GTTDAGEAAK ENSBTAP00000023440/1-629 EVPEKHVADR QATEKHEKHE ATA-GKAKGG RDAASGKPTA GTTDAGEATK ENSTTRP00000001887/1-767 EAPEKHVADR HAT---EKHE AAA-GKAEGG --GASWKPTA GTTDAGEATK BACU005519/1-753 EAPEKHVAGR HAT---EKHE AAA-GKAEGG --GASWKPTA GTTDAGEAAK bmy_00612T0/1-397 EAPEKHVADR HAT---EKHE AAA-GKAEGG --GASWKPTA GTTDAGEATK 451 500 ENSP00000368964/1-773 ILAEKRRQAR LQKEQEEQER LEKEEQD--- --RLEREELK RKAEEERLRL ENSBTAP00000023440/1-629 ILSEKRRQAR LQKEQEEQER LEKEKQD--- -KRLEREELK RKAEEERLRL ENSTTRP00000001887/1-767 MLAEKRRQAR LQKEQEQQER LEKEEQD--- --RLEREELQ RKAEGERLRL BACU005519/1-753 MLAEKRRQAR LQKEQEEQER LEKEEQDSYV LKRLEREELQ RKAEEERPRL bmy_00612T0/1-397 MLAEKRRQAR LQKEQEEQER LEKEEQD--- --RLEREELQ RKAEEERPRL 501 550 ENSP00000368964/1-773 EEEARKQEEE RKRQEEEKKK QEGEEKRKAG EEAKRKAEEE LLL-----KE ENSBTAP00000023440/1-629 EE-ARKQEEE KKHLEE---- ---EEKRKVA EEAKRKAKEA LLLKEEQEKE ENSTTRP00000001887/1-767 EEAARKQEEE KKRQEE---- ---EEKRKAA EEAKRRAKEE LLLKEEQEKE BACU005519/1-753 EEAARKQEEE KKRQEE---- ---EEKRKAA EEAKRRAKEE LLLKEEQEKE bmy_00612T0/1-397 EEAARKQEEE KKRQEE---- ---EEKRKAA EEAKQRAKEE LLLKEEQEKE 551 600 ENSP00000368964/1-773 KQEQEKQEKA MIEKQKEAAE TKAREVAEQM RLEREQIMLQ IEQERLERKK ENSBTAP00000023440/1-629 KQEKEKQEKA MIVKQKEAAE AKAQEAAKQM RLKREQIMLQ MEQERLERKK ENSTTRP00000001887/1-767 KQEKEKQEKA MIEKQKEAAE AKAQEAAKQM RLEREQIMLQ IEQERLERKK BACU005519/1-753 KQEKEKQEKA MIEKQKEAAE AKAQEAAKQM RLEREQIMLQ IEQERLERKK bmy_00612T0/1-397 KQEKEKQEKA MIEKQKEAAE AKAQEAAKQM RLEREQIMLQ IEQERLERKK 601 650 ENSP00000368964/1-773 RIDEIMKRTR KSDVSPQVKK EDPKVGVQPA VCVEKKTKLV VPNKMEINGL ENSBTAP00000023440/1-629 RIDEIMKRTR KSDVSLEVKK EDPKVELQSA LCVENKTEPM VPNKIEISVL ENSTTRP00000001887/1-767 RIDEIMKRTR KSDVSLEVKK EDPKVELQPA VCVENKTKPV VPNKIEINGL BACU005519/1-753 RIDEIMKRTR KSDVSLEVKK EDPKVELQPA VCVENKTKPV VPNKIEINGL bmy_00612T0/1-397 RIDEIMKRTR KSDVSLEVKK EDPKVELQPA VCVENKTKXV VPNKIEINGL 651 700 ENSP00000368964/1-773 NTCQEVNGVD HAAPETYPQD IFSNGLKPAG GLIHLDALDG KSNSLDDSTE ENSBTAP00000023440/1-629 NTFQEVNVVE HAALETFPQD VFTDELKPVE GLVHLDTLDG KSNSLDDSTE ENSTTRP00000001887/1-767 NTCQEVNGVE RAAPETFPQD VFTNGLKPVG GLVHLDALDG KSNSLDDSTE BACU005519/1-753 NTCQEVNGVE RAAPETFPQD VFANGLKPGG GLVHLDTLDG KSNSLDDSTE bmy_00612T0/1-397 NTCQEVNGVE RAAPETFPQD VFANGLKPGG GLVHLDALDG KSNSLDDSTE 701 750 ENSP00000368964/1-773 EVQSMDVSPV SKEELISIPE FSPVSEMIPG VSLDQNGTGN ARALQDLLDF ENSBTAP00000023440/1-629 EVQSMDMSPV SKEELISIPE FSPVSEMIPG VSLDQNGTGN ARALQDLLDF ENSTTRP00000001887/1-767 EVQSMDVSPV SKEELISIPE FSPVSEMIPG VSLDQNGTGN ARALQDLLDF BACU005519/1-753 EVQSMDVSPV SKEELISIPE FSPVSEMIPG VSLDQNGTGN ARALQDLLDF bmy_00612T0/1-397 EVQSMDV--- ---------- ---------- ---------- ---------- 751 800 ENSP00000368964/1-773 TGPPTFPKRS SENLSLDDCN KNLIEGFNSP GQETPLNTFC ---------- ENSBTAP00000023440/1-629 TGPPIFPKRS SENLSLDDCN KNLIEGFNSP GQENTLNTFC ---------- ENSTTRP00000001887/1-767 TGPPIFPKRS SENLSLDDCN KNLIEGFNSP GQENTLNTFC ---------- BACU005519/1-753 TGPPIFPKRS SENLSLDDCN KNLIEGFNSP GQENTLNTFC ---------- bmy_00612T0/1-397 --------RS SENLSLDDCN KNLIEGFNSP GQENTLNTFC GVWRTHEAAG 801 850 ENSP00000368964/1-773 --- ENSBTAP00000023440/1-629 --- ENSTTRP00000001887/1-767 --- BACU005519/1-753 --- bmy_00612T0/1-397 SQI