KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:43 2014 Check: 00 .. Name: ENSP00000369380/1-329 Len: 390 Check: 2072 Weight: 1.00 Name: ENSBTAP00000023476/1-324 Len: 390 Check: 5733 Weight: 1.00 Name: ENSTTRP00000005349/1-271 Len: 390 Check: 9270 Weight: 1.00 Name: bmy_01253T0/1-364 Len: 390 Check: 8464 Weight: 1.00 Name: BACU004916/1-341 Len: 390 Check: 7412 Weight: 1.00 // 1 50 ENSP00000369380/1-329 MMSNSSSEID VIKTRIPTYD EDDNTILYAY ETKPEFVNKE PNIVSDASCN ENSBTAP00000023476/1-324 KMSSGSSEVD VIRTRIPAYD -DDNTVLYAY EPNTAYFSNQ ETAVSDTSFN ENSTTRP00000005349/1-271 KMSSCSSEVD VIRTRISTYD -DDNTVLYAY EPNTAYF-NN GSVVSNTSCN bmy_01253T0/1-364 -MSSCSSEVD VFDFHRSKVL -TTQLLKY-- --------QQ ASVISNTSYN BACU004916/1-341 -MSSCSSEVD V--------- ---------- ---------Q ASVKSNTSYN 51 100 ENSP00000369380/1-329 TEEQLKTVDD VLIHCQVIYD ALQNLDKKID VIRRKVSKIQ RF--HARSLW ENSBTAP00000023476/1-324 -EEQQAVIQD ILVYCQAIYD AIQDLDKKFD IIHGKVSKIH RSRCRVKSTW ENSTTRP00000005349/1-271 -EEQQKTILN VLTHCQVIYD AIQKLDKKLD VMHAKVRKIK HF--RVKSWL bmy_01253T0/1-364 -EEQQKTVLD VLTHCQVICD AIQNLDKKFD VIHGKVTKIH RF--CMKSLW BACU004916/1-341 -EEQQKTVLD VLTYCQVICD AIQNLDKKFD VIHGKVTKIH RF--CVKSLW 101 150 ENSP00000369380/1-329 TNH------- ---KRYGY-- KKHSYRLVKK LKLQKMKKNE VYETFSYPES ENSBTAP00000023476/1-324 QSR------- ---KLHGNRH KN-NHQHSRK SKSHKRKRRD CPSSLSLTES ENSTTRP00000005349/1-271 QSR------- ---KPLGYAF KDYNYLLSKK IRYQKMRKKR CLCPSPYPKS bmy_01253T0/1-364 QNRLVYAGFV SFQKPLGYAY KNYNYLLSKK IKYQKMRKRE PSSPFSYPES BACU004916/1-341 QIR------- ---KPLGYPY KNYNYLLSKR IKYQKMRKRE PCSPFSYPVS 151 200 ENSP00000369380/1-329 YSPTLPVSRR ENNSPSNLPR PSFCMEEYQR AELEE----- DPILSRTPSP ENSBTAP00000023476/1-324 YSPTIPTSRR DDDSQSNTLG TSIESHKSPE REQESFFQDQ EPDLNQ---- ENSTTRP00000005349/1-271 YSPTIPVQRP EKDSQTNPL- PPFGSPVPLD L--------- ERSLSL--SP bmy_01253T0/1-364 YSPTSPVRRP QNDSQSNPMG TSFQSKESPE QEQEQ----- EPGLSQ--SP BACU004916/1-341 YSPTSPVRRP ENDSQSDPMG TSVQSKECAE QEQEQEQEQE EPGLSQ--SQ 201 250 ENSP00000369380/1-329 VHPSDFSEHN CQPY-YASDG ATYGSSSGLC LGNPRADSIH NTYSTDHASA ENSBTAP00000023476/1-324 -SPTVFT-QS YEPYEYMQKE PMQGPSY--- CSSPRAHN-- -FFPLDQATI ENSTTRP00000005349/1-271 TVPSTYCRRS YEEY-YSPQD PTQGSSS--- ---PEAHNTR SLFLDTQSTA bmy_01253T0/1-364 MVPSVFSAHS YQQY-YTPED PMQGSSSTPC CHNPAAHSTC GLFLATQATA BACU004916/1-341 -VPSVFAAHS YQHY-YTPED PMQGSSSMPC CHRPAAHSTC GLYLATQATA 251 300 ENSP00000369380/1-329 APPS------ ---------- ---------- ---------- -----VTRSP ENSBTAP00000023476/1-324 TPPA------ ---------- ---------- ---------- -----APTSP ENSTTRP00000005349/1-271 VEPA------ ---------- ---------- ---------- -----SRSSP bmy_01253T0/1-364 AEPATMLTQG ERSPARNRDM IVYPALLENN RLSHAGSPVY LPTGFAPSSP BACU004916/1-341 AEPATMLTQG ERSPAHNRDT IVYPALLENN RLCYARSPVY LPTGFAPSSP 301 350 ENSP00000369380/1-329 VENDGYIEEG SITKHPSTWS VEAVVLFLKQ TDPLALCPLV DLFRSHEIDG ENSBTAP00000023476/1-324 VRNNPDFFRE NLPEDPSIWS VDEVTMFLQD VDPQTFDPLV DLFRDHGIDG ENSTTRP00000005349/1-271 VGSDPGILKQ SLPDDPSTWS VDEVILFLKY VDPQLSSALV DLFMQH---- bmy_01253T0/1-364 VGSDPGVLKQ SLLDDPSTWS VDEVILFLKH IDPQTSGPLT DLFRQHEIDG BACU004916/1-341 VGSDRSVLRQ SLLDDPSTWS VDEVILFLKH IDPQTSGTLT NLFRQHEIDG 351 400 ENSP00000369380/1-329 KALLLLTSDV LLKHLGVKLG TAVKLCYYID RLKQGKCFEN ENSBTAP00000023476/1-324 KALLLLRSDM MIKYMGLKVG TALKICHYID RLKRERYIPN ENSTTRP00000005349/1-271 ---------- ---------- ---------- ---------- bmy_01253T0/1-364 KALLLLKSDM MMKYMGLKLG TAVKLCHYIE RLKKTDT--- BACU004916/1-341 KALLLLKSDM MMKYMGLKLG TAVKLCHYIE RLKKTDT---