KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:42 2014 Check: 00 .. Name: ENSP00000282701/1-472 Len: 557 Check: 9568 Weight: 1.00 Name: ENSBTAP00000023468/1-475 Len: 557 Check: 4462 Weight: 1.00 Name: BACU000827/1-556 Len: 557 Check: 2891 Weight: 1.00 Name: bmy_15273T0/1-375 Len: 557 Check: 8919 Weight: 1.00 Name: ENSTTRP00000003765/1-475 Len: 557 Check: 3748 Weight: 1.00 // 1 50 ENSP00000282701/1-472 MAGASRLLFL WLGCFCVSLA QGERPKPPFP ELRKAVPGDR TAGGGPDSEL ENSBTAP00000023468/1-475 MAGARGLLHL WLSCLCVSLA QGQRLRQPFP ELRVAVPADR AAGGGPESPL BACU000827/1-556 MAGARRLLCL WLSCLCVSLA HGQRLEQHFP ELREPVPGDR AAGGGPDPLP bmy_15273T0/1-375 ------FFFF FF-------- ---------- ---------- ---------- ENSTTRP00000003765/1-475 MAGARRLLHL WLGCLCVSLA HGQRLKQHFP ELREPVPGDR TAGGGPDPLP 51 100 ENSP00000282701/1-472 QPQDKVSEHM LRLYDRYS-- -TVQAARTPG SLEGGSQPWR PRLLREGNTV ENSBTAP00000023468/1-475 QPLDQVSEHM LRLYDRYS-G GRTEEARTPG NSERGSPSLR PQPLREGNTV BACU000827/1-556 QPLDKVSEHM LRLYDRYSGG GRAEAARTPG SSERGSPPRL PQPLREGNTV bmy_15273T0/1-375 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003765/1-475 QPLDKVSEHM LRLYDRYRGG GRAEAARTPG SSERGSPPLL PQPLSEGNTV 101 150 ENSP00000282701/1-472 RSFRAA---- ---------- ---------- ---------A AETLERKGLY ENSBTAP00000023468/1-475 RSFRAG---- ---------- ---------- ---------A AGMLENKELH BACU000827/1-556 RSFRAAETFL RPPAALRAPR SCHTRIPPKV YLRFRIHRFQ IGTLENEKLH bmy_15273T0/1-375 ---------- ---------- ---------- ---------F LGTLENETLH ENSTTRP00000003765/1-475 RSFRAA---- ---------- ---------- ---------A AGTLENEKLH 151 200 ENSP00000282701/1-472 IFNLTSLTKS ENILSATLYF CIGELGNISL SCPVSGGCSH HAQRKHIQID ENSBTAP00000023468/1-475 IFNLTSLTKS ENILSATLYF YIRELINISL SCPVSQECSH HAQRKHIQID BACU000827/1-556 IFNLTSLTKS ENILSATLYF YIGELINISL SCPVSQGCSH HTQRKHIQIE bmy_15273T0/1-375 IFNLTSLTKS ENILSATLYF YIGELINISL SCPVSQGCSH HTQRKHIQFD ENSTTRP00000003765/1-475 IFNLTSLTKS ENILSATLYF YIGELINISL SCPVSQGCSH HSQRKHIHIE 201 250 ENSP00000282701/1-472 LSAWTLKFSR NQSQLLGHLS VDMAKSHRDI MSWLSKDITQ LLRKAKENEE ENSBTAP00000023468/1-475 LSAWILKSSG NQSQLLGHLS VDGGKPHRDF VSWLSKDITQ LLRKAKENEE BACU000827/1-556 LSTWILKSTG NQSQLLGHLS VDGVKLHRDF VSWLSKDITQ LLRKAKENEE bmy_15273T0/1-375 LSTWILKSTR NQSQLLGHLS VDGAKRHRDF VSWLSKDITQ LLRKAKENEE ENSTTRP00000003765/1-475 LSTWILKSTG NQSQLLGHLS VDGAKLHRDF VSWLSKDITP LLRKAKENEE 251 300 ENSP00000282701/1-472 FLIGFNITSK GRQLPKRRLP FPEPYILVYA NDAAISEPES VVSSLQGHRN ENSBTAP00000023468/1-475 FLIGFNITTK GHQLPKKMTP SPEPYILVYA NDAAISEPES VVSSLQGHRN BACU000827/1-556 FLIGFNITSK GHQLPKKITP FPEPYILVYA NDIAISEPES VVSSLQGHRN bmy_15273T0/1-375 FLIGFNITSK GHQLPKKTTP FPEPYILVYA NDIAISEPES VVSSLQGHRN ENSTTRP00000003765/1-475 SLIGFNITSK GHQLPKKITP FPEPYILVYA NDIAISEPES VVSSLQGHRN 301 350 ENSP00000282701/1-472 FPTGTVPKWD SHIRAALSIE -RRKKRSTGV LLPLQNNELP GAEYQYKKDE ENSBTAP00000023468/1-475 FPTGAVPKLD SQSRSAPSIE RRRRKRSTGV LLPLQNNELP GAEYQYKEDE BACU000827/1-556 FLTGAVPKLD SHIRAALSTE -RRKKRSTGV LLPLQNNELP GAEYQYKEDG bmy_15273T0/1-375 FPTGAVPKLD SHIGAALSTE -RRKKRSTGV LLPLQNNELP GAEYQYKEDG ENSTTRP00000003765/1-475 FPTGAVPKLD SHIRAALSTE -RRKKRSAGV LLPLQNNELP GAEYQYKEDG 351 400 ENSP00000282701/1-472 VWEERKPYKT LQAQAPEKSK NKKKQRKGPH RKSQTLQFDE QTLKKARRKQ ENSBTAP00000023468/1-475 VWEERKPYKT LQTQPPDKSK NKKKQRKGPQ QKSQTLQFDE QTLKKARRKQ BACU000827/1-556 VWEERKPYKT LQTQPPEKSK NKKKQRKGPH QKSQTLQFDE QTLKKARRKQ bmy_15273T0/1-375 VWEERKPYKT LQTQPPEKSK NKKKQRKGPH QKSQTLQFDE QTLKKARRKQ ENSTTRP00000003765/1-475 VWEERKPYKT LQTQPPEKSK NKKKQRKGPH QKSQTLQFDE QTLKKARRKQ 401 450 ENSP00000282701/1-472 WIEPRNCARR YLKVDFADIG WSEWIISPKS FDAYYCSGAC QFPMPKSLKP ENSBTAP00000023468/1-475 WIEPRNCARR YLKVDFADIG WSEWIISPKS FDAYYCSGAC QFPMPKSLKP BACU000827/1-556 WIEPRNCARR YLKVDFADIG WSEWIISPKS FDAYYCSGAC QFPMPKSLKP bmy_15273T0/1-375 WIEPRNCARR YLKVDFADIG WSEWIXSPKS FDAYYCSGTC QFPMPKSLKP ENSTTRP00000003765/1-475 WIEPRNCARR YLKVDFADIG WSEWIISPKS FDAYYCSGAC QFPMPKSLKP 451 500 ENSP00000282701/1-472 SNHATIQSIV RAVGVVPGIP EPCCVPEKMS SLSILFFDEN KNVVLK---- ENSBTAP00000023468/1-475 SNHATIQSIV RAVGVVPGIP EPCCVPEKMS SLSILFFDEN KNVVLK---- BACU000827/1-556 SNHATIQSIV RAVGVVPGIP EPCCVPEKMS SLSILFFDEN KNVVLKDRGS bmy_15273T0/1-375 SNHATIQSIV RAVGVVPGIP EPCCVPEKMS SLSILFFDEN KNVVLK---- ENSTTRP00000003765/1-475 SNHATIQSIV RAVGVVPGIP EPCCVPEKMS SLSILFFDEN KNVVLK---- 501 550 ENSP00000282701/1-472 ---------- -----VYP-- ---------- ---------- -------NMT ENSBTAP00000023468/1-475 ---------- -----VYP-- ---------- ---------- -------NMT BACU000827/1-556 SSPGEDAPPQ DVSSAMFPLA KCGRSKAPFM ESSSWVTNVT EPPTPRINLH bmy_15273T0/1-375 ---------- -----VYP-- ---------- ---------- -------NMT ENSTTRP00000003765/1-475 ---------- -----VYP-- ---------- ---------- -------NMT 551 600 ENSP00000282701/1-472 VESCACR ENSBTAP00000023468/1-475 VESCACR BACU000827/1-556 ITYLEND bmy_15273T0/1-375 VESCACR ENSTTRP00000003765/1-475 VESCACR