KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:47 2014 Check: 00 .. Name: ENSTTRP00000003028/1-1437 Len: 1453 Check: 4130 Weight: 1.00 Name: ENSP00000333926/1-1437 Len: 1453 Check: 6512 Weight: 1.00 Name: bmy_10433T0/1-1228 Len: 1453 Check: 3241 Weight: 1.00 Name: ENSBTAP00000023496/1-1183 Len: 1453 Check: 3208 Weight: 1.00 Name: BACU016582/1-1402 Len: 1453 Check: 4236 Weight: 1.00 // 1 50 ENSTTRP00000003028/1-1437 MKDIDIRKEY IIPSPGYRNV RERTSNSGQH RDREDSKYKR TQPLDCQDAL ENSP00000333926/1-1437 MKDIDIGKEY IIPSPGYRSV RERTSTSGTH RDREDSKFRR TRPLECQDAL bmy_10433T0/1-1228 ---MFINCAF AFPT------ ---------- -------YL- LKQLDCQDAL ENSBTAP00000023496/1-1183 ---------- ---------- ---------- ---------- ---------- BACU016582/1-1402 MKDIDIRKEY IIPSPGYRNV RERTSNSGQH RDREDSKYK- TQPLDCQDAL 51 100 ENSTTRP00000003028/1-1437 EAAARAEGLS LDASMHSQLR ILDEEHPKGK YHHSLSALKP IRTTSKHQHP ENSP00000333926/1-1437 ETAARAEGLS LDASMHSQLR ILDEEHPKGK YHHGLSALKP IRTTSKHQHP bmy_10433T0/1-1228 EAAARAEGLS LDASMHSQLR ILDEEHPKGK YHHSLSALKP IRTTSKHQHP ENSBTAP00000023496/1-1183 ---------- ---------- ---------- ---------- ---------- BACU016582/1-1402 EAAARAEGLS LDASMHSQLR ILDEEHPKGK YHHSLSALKP IRTTSKHQHP 101 150 ENSTTRP00000003028/1-1437 VDNAGLFSCM TFSWLSPLAH IAHKKGELLM EDVWSLSKHE SSEVNCRXXX ENSP00000333926/1-1437 VDNAGLFSCM TFSWLSSLAR VAHKKGELSM EDVWSLSKHE SSDVNCRRLE bmy_10433T0/1-1228 VDNAGLFSCM TFSWLSPLAR IAHKKGELST EDVWSLSKYE SSEVNCKRLE ENSBTAP00000023496/1-1183 ---------- ---------- ---------- ---------- ---------- BACU016582/1-1402 VDNAGLFSCM TFSWLSPLAR IAHKKGELST EDVWSLSKYE SSEVNCRRLE 151 200 ENSTTRP00000003028/1-1437 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXAFV ENSP00000333926/1-1437 RLWQEELNEV GPDAASLRRV VWIFCRTRLI LSIVCLMITQ LAGFSGPAFM bmy_10433T0/1-1228 RLWQEELHEV GPDAASLRRV VWTFCRTRLI LSIVCLMITQ LAGFSGPAFM ENSBTAP00000023496/1-1183 ---------- ---------- ---------- ---------- ---------- BACU016582/1-1402 RLWQEELHEV GPDAASLRRV VWTFCRTRLI LSIVCLMITQ LAGFSGPAFM 201 250 ENSTTRP00000003028/1-1437 VKHLLEYTQD TESNLQYSLL LVLGLLLTEI VRSWSLALTW ALNYRTGVRL ENSP00000333926/1-1437 VKHLLEYTQA TESNLQYSLL LVLGLLLTEI VRSWSLALTW ALNYRTGVRL bmy_10433T0/1-1228 VKHLLEYTQD TESDLQYSLL LVLGLLLTEI VRSWSLALTW ALNYRTGVRL ENSBTAP00000023496/1-1183 ---------- ---------- ---------- ---------- ---------- BACU016582/1-1402 VKHLLEYTQD TESDLQYSLL LVLGLLLTEI VRSWSLALTW ALNYRTGVRL 251 300 ENSTTRP00000003028/1-1437 RGAILTMAFK KILKLKNIKE KSVGELINLC SNDGQRMFEA AAVGSLLAGG ENSP00000333926/1-1437 RGAILTMAFK KILKLKNIKE KSLGELINIC SNDGQRMFEA AAVGSLLAGG bmy_10433T0/1-1228 RGAILTMAFK KILKLKNIKE KSVGELINLC SNDGQRMFEA AAVGSLLAGG ENSBTAP00000023496/1-1183 ------MAFK KILKLKNIKE KSVGELINLC SNDGQRMFEA AAVGSLLAGG BACU016582/1-1402 RGAILTMAFK KILKLKNIKE KSVGELINLC SNDGQRMFEA AAVGSLLAGG 301 350 ENSTTRP00000003028/1-1437 PVIAILGMIY NVIILGPTGF LGSAVFILFY PAMMFVSRIT AYFRRKCVTI ENSP00000333926/1-1437 PVVAILGMIY NVIILGPTGF LGSAVFILFY PAMMFASRLT AYFRRKCVAA bmy_10433T0/1-1228 PVIAILGMIY NVIILGPTGF LGSAVFILFY PAMMFVSRIT AYFRRKCVTI ENSBTAP00000023496/1-1183 PVIAILGMVY NVIILGPTGF LGSAVFILFY PAMMFVSRIT AYFRRKCVTI BACU016582/1-1402 PVIAILGMIY NVIILGPTGF LGSAVFILFY PAMMFVSRIT AYFRRKCVTI 351 400 ENSTTRP00000003028/1-1437 TDDRVQKMNE VLTYIKFIKM YAWVKAFSQS VQKIREEERR MLEKAGYFQS ENSP00000333926/1-1437 TDERVQKMNE VLTYIKFIKM YAWVKAFSQS VQKIREEERR ILEKAGYFQS bmy_10433T0/1-1228 TDDRVQKMNE VLTYIKFIKM YAWVKAFSQS VQKIREEERR MLEKAGYFQS ENSBTAP00000023496/1-1183 TDDRVQKMNE VLTYIKFIKM YAWVKAFSQS VQKIREDERR MLEKAGYFQS BACU016582/1-1402 TDDRVQKMNE VLTYIKFIKM YAWVKAFSQS VQKIREEERR MLEKAGYFQS 401 450 ENSTTRP00000003028/1-1437 ITVGVAPIVM VIASVVTFSV HMTLGFDLTA AQAFTVVTVF NSMTFALKVT ENSP00000333926/1-1437 ITVGVAPIVV VIASVVTFSV HMTLGFDLTA AQAFTVVTVF NSMTFALKVT bmy_10433T0/1-1228 ITVGVAPIVM VIASVVTFSV HMTLGFDLTA AQAFTVVTVF NSMTFALKVT ENSBTAP00000023496/1-1183 ITVGVAPIVM VIASVVTFSV HMTLGFDLTA AQAFTVVTVF NSMTFALKVT BACU016582/1-1402 ITVGVAPIVM VIASVVTFSV HMTLGFDLTA AQAFTVVTVF NSMTFALKVT 451 500 ENSTTRP00000003028/1-1437 PFSVKSLSEA SVAVDRFKSL FLMEEVHMIQ KKPASPHITI EMKNATLAWD ENSP00000333926/1-1437 PFSVKSLSEA SVAVDRFKSL FLMEEVHMIK NKPASPHIKI EMKNATLAWD bmy_10433T0/1-1228 PFSVKSLSEA SVAVDRFKSL FLMEEVHMIK KKPASPHITI EMKNATLAWD ENSBTAP00000023496/1-1183 PFSVKSLSEA SVAVDRFKSL FLMEEVHMIK KKPASPHLTI EMKNATLAWD BACU016582/1-1402 PFSVKSLSEA SVAVDRFKSL FLMEEVHMIK KKPTSPHITI EMKNATLAWD 501 550 ENSTTRP00000003028/1-1437 SSHSSLQNSP KLTPKTKKDK RAARGKKEKV RQLQPTEHQA VLAEQKGHLL ENSP00000333926/1-1437 SSHSSIQNSP KLTPKMKKDK RASRGKKEKV RQLQRTEHQA VLAEQKGHLL bmy_10433T0/1-1228 PSHSSLQNSP KLTPKTKKDK RAARGKKEKV RQLQRTEHQA VLAEQKGHLL ENSBTAP00000023496/1-1183 SSHSSIQNSP KLTPKTKKDK RAARGKKEKV RQLQRTEHQA VLAEQKGHLL BACU016582/1-1402 PSHSSLQNSP KLTPKTKKDK RAARGKKEKV RQLQRTEHQA VLAEQKGHLL 551 600 ENSTTRP00000003028/1-1437 LDSDERPSPE EEEGKHTHLG NLRLQRTLYN IDLEIEEGKL VGICGSVGSG ENSP00000333926/1-1437 LDSDERPSPE EEEGKHIHLG HLRLQRTLHS IDLEIQEGKL VGICGSVGSG bmy_10433T0/1-1228 LDSDERPSPE EEEGKHTHLG TLRLQRTLYN IDLEIEEGKL VGICGSVGSG ENSBTAP00000023496/1-1183 LDSDERPSPE EEEGKHIHLG SLRLQRTLYN IDLEIEEGKL VGICGSVGSG BACU016582/1-1402 LDSDERPSPE EEEGKHTHLG NLRLQRTLYN IDLEIEEGKL VGICGSVGSG 601 650 ENSTTRP00000003028/1-1437 KTSLISSILG QMSLLEGSIA VNGTFAYVAQ QAWILNATLR DNILFGKEFD ENSP00000333926/1-1437 KTSLISAILG QMTLLEGSIA ISGTFAYVAQ QAWILNATLR DNILFGKEYD bmy_10433T0/1-1228 KTSLISSILG QRAALQ---- ---------- -------SME PSLI------ ENSBTAP00000023496/1-1183 KTSLISSILG QMTLLEGSIA VNGTFAYVAQ QAWILNATLR DNILFGKEFD BACU016582/1-1402 KTSLISSILG QMSLLEGSIA VNGTFAYVAQ QAWILNATLR DNILFGKEFD 651 700 ENSTTRP00000003028/1-1437 EER------- -------YNS VLNSCCLRPD LAILPNSDLT EIGERGANLS ENSP00000333926/1-1437 EER------- -------YNS VLNSCCLRPD LAILPSSDLT EIGERGANLS bmy_10433T0/1-1228 ---------- -------YNS VLNSCCLRPD LAILPNSDLT EIGERGANLS ENSBTAP00000023496/1-1183 EER------- -------YNS VLNCCCLRPD LAILPHSDLT EIGERGANLS BACU016582/1-1402 EERQGMFGFC HAFILAVYNS VLNSCCLRPD LAILPNSDLT EIGERGANLS 701 750 ENSTTRP00000003028/1-1437 GGQRQRISLA RALYSDRDIY ILDDPLSALD AHVGNHIFNS AIQKHLKSKT ENSP00000333926/1-1437 GGQRQRISLA RALYSDRSIY ILDDPLSALD AHVGNHIFNS AIRKHLKSKT bmy_10433T0/1-1228 GGQRQRISLA RALYSDRDIY ILDDPLSALD AHVGNHIFNS AIQKHLKSKT ENSBTAP00000023496/1-1183 GGQRQRISLA RALYSDRDIY ILDDPLSALD AHVGNHIFNS AIQKHLKSKT BACU016582/1-1402 GGQRQRISLA RALYSDRDIY ILDDPLSALD AHVGNHIFNS AIQKHLKSKT 751 800 ENSTTRP00000003028/1-1437 VLFITHQLQY LADCDEVIFM KEGCITERGT HEELMNLNGD YATIFNNLLL ENSP00000333926/1-1437 VLFVTHQLQY LVDCDEVIFM KEGCITERGT HEELMNLNGD YATIFNNLLL bmy_10433T0/1-1228 VLFITHQLQY LADCDEVIFM KEGCITERGT HEELMNLNGD YATIFNNLLL ENSBTAP00000023496/1-1183 VLFITHQLQY LADCDEVIFM KEGCITERGT HEELMNLNGD YATIFNNLLL BACU016582/1-1402 VLFITHQLQ- ---------- ---------- ---------- ---------- 801 850 ENSTTRP00000003028/1-1437 GETPPVEINS KKETSGSQKK TQDKCPKTGS VKKEKAVKPE EGQLVQMEEK ENSP00000333926/1-1437 GETPPVEINS KKETSGSQKK SQDKGPKTGS VKKEKAVKPE EGQLVQLEEK bmy_10433T0/1-1228 GETPPVEINS KKETSGSQKK TQDKCPKTGS VKKEKAVKPE EGQLVQMEEK ENSBTAP00000023496/1-1183 GETPPVEINS KKETSGSQKK TQEKGPKTGS VKKEKAVKPE LGQLVQMEEK BACU016582/1-1402 -------INS KKETSGSQKK TQDKCPKTGS VKKEKAVKPE EGQLVQMEEK 851 900 ENSTTRP00000003028/1-1437 GQGSVPWSVY GVYIQAAGGP LAFLVILSLF MLNVGSTAFS NWWLSYWIKQ ENSP00000333926/1-1437 GQGSVPWSVY GVYIQAAGGP LAFLVIMALF MLNVGSTAFS TWWLSYWIKQ bmy_10433T0/1-1228 GQGSVPWSVY GVYIQAAGGP LAFLVILSLF MLNVGSTAFS NWWLGYWIKQ ENSBTAP00000023496/1-1183 GQGSVPWSVY GVYIQAAGGP LAFLVILSLF MLNVGSTAFS NWWLSYWIKQ BACU016582/1-1402 GQGSVPWSVY GVYIQAAGGP LAFRVILSLF MLNVGSTAFS NWWLGYWIKQ 901 950 ENSTTRP00000003028/1-1437 GSGNTTVTQE NRTSVSSSMK DNPLMQYYAS XXXXXXXXXX XXXXXXXXXX ENSP00000333926/1-1437 GSGNTTVTRG NETSVSDSMK DNPHMQYYAS IYALSMAVML ILKAIRGVVF bmy_10433T0/1-1228 GSGNTTVTQE NRTSVSSSMK DNPLMQHYAS IYALSMAVML ILKTIRGVVF ENSBTAP00000023496/1-1183 GSGNTTVTQE NRTSVSNSMK DNPLMHYYAS IYALSMAVML ILKAIRGVVF BACU016582/1-1402 GSGNTTVTQE NRTSVSSSMK DNPLMQYYAS IYALSMAVML ILKAIRGVVF 951 1000 ENSTTRP00000003028/1-1437 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX KDMDEVDVRL ENSP00000333926/1-1437 VKGTLRASSR LHDELFRRIL RSPMKFFDTT PTGRILNRFS KDMDEVDVRL bmy_10433T0/1-1228 VKGTLRASSR LHDELFRRIL RSPMKFFDTT PTGRILNRFS KDMDEVDVRL ENSBTAP00000023496/1-1183 VKGTLRASSR LHDELFRRIL RSPMKFFDTT PTGRILNRFS KDMDEVDVRL BACU016582/1-1402 VKGTLRASSR LHDELFRRIL RSPMKFFDTT PTGRILNRFS KDMDEVDVRL 1001 1050 ENSTTRP00000003028/1-1437 PFQAEMFIQN VILVFFCVGM IAGVFPWFLV AVGPLIILFS ILHIVSRVLI ENSP00000333926/1-1437 PFQAEMFIQN VILVFFCVGM IAGVFPWFLV AVGPLVILFS VLHIVSRVLI bmy_10433T0/1-1228 PFQAEMFIQN VILVFFCVGM IAGVFPWFLV AVGPLIILFS VLHIVSRVLI ENSBTAP00000023496/1-1183 PFQAEMFIQN VILVFFCVGM IAGVFPWFLV AVGPLVILFS ILHIVSRVLI BACU016582/1-1402 PFQAEMFIQN VILVFFCVGM IAGVFPWFLV AVGPLIILFS VLHIVSRVLI 1051 1100 ENSTTRP00000003028/1-1437 RELKRLDNIT QSPFLSHITS SIQGLATIHA YNKGQEFLHR YQELLDNNQR ENSP00000333926/1-1437 RELKRLDNIT QSPFLSHITS SIQGLATIHA YNKGQEFLHR YQELLDDNQA bmy_10433T0/1-1228 RELKRLDNIT QSPFLSHITS SIQGLATIHA YNKGQEFLHR YQELLDNNQS ENSBTAP00000023496/1-1183 RELKRLDNIT QSPFLSHITS SIQGLATIHA YNKGQEFLHR YQELLDNNQS BACU016582/1-1402 RELKRLDNIT QSPFLSHITS SIQGLATIHA YNKGQEFLHR YQELLDNNQS 1101 1150 ENSTTRP00000003028/1-1437 PFFLFTCAMR WLAVRLDLIS IALITTTGLM IVLMHGQIPP AYAGLAISYA ENSP00000333926/1-1437 PFFLFTCAMR WLAVRLDLIS IALITTTGLM IVLMHGQIPP AYAGLAISYA bmy_10433T0/1-1228 PFFLFTCAMR WLAVRLDLIS IALITTTGLM IVLMHGQIPP AYAGLAISYA ENSBTAP00000023496/1-1183 PFFLFTCAMR WLAVRLDLIS IALITTTGLM IVLMHGQIPP AYAGLAISYA BACU016582/1-1402 PFFLFTCAMR WLAVRLDLIS IALITTTGLM IVLMHGQIPP AYAGLAISYA 1151 1200 ENSTTRP00000003028/1-1437 V--QLTGLFQ FTVRLASETE ARFTSVERIN HYIKTLSLEA PARIKNKSPS ENSP00000333926/1-1437 V--QLTGLFQ FTVRLASETE ARFTSVERIN HYIKTLSLEA PARIKNKAPS bmy_10433T0/1-1228 V--QLTGLFQ FTVRLASETE ARFTSVERIN HYIKTLSLEA PARIKNKSPS ENSBTAP00000023496/1-1183 VQDQLTGLFQ FTVRLASETE ARFTSVERIN HYIKTLSLEA PARIKNKAPS BACU016582/1-1402 V--QLTGLFQ FTVRLASETE ARFTSVERIN HYIKTLSLEA PARIKNKSPS 1201 1250 ENSTTRP00000003028/1-1437 SDWPQEGEVT FENAEMRYQE NLPLVLKKVS FTIKPKEKIG IVGRTGSXXX ENSP00000333926/1-1437 PDWPQEGEVT FENAEMRYRE NLPLVLKKVS FTIKPKEKIG IVGRTGSGKS bmy_10433T0/1-1228 PDWPQEGEVT FENAEMRYQE NLPLVLKKVS FTIKPKEKIG IVGRTGSGKS ENSBTAP00000023496/1-1183 PDWPQEGEIT FENAEMRYQE NLPLVLKKVS FTIKPKEKIG IVGRTGSGKS BACU016582/1-1402 PDWPQEGEVT FENAEMRYQE NLPLVLKKVS FTIKPKEKIG IVGRTGSGKS 1251 1300 ENSTTRP00000003028/1-1437 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000333926/1-1437 SLGMALFRLV ELSGGCIKID GVRISDIGLA DLRSKLSIIP QEPVLFSGTV bmy_10433T0/1-1228 SLGMALFRLV ELSGGCIKID GVRISDIGLA DLRSKLSIIP QEPVLFSGTV ENSBTAP00000023496/1-1183 SLGMALFRLV ELCGGCIKID GVRISDIGLA DLRSKLSIIP QEPVLFSGTV BACU016582/1-1402 SLGMALFRLV ELSGGCIKID GVRISDIGLA DLRSKLSIIP QEPVLFSGTV 1301 1350 ENSTTRP00000003028/1-1437 XSNLDPFNQY TEDQIWDALE RTHMKECIAQ LPLKLESEVM ENGDNFSVGE ENSP00000333926/1-1437 RSNLDPFNQY TEDQIWDALE RTHMKECIAQ LPLKLESEVM ENGDNFSVGE bmy_10433T0/1-1228 R--------- ---------- ---------- ---------- ---------- ENSBTAP00000023496/1-1183 RSNLDPFNQY TEDQIWDALE RTHMKECIAQ LPLKLESEVM ENGDNFSVGE BACU016582/1-1402 RSNLDPFNQY TEDQIWDALE RTHMKECIAQ LPLKLESEVM ENGDNFSVGE 1351 1400 ENSTTRP00000003028/1-1437 RQLLCIARAL LRHCKILILD EATAAMDTET DLLIQETIRE AFADCTMLTI ENSP00000333926/1-1437 RQLLCIARAL LRHCKILILD EATAAMDTET DLLIQETIRE AFADCTMLTI bmy_10433T0/1-1228 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023496/1-1183 RQLLCIARAL LRHCKILILD EATAAMDTET DLLIQETIRE AFADCTMLTI BACU016582/1-1402 RQLLCIARAL LRHCKILILD EATAAMDTET DLLIQETIRE AFADCTMLTI 1401 1450 ENSTTRP00000003028/1-1437 AHRLHTVLGS DRIMVLAQGQ VVEFDTPSVL LSNDSSRFYA MFAAAENKIA ENSP00000333926/1-1437 AHRLHTVLGS DRIMVLAQGQ VVEFDTPSVL LSNDSSRFYA MFAAAENKVA bmy_10433T0/1-1228 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023496/1-1183 AHRLHTVLGS DRIMVLAQGQ VVEFDTPSVL LSNDSSRFYA MFAAAENKIA BACU016582/1-1402 AHRLHTVLGS DRIMVLAQGQ VVEFDTPSVL LSNDSSRFYA MFAAAENKIA 1451 1500 ENSTTRP00000003028/1-1437 VKG ENSP00000333926/1-1437 VKG bmy_10433T0/1-1228 --- ENSBTAP00000023496/1-1183 VKG BACU016582/1-1402 VKG