KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:20:42 2014 Check: 00 .. Name: ENSBTAP00000023470/1-1033 Len: 1109 Check: 5473 Weight: 1.00 Name: ENSTTRP00000010699/1-1026 Len: 1109 Check: 9605 Weight: 1.00 Name: bmy_19174T0/1-708 Len: 1109 Check: 6140 Weight: 1.00 Name: BACU005742/1-773 Len: 1109 Check: 9356 Weight: 1.00 // 1 50 ENSBTAP00000023470/1-1033 MASESVKVVV RCRPMNQRER ELNCHPVVTV DSARGQCFIQ NPGAADQPPK ENSTTRP00000010699/1-1026 MASESVKVVV RCRPMNQREL ELNCQPVVTV DSARGQCFIQ NPGAVDQPPK bmy_19174T0/1-708 MASESVKVVV RCRPMNQREW ELNCQPVVTV DSARGQCFIQ NPGAVDQPPK BACU005742/1-773 MASESVKVVV RCRPMNQREW ELNCQPVVTV DSARGQCFIQ NPGAVDQPPK 51 100 ENSBTAP00000023470/1-1033 QFTFDGAYYM DHFTEQIYNE IAYPLVEGVT EGYNGTIFAY GQTGSGKSFT ENSTTRP00000010699/1-1026 QFTFDGAYYV DHFTEQIYNE IAYPLVEGVT EGYNGTIFAY GQTGSGKSFT bmy_19174T0/1-708 QFTFDGAYYM DHFTEQIYNE IAYPLVEGVT EGYNGTIFAY GQTGSGKSFT BACU005742/1-773 QFTFDGAYYM DHFTEQIYNE IAYPLVEGVT EGYNGTIFAY GQTGSGKSFT 101 150 ENSBTAP00000023470/1-1033 MQGLPDPACQ RGIIPRAFEH IFESVQCAEN TKFL-VRASY LEIYNEDVRD ENSTTRP00000010699/1-1026 MQGLPDPPCQ RGIIPRAFEH IFESVQXXXX XXXXSVRASY LEIYNEDVRD bmy_19174T0/1-708 MQGLPDPPCQ RGIIPRAFEH IFESVQCAEN TKFL-VRASY LEIYNEDVRD BACU005742/1-773 MQGLPDPPCQ RGIIPRAFEH IFESVQCAEN TKFL-VRASY LEIYNEDVRD 151 200 ENSBTAP00000023470/1-1033 LLGTDAKQKL ELKEHPEKGV YVKGLSMHTV HSVGQCERIM EAGWKNRSVG ENSTTRP00000010699/1-1026 LLGTDTKQKL ELKEHSEKGV YVKGLSMHTV HSVAQCERVM ETGWKNRSVG bmy_19174T0/1-708 LLGTDTKQKL ELKEHPEKGA YVKGLSMHTV HSVAQCERVM ETGWKNRSVG BACU005742/1-773 LLGTDTKQKL ELKEHLEKGA YVKGLSMHTV HSVAQCEHVM ETGWKNRSVG 201 250 ENSBTAP00000023470/1-1033 YTLMNKDSSR SHSIFTISIE IYAVDERGKD HLRAGKLNLV DLAGSERQSK ENSTTRP00000010699/1-1026 YTLMNKDSSR SHSIFTISIE IYAVDERGKD HLRAGKLNLV DLAGSERQSK bmy_19174T0/1-708 YTLMNKDSSR SHSIFTISIE IYAVDERGKD HLRAGKLNLV DLAGSERQSK BACU005742/1-773 YTLMNKDSSR SHSIFTISIE IYAVDERGKD HLRAGKLNLV DLAGSERQSK 251 300 ENSBTAP00000023470/1-1033 TGATGERLKE ATKINLSLSA LGNVISALVD GRCRHIPYRD SKLTRLLQDS ENSTTRP00000010699/1-1026 TGATGERLKE ATKINLSLSA LGNVISALVD GRCKHIPYRD SKLTRLLQDS bmy_19174T0/1-708 TGATGERLKE ATKINLSLSA LGNVISALVD GRCKHIPYRD SKLTRLLQDS BACU005742/1-773 TGATGERLKE ATKINLSLSA LGNVISALVD GRCKHIPYRD SKLTRLLQDS 301 350 ENSBTAP00000023470/1-1033 LGGNTKTLMV ACLSPADDNY DETLSTLRYA NRAKNIRNKP RINEDPKDAL ENSTTRP00000010699/1-1026 LGGNTKTLMV ACLSPADNNY AETLSTLRYA NRAKNIKNKP CINEDPKDAL bmy_19174T0/1-708 LGGNTKTLMV ACLSPADNNY DETLSTLRYA NRAKNIKNKP RINEDPKDAL BACU005742/1-773 LGGNTKTLMV ACLSPADNNY DETLSTLRYA NRAKNIKNKP RINEDPKDAL 351 400 ENSBTAP00000023470/1-1033 LREYQEEIKK LKAILAQQMG PGSLSALLNN QVPPSPVQIE EKPLSPPVMQ ENSTTRP00000010699/1-1026 LREYQEEIKK LRAILAQQMS PSNLSALLNN QVPPNPVQIE EKLLPPSVIQ bmy_19174T0/1-708 LREYQEEIKK LKAILAQQMS PSNLSALLNN QVPPNPVQIE EKLLPPSVIQ BACU005742/1-773 LREYQEEIKK LKAILAQQMS PSNLSAFLNN QVPPNPVQIE EKLLPPSVIQ 401 450 ENSBTAP00000023470/1-1033 HAMEAEKQLI RE-------- ---------- ---------- ---------- ENSTTRP00000010699/1-1026 HNTEAEKQLI RE-------- ---------- ---------- ---------- bmy_19174T0/1-708 HDTEAEKQLI RE-------- ---------- ---------- ---------- BACU005742/1-773 HDTEAEKQLI REVGHWLLPG GKPNAREGQL CRDWGLDVSA AGPLPLNYDL 451 500 ENSBTAP00000023470/1-1033 ---------- ---------- -------EYE ARLAQLRADY EAEQESRARL ENSTTRP00000010699/1-1026 ---------- ---------- -------EYE ERLARLRADY EAEQESRARL bmy_19174T0/1-708 ---------- ---------- -------EYE ERLARLRADY EAEQESRARL BACU005742/1-773 RWEQPWGPQR PWAGCGGLRP SLWEADREYE ERLARLRADY EAEQESRARL 501 550 ENSBTAP00000023470/1-1033 EEDITAMRNS YDVKLSTLEQ NLRKETEAVL KAEVLYKAEV LSRAEFASSS ENSTTRP00000010699/1-1026 EEDITAMRNS YDVKLSALEE NLRKETEAVL KAEVLYKAEA MSRAELASSS bmy_19174T0/1-708 EEDITAMRNS YDVKLSTLEE NLRKETEAVL KAEVLYKAEV MSRAEFASSS BACU005742/1-773 EEDITAMRNS YDVKLSTLEE NLRKETEAVL KAEVLYKAEV MSRAEFASSS 551 600 ENSBTAP00000023470/1-1033 EYLPPFEFKM AERPEIYSMP EPVPSEDSFK AQVSSGFEEL PKMAASKSEA ENSTTRP00000010699/1-1026 EHSPTFQYKM AVKPEIYSMP DTLPSEGVFK TEVSSRFEEL PKVEASQSEV bmy_19174T0/1-708 EHSPTFQYKM AVKPEIYSMA DTLPSEGVFK TEVSSRFEEL PKVEASKSEV BACU005742/1-773 EYSPTFQYKM AVKPEIYSMP GTLPSEGVFK TEVSSRFEEL PKVEASESEV 601 650 ENSBTAP00000023470/1-1033 SLGSDESSTL RENSVCTAFS GPEEPCSLEF SVPDSDAGGC YPLPDNVGRG ENSTTRP00000010699/1-1026 SLGSDESSML EENFISTAFP GPREPSSLEV PVPEVEAPSG HFLDEDVSRE bmy_19174T0/1-708 SLGSEESSTL EENFISMAFP GPREPSSLEV PVPEVEAPSG HFLDENVSRE BACU005742/1-773 SLGSDESSTL EENFISTAFP GPREHSSLEA PVPEVEAPSG HFLDEDVSRK 651 700 ENSBTAP00000023470/1-1033 AMEPLLE--- ----EEPPLM ALELLPGLHD PYAEVAAKLA RF-STVSRPE ENSTTRP00000010699/1-1026 ATEPLWEEEP FLQGEEPHLR ALELLPGLHN PLA-VEAKLA RLSSTGAGLD bmy_19174T0/1-708 ATEPLWEEEP FPQGEEPHLR ALEXLPGLHD PFAEVEAKLA RLSSTVAGLD BACU005742/1-773 ATEPLWEEEP FLQGEEPHLR ALELLPGLHD PFAEVEAKLA RLSSTVAGLD 701 750 ENSBTAP00000023470/1-1033 APPVDVPKVT TQVPDHPSLT DLLEPADLGS EAEVAEDLPP RNVKPVAEAQ ENSTTRP00000010699/1-1026 VPQADVPKVT TQ---HPSQT DLLEPGDLRS EAEADDDLLP RTEVDLGPGV bmy_19174T0/1-708 VXQADVPKVT TQ------VA DVMQDA---- ---------- ---------- BACU005742/1-773 VPQADVPKVA TQ------VA DVVQDA---- ---------- ---------- 751 800 ENSBTAP00000023470/1-1033 EAHSRLGSLI LSKAATWTWL TCILAAVELR AEPEAGLDWV AG-RNAGSDP ENSTTRP00000010699/1-1026 TEEVMLA--- ----AEPSVG AEGEAQVALG AQPQSLLAKT TARRDSMEVA bmy_19174T0/1-708 -----MG--- ----AELSWG TEAIGHVQ-- ---TSNLCRS ST-AGTISVV BACU005742/1-773 -----MG--- ----AELSWG TEVIGHVQ-- ---TSNLCRC ST-AGAISAV 801 850 ENSBTAP00000023470/1-1033 EPTAVTSPDL SVPVCEARLQ LLEQQVVGGE QAKNKDLKEK HRRRKRYADE ENSTTRP00000010699/1-1026 VLTDDLLPTV DQQQVLARLQ LLEQQVVGGE QAKNKDLKEK HRRRKRYADE bmy_19174T0/1-708 AL-------- ---------- ---------- ---------- ---------- BACU005742/1-773 AL-------- ---------- ---------- ---------- ---------- 851 900 ENSBTAP00000023470/1-1033 RKKQLVAALQ NSDEDSGDWV LLNVYDSIQE EVRAKSKLLE KMQRKLRAAE ENSTTRP00000010699/1-1026 RKKQLVAALQ NSDEDSGDWV LLNVYDSIQE EVRAKSKLLD KM-HKLRAAE bmy_19174T0/1-708 ---------- -------AW- ---------- ---------- ---RQLRCSG BACU005742/1-773 ---------- -------AW- ---------- ---------- ---RQLRCSG 901 950 ENSBTAP00000023470/1-1033 VEIKDLQSEF ELEKIDYLAT IRRQERDFLL LQQLLEQVQP LIRRDCNYSN ENSTTRP00000010699/1-1026 VEIKDLQSEF ELEKIDYLAT IRRQERDFML FQQLLEQVQP LIRRDCNYSN bmy_19174T0/1-708 V--------- ---------- ---------- ---------- ---------- BACU005742/1-773 V--------- ---------- ---------- ---------- ---------- 951 1000 ENSBTAP00000023470/1-1033 LEKIRRESCW DEDNGFWKIP EPIIIKTSLP -AVSTGPQNR PARKTSAADN ENSTTRP00000010699/1-1026 LEKIRRESCW DEDNGFWKIP QPIIIKTSLP VAVSTGLQNR SARKTSTADN bmy_19174T0/1-708 ---------W ERE------- ---------- ---------- ---------- BACU005742/1-773 ---------W ERE------- ---------- ---------- ---------- 1001 1050 ENSBTAP00000023470/1-1033 GEPGMDLESR QEEDRYRLML SRSDSENIAS NYFRPKRASQ ILGTDPMKSL ENSTTRP00000010699/1-1026 SEPG------ TEEDRYRLML SRSDSENIAS NYFRRKRATQ ILSADPMKSL bmy_19174T0/1-708 ---------- ---------- ---------- ---------- ---------- BACU005742/1-773 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSBTAP00000023470/1-1033 AHHSSPPGLS SPLGGGSAIP PAQAPEMPQP RPFRLESLDI PFTKAKRKKS ENSTTRP00000010699/1-1026 AHHSSPPGLS SPLGNSSAVS PTQAPEMPQP RPFRLESLDI PFTKARRKKS bmy_19174T0/1-708 -------ALS NAL------- ---------- ---------- ---------- BACU005742/1-773 -------ALS NTL------- ---------- ---------- ---------- 1101 1150 ENSBTAP00000023470/1-1033 KSSFGGEPL ENSTTRP00000010699/1-1026 KSSFGGEAL bmy_19174T0/1-708 --------- BACU005742/1-773 ---------