KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:43 2014 Check: 00 .. Name: ENSP00000299882/1-457 Len: 518 Check: 7173 Weight: 1.00 Name: ENSBTAP00000023479/1-461 Len: 518 Check: 1442 Weight: 1.00 Name: BACU004008/1-397 Len: 518 Check: 267 Weight: 1.00 Name: ENSTTRP00000002046/1-453 Len: 518 Check: 8527 Weight: 1.00 Name: bmy_22246T0/1-513 Len: 518 Check: 4541 Weight: 1.00 // 1 50 ENSP00000299882/1-457 MSLMLDDQPP MEAQYAEEGP GPGIFRAEPG D-------QQ HPISQAVCWR ENSBTAP00000023479/1-461 QSPMLDGQAP TEAQDAEEGP GS----AEPG DLLRRPETQQ QPMSGAGRWC BACU004008/1-397 -SLLLYGRAP MEAQDAEESP GSWIFRAEPG DPLRRPEAQQ QPISWAWRWC ENSTTRP00000002046/1-453 MSLMLDGQAP MEAQYAEESP GSWIFRAEPG D-------QQ QPISWAGRWC bmy_22246T0/1-513 ---MLDGQAP MEAQYAEESP GSWIFRAEPG DPLRRPEAQQ QPISWAGHWC 51 100 ENSP00000299882/1-457 SMRRGCAVLG ALGLLAGAGV GSWLL-VLYL CPAASQPISG TLQDEEITLS ENSBTAP00000023479/1-461 AGRRCWAVLG ALGLLAGVGV GSWLLEVLYL WPAASQPTPE TLQDE-MTLN BACU004008/1-397 TGQRGWAVLG ALVLLAGASI GSWLL-ALYL WPAASQPVPG TLQDEEVSLN ENSTTRP00000002046/1-453 TGRRGWVAFG ALALLAGASI GSWLL-ALYL WPAAPQPVPG TLQDEDMSLN bmy_22246T0/1-513 TGQRGWAVLG ALVLLAGASI GSWLL-ALYL WPAASQPVPG TLQDEEMSLN 101 150 ENSP00000299882/1-457 CSEASAEEAL LPALPKTVSF RINS-EDFLL EAQVRDQPRW LLVCHEGWSP ENSBTAP00000023479/1-461 CSEASSEEAL LPSIPRTVSF RINTSEDFLL EVQLRARQDW LLVCHEGWSS BACU004008/1-397 CSEASGEEAL LPSLPRAVSF RMNT-EDFLL EVQVRARPDW LLVCHEGWSS ENSTTRP00000002046/1-453 CSEASDEEAL LPSLPRAVSF RITT-EDFLL EVQVRAWPDW LLVCHEGWSS bmy_22246T0/1-513 CSEASGEEAL LPSLPRAVSF RINT-EDFLL EVQVRARPDW LLVCQEGWSS 151 200 ENSP00000299882/1-457 ALGLQICWSL GHLRLTHHKG VNLTDIKLNS SQEFAQLSPR LGGFLEEAWQ ENSBTAP00000023479/1-461 ALGARVCRSL GHLRLTHHKA VNLSDVRLNS SREFAQLSPR LEGFPEEVWQ BACU004008/1-397 ALGVRICRSL GHLRLTDHKA VNLSDIRLNS SRQFAQLSPR LGGFPEEVWQ ENSTTRP00000002046/1-453 ALGVRICRSL GHLRLTDHKA VNLSDIRLNS SRQFAQLSPR LGGLPEEVWQ bmy_22246T0/1-513 ALGVRICRSL GHLRLTDHKA VNLSDIRLNS SRQFAQLSPR LGGLPEEVWQ 201 250 ENSP00000299882/1-457 PRNNCTSGQV VSLRCSECGA RPLASRIVGG QSVAPGRWPW QASVALGFRH ENSBTAP00000023479/1-461 PRDRCASGQI VSLKCSECGA RPLASRIVGG QAAAPGRWPW QASVTLGSRH BACU004008/1-397 P--------- ---------- ---------- ---------- ---------- ENSTTRP00000002046/1-453 PRGSCTSGQI VSLRCSECGT RPLASQIVGG QAVAPGRWPW QASVALGARH bmy_22246T0/1-513 PRDSCTSGQM VSLRCSECGT RPLASQIVGG QAVAPGRWPW QASVALGARH 251 300 ENSP00000299882/1-457 TCGGSVLAPR WVVTAAHCMH ---------S FRLARLSSWR VHAGLVSHSA ENSBTAP00000023479/1-461 TCGASVLGPR WVVTAAHCTH ---------S FRLSRLSSWR VHAGLVSHST BACU004008/1-397 ---------- ---------- ---------- -------SWR VHAGLVSHST ENSTTRP00000002046/1-453 TCGGSVLAPH WVVTAAHCVH ---------S FRLSRRSSWR VHAGLVSHST bmy_22246T0/1-513 TCGGSVLAPH WVVTAAHCVH RQGWGLLGGG FRLSRWSSWR VHAGLVSHST 301 350 ENSP00000299882/1-457 VRPHQGALVE RIIPHPLYSA QNHDYDVALL RLQTALNFS- ---------- ENSBTAP00000023479/1-461 VRPHQGAVVQ RIITHPLYSA QNHDYDVALL QLRTPLHFS- ---------- BACU004008/1-397 VRPHQGAVVE RIIAHPLYSA QSHDYDVALL QLRTPLHFS- ---------- ENSTTRP00000002046/1-453 VRPHQGAVVE RIIAHPLYSA QSHDYDVALL QLRTPLHFS- ---------- bmy_22246T0/1-513 VRPHQGAVVE RIIAHPLYSA QSHDYDVALL QLRTPLHFSG EAAVRGAAPG 351 400 ENSP00000299882/1-457 ---------- ---------- -DTVGAVCLP AKEQHFPKGS RCWVSGWGHT ENSBTAP00000023479/1-461 ---------- ---------- -DTVGAVCLP AEERDFPRGS ECWVSGWGHT BACU004008/1-397 ---------- ---------- -DTVGAVCLP AEEQDFPRGS QCWVSGWGHT ENSTTRP00000002046/1-453 ---------- ---------- -DTVGAVCLP AEEQDFPRGS QCWVSGWGHT bmy_22246T0/1-513 AREPRRFLRP PCAVNPTFTS FDSVGAVCLP AEEQDFPRGS QCWVSGWGHT 401 450 ENSP00000299882/1-457 HPSHTYSSDM LQDTVVPLFS TQLCNSSCVY SGALTPRMLC AGYLDGRADA ENSBTAP00000023479/1-461 DPGHTRSSDV LQDSVVPLLS TQLCNSSCVY SGALTPRMLC AGYLDGRADA BACU004008/1-397 DPSHTHRSDT LRDTVVPLLS TQLCSSSCVY SGALTPRMLC AGYLDQRADA ENSTTRP00000002046/1-453 DPSHTHRSDT LRDTVVPLLS TQLCNSSCVY SGALTPRMLC AGYLDQRADA bmy_22246T0/1-513 DPSHTHRSDT LRDAVVPLLS TQLCNSSCVY SGALTPRMLC AGYLDQRADA 451 500 ENSP00000299882/1-457 CQGDSGGPLV CPDGDTWRLV GVVSWGRGCA EPNHPGVYAK VAEFLDWIHD ENSBTAP00000023479/1-461 CQGDSGGPLV CLDEGTWRLV GVVSWGHGCA EPSHPGVYAK VAEFLDWIQD BACU004008/1-397 CQGDSGGPLV CLDKGTWRLV GVVSWGRGCA EPNHPGVYAK VAEFLDWIQD ENSTTRP00000002046/1-453 CQGDSGGPLV CLDKGTWRLV GVVSWGRGCA EPNHPGVYAK VAEFLDWIQD bmy_22246T0/1-513 CQGDSGGPLV CLDKGTWRLV GVVSWGRGCA EPNHPGVYAK VAEFLDWIQD 501 550 ENSP00000299882/1-457 TAQDSLL--- -------- ENSBTAP00000023479/1-461 TAAQQLI--- -------- BACU004008/1-397 TAQIGVLLYL VDSLLLIL ENSTTRP00000002046/1-453 TAQ------- -------- bmy_22246T0/1-513 TAQVSRGAGG ADPFVKDH