KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:46 2014 Check: 00 .. Name: ENSP00000306335/1-723 Len: 838 Check: 5637 Weight: 1.00 Name: ENSTTRP00000007124/1-721 Len: 838 Check: 8830 Weight: 1.00 Name: ENSBTAP00000023492/1-707 Len: 838 Check: 7636 Weight: 1.00 Name: bmy_06927T0/1-468 Len: 838 Check: 1683 Weight: 1.00 Name: BACU002579/1-806 Len: 838 Check: 9383 Weight: 1.00 // 1 50 ENSP00000306335/1-723 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007124/1-721 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023492/1-707 ---------- ---------- ---------- ---------- ---------- bmy_06927T0/1-468 ---------- ---------- ---------- ---------- ---------- BACU002579/1-806 MESSNPFPPS AAEVTRFLAS DGNRVVQSGQ RTGLKRSEKT INKRPRLSRF 51 100 ENSP00000306335/1-723 ---------M QNSEGGADSP ASVALRPSAA -----APPVP ASPQRVLVQA ENSTTRP00000007124/1-721 ---------M QNSEGGSDSP ASVALCPSSA AQAPVAQPVP ASPQRVLVQA ENSBTAP00000023492/1-707 ---------M QNSESGSDSP ASVALCSSAA AQAPVAQPVT ASPQRVLVQA bmy_06927T0/1-468 ----MAIENL QKSE------ ---------- ---------- ---------- BACU002579/1-806 QQDNSKELSM QNSEGGSDSP ASVALCPSSA AQAPVAQPVP ASPQRVLVQA 101 150 ENSP00000306335/1-723 ASSNPKGAQM QPISLPRVQQ VPQQVQPVQH VYPAQVQYVE GGDAVYTNGA ENSTTRP00000007124/1-721 AGSAPKGAQM QPISLPRVQQ VPQQVQPVQH VYPPQVQYVE GGEAVYTNGA ENSBTAP00000023492/1-707 AGSAPKGAQM QPLSLPRVQQ VTQQVQPAQH VYPAQLQYVE GGDAVFTNGA bmy_06927T0/1-468 ---------- ---------- ---------- ---------- ---------- BACU002579/1-806 AGSAPKGAQM QPISLPRV-- --QQVQPVQH VYPPQVQYVE GGDAVYTNGS 151 200 ENSP00000306335/1-723 IRTAYTYNPE PQMYAPSSTA SYFEAPGGAQ VTVAASSPPA VPSHSMVGIT ENSTTRP00000007124/1-721 LRTAYAYNPE PQMYAPSSSA SYFEAPGGAQ VTVAGSSPTA VPAHSMVGIT ENSBTAP00000023492/1-707 LRTAYAYNPE PQMYAPSSAA SYFEAPGGAQ VTVAGSSPPA VPSHSMVGIT bmy_06927T0/1-468 ---------- ---------- ---------- ---------- -------GIT BACU002579/1-806 LRTAYAYNPE PQMYAPSSSA SYFEAPGGAQ VTVAGSSPTA VPAHSMVGIT 201 250 ENSP00000306335/1-723 MDVGGSPIVS SAGAYLIHGG MDSTRHSLAH TSRSSPATLE MAIENLQKSE ENSTTRP00000007124/1-721 MDVGGSPIVS GTGAYLIHGG MDGTRHALAH TSRSSPATLE MAIENLQKSE ENSBTAP00000023492/1-707 MDVGGSPIVS SAGAYLIHGG MDGTRHTLAH TSRSSPATLE MAIENLQKSE bmy_06927T0/1-468 ---------- ---------- ---------- ---------- ---------- BACU002579/1-806 MDVAGSPIVS GAGAYLIHGG MEGTRHSLAH TSRSSPAT-- ---------- 251 300 ENSP00000306335/1-723 GITSHKSGLL NSHLQWLLDN YETAEGVSLP RSSLYNHYLR HCQEHKLDPV ENSTTRP00000007124/1-721 GITSHKSGLL NSHLQWLLDN YETAEGVSLP RSSLYNHYLR HCQEHKLDPV ENSBTAP00000023492/1-707 GITSHKSGLL NSHLQWLLDN YETAEGVSLP RSSLYNHYLR HCQEHKLDPV bmy_06927T0/1-468 ---SHKSGLL NSHLQWLLDN YETAEGVSLP RSSLYNHYLR HCQEYKLDPV BACU002579/1-806 ---------- ---LQWLLDN YETAEGVSLP RSSLYNHYLR HCQEHKLDPV 301 350 ENSP00000306335/1-723 NAASFGKLIR SVFMGLRTRR LGTRGNSKYH YYGIRLKPDS PLNRLQEDTQ ENSTTRP00000007124/1-721 NAASFGKLIR SVFMGLRTRR LGTRGNSKYH YYGIRLKPDS PLNRLQEDTQ ENSBTAP00000023492/1-707 NAASFGKLIR SVFMGLRTRR LGTRGNSKYH YYGIRLKPDS PLNRLQEDTQ bmy_06927T0/1-468 NAASFGKLIR SVFMGLRTRR LGTRGNSKYH YYGIRLKPDS PLNRLQEDTQ BACU002579/1-806 NAASFGKLIR SVFMGLRTRR LGTRGNSKYH YYGIRLKPDS PLNRLQEDTQ 351 400 ENSP00000306335/1-723 YMAMRQQPMH QKPRYRPAQK TDSLGDSGSH SGLHSTPEQT MAVQSQHHQQ ENSTTRP00000007124/1-721 YMAMRQQPVH QKPRYRPAQK TDSLGESGSH GSLHSTPEQA MAAQSQHHQQ ENSBTAP00000023492/1-707 YMAMRQQPVH QKPRYRPAQK TDSLGESGSH SSLHSTPEQA MAAQSQHHQQ bmy_06927T0/1-468 YMAMRQQPVH QKPRYRPAQK TDSLGESGSH GSLHSTPEQA MAAQSQHHQQ BACU002579/1-806 YMAMRQQPVH QKPRYRPAQK TDSLGESGSH GSLHSTPEQA MAAQSQHHQQ 401 450 ENSP00000306335/1-723 YIDVSHVFPE FPAPDLGSFL LQDGVTLHDV KALQLVYRRH CEATVDVVMN ENSTTRP00000007124/1-721 YIDVSHVFPE FPAPDLGSVL LQENITLHDI KALQLAYRRH CEATLDVVMN ENSBTAP00000023492/1-707 YIDVSHVFPE FPAPDLGSVL LQESITLHDV KALQLAYRRH CEATLDVVMN bmy_06927T0/1-468 YIDVSHVFPE FPAPDLGSVL LQENITLHDI KALQLAYRRH CEATLDVVMN BACU002579/1-806 YIDVSHVFPE FPAPDLGSVL LQENITLHDI KALQLAYRRH CEATLDVVMN 451 500 ENSP00000306335/1-723 LQFHYIEKLW LSFWNSKASS SDGPTSLPAS DEDPEGAVLP KDKLISLCQC ENSTTRP00000007124/1-721 LQFHYVEKLW LSFWNSKASS GDGPASLPTS DEEPEGAVLP KDKLVSLCKC ENSBTAP00000023492/1-707 LQFHYIEKLW LSFWNSK-SS SDGPTSLPAS DEEPEGAVLP KDKLVSLCKC bmy_06927T0/1-468 LQFHYVEKLW LSFWNSKASS SDGPASLPAR DEEPEGAVLP KDKLVSLCKC BACU002579/1-806 LQFHYVEKLW LSFWNSKASS SDGPASLPAR DEEPEGAVLP KDKLVSLCKC 501 550 ENSP00000306335/1-723 DPILRWMRSC DHILYQALVE ILIPDVLRPV PSTLTQAIRN FAKSLEGWLT ENSTTRP00000007124/1-721 DPVLRWMRTC VHIL-QALVE ILIPDVLRPV PSTLTQAIRN FAKSLEGWLT ENSBTAP00000023492/1-707 DPVLRWMRTC DHILYQALVE ILIPDVLRPV PSTLTQAIRN FAKSLEGWLT bmy_06927T0/1-468 DPVLRWMRTC DHILYQALVE ILIPDVLRPV PSTLTQAIRN FAKSLEGWLT BACU002579/1-806 DPVLRWMRTC DHILYQALVE ILIPDVLRPV PSTLTQAIRN FAKSLEGWLT 551 600 ENSP00000306335/1-723 NAMSDFPQQV IQTKVGVVSA FAQTLRRYTS LNHLAQAARA VLQNTSQINQ ENSTTRP00000007124/1-721 NAMSDFPQQV IQTKVGVVGA FAQTLRRYTS LNHLAQAARA VLQNTAQISQ ENSBTAP00000023492/1-707 NAMSDFPQQV IQTKVGVVSA FAQTLRRYTS LNHLAQAARA VLQNTSQINQ bmy_06927T0/1-468 NAMSDFPQQV IQTKDGEDG- ---------- ------KGRE V--------- BACU002579/1-806 NAMSDFPQQV IQTKVGVVGA FAQTLRRYTS LNHLAQAARA VLQNTAQISQ 601 650 ENSP00000306335/1-723 MLSDLNRVDF ANVQEQASWV CQCEESVVQR LEQDFKLTLQ QQSSLDQWAS ENSTTRP00000007124/1-721 MLSDLNRVDF ANVQEAS--V CQCEEGVMQR LE-DFKLTLQ QQSSLNQWAS ENSBTAP00000023492/1-707 MLSDLNRVDF ANVQEQASWV CQCEEGVVQR LEQDFKLTLQ QQSSLDQWAS bmy_06927T0/1-468 ---------- ---------V WEAGRPLAGR LG-------- ---------- BACU002579/1-806 MLSDLNRVDF ANVQEQASWV CQCEEGVVQR LEQDFKLTLQ QQSSLDQWAS 651 700 ENSP00000306335/1-723 WLDSVVTQVL KQHAGSPSFP KAARQFLLKW SFY------- ---------- ENSTTRP00000007124/1-721 WLDNVVTQ-L KQHAGSPSFP KAARQF-LKW SFY------- ---------- ENSBTAP00000023492/1-707 WLDNVVTQVL KQHAGSPSFP KAARQFLLKW SFY------- ---------- bmy_06927T0/1-468 ---------- --AGGEPGVP EVPARV---- ---------- ---------- BACU002579/1-806 WLDNVVTQVL KQHAGSPSFP KAARQFLLKW SFYRRLKLLA KDGEDGKGRR 701 750 ENSP00000306335/1-723 ---------- ---------- ---------- -SSMVIRDLT LRSAASFGSF ENSTTRP00000007124/1-721 ---------- ---------- ---------- -SSMVIRDLT LRSAASFGSF ENSBTAP00000023492/1-707 ---------- ---------- ---------- -SSMVIRDLT LRSAASFGSF bmy_06927T0/1-468 ---------- ---------- --------CR LSSMVIRDLT LRSAASFGSF BACU002579/1-806 VVWEAGRPLA GRLGAGGEPG VPEVPARVCR LSSMVIRDLT LRSAASFGSF 751 800 ENSP00000306335/1-723 HLIRLLYDEY MFYLVEHRVA EATGETPIAV MGEFNDLASL SLTLLDKDDM ENSTTRP00000007124/1-721 HLIRLLYDEY MFYLVEHRVA EATGETPIAV MGEXXXXXXX XXXXXXXXDL ENSBTAP00000023492/1-707 HLIRLLYDEY MFYLVEHRVA EATGETPIAV MGEFNDLASL SLTLLDK--- bmy_06927T0/1-468 HLIRLLYDEY MFYLVEHRVA EATGETPIAV MGEFNDLASL SLTLLDKDDL BACU002579/1-806 HLIRLLYDEY MFYLVEHRVA EATGETPIAV MGEFNDLASL SLTLLDKDDL 801 850 ENSP00000306335/1-723 GDEQRGSE-- -AGPDARSLG EPLVKRERSD PNHSLQGI ENSTTRP00000007124/1-721 SEDRGGSE-- --ASEARGRG EPLVKRERSD PNHPLQGV ENSBTAP00000023492/1-707 ----GGCVWA LPPVHSGGGG SP-------- -------- bmy_06927T0/1-468 SEDRGGSE-- -ARSEARGRG EPLVKRERGD PNHPLQGV BACU002579/1-806 SEDRGGSE-- -ASSEARGRG EPLVKRERGD HNHPLQGV