KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:48 2014 Check: 00 .. Name: BACU008259/1-1147 Len: 1175 Check: 7901 Weight: 1.00 Name: ENSBTAP00000023502/1-574 Len: 1175 Check: 67 Weight: 1.00 Name: ENSTTRP00000008986/1-582 Len: 1175 Check: 15 Weight: 1.00 Name: ENSP00000222115/1-578 Len: 1175 Check: 9031 Weight: 1.00 Name: bmy_19233T0/1-576 Len: 1175 Check: 102 Weight: 1.00 // 1 50 BACU008259/1-1147 ---------- ---------- ---MAAHDPI WPPPTECNDM GAAILHGTNS ENSBTAP00000023502/1-574 ---------- ---------- ---LFPKDVP KPSQAAR--- --------HC ENSTTRP00000008986/1-582 ---------- ---------- ---MRQXXXX XXXXXXX--- --------XX ENSP00000222115/1-578 ---------- ---------- ---MRQQDAP KPTPAAC--- --------RC bmy_19233T0/1-576 ALAIRWSRRC CLHPSSHSAL VLPEKTLDVP KPSPAGR--- --------HC 51 100 BACU008259/1-1147 SGHQNPSLTS KVALN--GLL SFNDVALDFT WEEWQLLDTV QKNLYRDVML ENSBTAP00000023502/1-574 SGLVRRVLTI AFALLILGLM T--------- ---WAYAAGV PLASDR---- ENSTTRP00000008986/1-582 XXXXXXXXXX XFALLILGLM T--------- ---WAYAASV PLASDR---- ENSP00000222115/1-578 SGLARRVLTI AFALLILGLM T--------- ---WAYAAGV PLASDR---- bmy_19233T0/1-576 SGLARRVLTI AFALLILGLM T--------- ---WAYAAGV PLASDR---- 101 150 BACU008259/1-1147 ENYSNLMSLG YQVTKPEPVM HLEKGKEKEK AVVEREFPIQ CGPEVMWQVY ENSBTAP00000023502/1-574 ---YGLLAFG L--------- ---------- ---------- ---------- ENSTTRP00000008986/1-582 ---YGLLAFG L--------- ---------- ---------- ---------- ENSP00000222115/1-578 ---YGLLAFG L--------- ---------- ---------- ---------- bmy_19233T0/1-576 ---YGLLAFG L--------- ---------- ---------- ---------- 151 200 BACU008259/1-1147 DWHREDNGKG GPVERDHENN ALGKIFPLSK NFVSFTQRPH KCVSRGISLK ENSBTAP00000023502/1-574 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008986/1-582 ---------- ---------- ---------- ---------- ---------- ENSP00000222115/1-578 ---------- ---------- ---------- ---------- ---------- bmy_19233T0/1-576 ---------- ---------- ---------- ---------- ---------- 201 250 BACU008259/1-1147 QNSDPSYQSK SYAEMNSDEL NGYGKSFFHT LHETSHPRAQ YYEHNLCVRS ENSBTAP00000023502/1-574 ---------- ---------- --YGA--FLS AHLVAQSLFA YLEHR----- ENSTTRP00000008986/1-582 ---------- ---------- --YGA--FLS VHLVAQSLFA YLEHR----- ENSP00000222115/1-578 ---------- ---------- --YGA--FLS AHLVAQSLFA YLEHR----- bmy_19233T0/1-576 ---------- ---------- --YGA--FLS VHLVAQSLFA YLEHR----- 251 300 BACU008259/1-1147 FSTVTNLKRH HRIHTEGKPY ECSECPRSFR THTGEKPYEC KECGKAYREK ENSBTAP00000023502/1-574 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008986/1-582 ---------- ---------- ---------- ---------- ---------- ENSP00000222115/1-578 ---------- ---------- ---------- ---------- ---------- bmy_19233T0/1-576 ---------- ---------- ---------- ---------- ---------- 301 350 BACU008259/1-1147 TKLRLHYRTH TGEKPFECSD CGKGFMQKSN LIIHQRIHTG EKPYGCKECG ENSBTAP00000023502/1-574 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008986/1-582 ---------- ---------- ---------- ---------- ---------- ENSP00000222115/1-578 ---------- ---------- ---------- ---------- ---------- bmy_19233T0/1-576 ---------- ---------- ---------- ---------- ---------- 351 400 BACU008259/1-1147 KAFCSKSQLV VHQRNHTGEK SYECRECGKA FNKNLHLITH QKIHIREKPY ENSBTAP00000023502/1-574 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008986/1-582 ---------- ---------- ---------- ---------- ---------- ENSP00000222115/1-578 ---------- ---------- ---------- ---------- ---------- bmy_19233T0/1-576 ---------- ---------- ---------- ---------- ---------- 401 450 BACU008259/1-1147 ECSECGKAFV HTSQLILHQR NHTARTPYEC EGCGKAFNKK SHFITHQRIH ENSBTAP00000023502/1-574 ---------- ---RVAAAAR RAAARGPPEA A--------- ---------- ENSTTRP00000008986/1-582 ---------- ---RVAAAAR RAAARGPPDA A--------- ---------- ENSP00000222115/1-578 ---------- ---RVA---- -AAARGPLDA A--------- ---------- bmy_19233T0/1-576 ---------- ---R------ ---------- ---------- ---------- 451 500 BACU008259/1-1147 TGEKPYECSE CGKAFIDKSQ LIVHRRTHTG EKPYECKECG KAFNKKSSLI ENSBTAP00000023502/1-574 ---------- -------TAR SVALTISAYQ EDPAYLRQC- ---------- ENSTTRP00000008986/1-582 ---------- -------TAR SVALTISAYQ EDPAYLRQC- ---------- ENSP00000222115/1-578 ---------- -------TAR SVALTISAYQ EDPAYLRQC- ---------- bmy_19233T0/1-576 ---------- ---------- ---------- EDPAYLRQC- ---------- 501 550 BACU008259/1-1147 THQRIHTGEK PYECSECGKA FIDKSHLIVH QRTHTGERPY ECSECGKTFI ENSBTAP00000023502/1-574 ---------- ---------- -LVSARALVY PRTR------ ---------L ENSTTRP00000008986/1-582 ---------- ---------- -LVSARALVY PRAR------ ---------L ENSP00000222115/1-578 ---------- ---------- -LASARALLY PRAR------ ---------L bmy_19233T0/1-576 ---------- ---------- -LVSARALVY PRAR------ ---------L 551 600 BACU008259/1-1147 RKAMLIVHQR THTGEKPFVC LECQKAFSSM AMLSRHQLIH TGEKPHGCSE ENSBTAP00000023502/1-574 RVLMVVDGNR A--------- -------EDL YMVDMFREVF ADEDPATYV- ENSTTRP00000008986/1-582 HILMVVDGNR A--------- -------EDL YMVDMFREVF ADEDPATYV- ENSP00000222115/1-578 RVLMVVDGNR A--------- -------EDL YMVDMFREVF ADEDPATYV- bmy_19233T0/1-576 HILMVVDGNR A--------- -------EDL YMVDMFREVF ADEDPATYV- 601 650 BACU008259/1-1147 CGKAFRQKSH LIIHQRCHTG EKPYGCIPCG QIFNQKSQLI RHQRHHTGEK ENSBTAP00000023502/1-574 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008986/1-582 ---------- ---------- ---------- ---------- ---------- ENSP00000222115/1-578 ---------- ---------- ---------- ---------- ---------- bmy_19233T0/1-576 ---------- ---------- ---------- ---------- ---------- 651 700 BACU008259/1-1147 PYQCTQCGKA FFEKSYLSVH QRSHAGQKPY QCALPWLPST QDKVPASESG ENSBTAP00000023502/1-574 ---------- -WDGNY---H Q--------- ----PWEPAA AGAA------ ENSTTRP00000008986/1-582 ---------- -WDSNY---H Q--------- ----PWEPAA AGAA------ ENSP00000222115/1-578 ---------- -WDGNY---H Q--------- ----PWEPAA AGAV------ bmy_19233T0/1-576 ---------- -WESNY---H Q--------- ----PWEPAA AGAA------ 701 750 BACU008259/1-1147 IQNPAWGGPC YAPTPVRHPF SLHNINSQDV PKPSPAARHC SGLARRVLTI ENSBTAP00000023502/1-574 ------GEGA Y--------- --REVEAED- ----PGRLAV EALVKTR--- ENSTTRP00000008986/1-582 ------GEGA Y--------- --REVEAED- ----PGRLAV EALVRTR--- ENSP00000222115/1-578 ------GAGA Y--------- --REVEAED- ----PGRLAV EALVRTR--- bmy_19233T0/1-576 ------GEGA Y--------- --REVEAED- ----PGRLAV EALVRTR--- 751 800 BACU008259/1-1147 AFALLILGLM TWAYAAGVPL ASDRYGLLAF GLYGAFLSVH LVAQSLFACV ENSBTAP00000023502/1-574 ---------- ---------- ---------- ---------- -------RCV ENSTTRP00000008986/1-582 ---------- ---------- ---------- ---------- -------RCV ENSP00000222115/1-578 ---------- ---------- ---------- ---------- -------RCV bmy_19233T0/1-576 ---------- ---------- ---------- ---------- -------RCV 801 850 BACU008259/1-1147 CVAQRWGGKR EVMYTAFKAL GDSVDYVQVC DSDTRLDPVA LLELVQVLDE ENSBTAP00000023502/1-574 CVAQRWGGKR EVMYTAFKAL GDSVDYVQVC DSDTRLDPMA LLELVRVLDE ENSTTRP00000008986/1-582 CVAQRWGGKR EVMYTAFKAL GDSVDYVQVC DSDTRLDPVA LLELVQVLDE ENSP00000222115/1-578 CVAQRWGGKR EVMYTAFKAL GDSVDYVQVC DSDTRLDPMA LLELVRVLDE bmy_19233T0/1-576 CVAQRWGGKR EVMYTAFKAL GDSVDYVQVC DSDTRLDPVA LLELVQVLDE 851 900 BACU008259/1-1147 DPRVGAVGGD VRILNPLDSW VSFLSSLRYW VAFNVERACQ SYFHCVSCIS ENSBTAP00000023502/1-574 DPRVGAVGGD VRILNPLDSW VSFLSSLRYW VAFNVERACQ SYFHCVSCIS ENSTTRP00000008986/1-582 DPRVGAVGGD VRILNPLDSW VSFLSSLRYW VAFNVERACQ SYFHCVSCIS ENSP00000222115/1-578 DPRVGAVGGD VRILNPLDSW VSFLSSLRYW VAFNVERACQ SYFHCVSCIS bmy_19233T0/1-576 DPRVGAVGGD VRILNPLDSW VSFLSSLRYW VAFNVERACQ SYFHCVSCIS 901 950 BACU008259/1-1147 GPLGLYRNNL LQQFLEAWYN QKFLGTHCTF GDDRHLTNRM LSMGYATKYT ENSBTAP00000023502/1-574 GPLGLYRNNL LQQFLEAWYN QKFLGTHCTF GDDRHLTNRM LSMGYATKYL ENSTTRP00000008986/1-582 GPLXLYRNNL LQQFLEAWYN QKFLGT-CTF GDDRHLTNRM LSMGYATKYT ENSP00000222115/1-578 GPLGLYRNNL LQQFLEAWYN QKFLGTHCTF GDDRHLTNRM LSMGYATKYT bmy_19233T0/1-576 GPLGLYRNNL LQQFLEAWYN QKFLGTHCTF GDDRHLTNRM LSMGYATKYT 951 1000 BACU008259/1-1147 SRSRCYSETP SSFLRWLSQQ TRWSKSYFRE WLYNALWWHR HHAWMTYEAV ENSBTAP00000023502/1-574 SKCVCFASQD GSTMESTDSP ICWKRKTSTE W--DQLVRET AHAKVTYKAR ENSTTRP00000008986/1-582 SRSRCYSETP SSFLRWLSQQ TRWSKSYFRE WLYNALWWHR HHAWMTYEAV ENSP00000222115/1-578 SRSRCYSETP SSFLRWLSQQ TRWSKSYFRE WLYNALWWHR HHAWMTYEAV bmy_19233T0/1-576 SRSRCYSETP SSFLRWLSQQ TRWSKSYFRE WLYNALWWHR HHAWMTYEAV 1001 1050 BACU008259/1-1147 V--SGLFPFF VAATVLRLFY AGRPWALLWV LLCVQGVALA KAAFAAWLRG ENSBTAP00000023502/1-574 TWPAGGRPCR GARRPLAAAS AGSPAARLLM PPWPAPHPAR TAAPRAAPRG ENSTTRP00000008986/1-582 V--SGLFPFF VAATVLRLFY AGRPWALLWV LLCVQGVALA KAAFAAWLRG ENSP00000222115/1-578 V--SGLFPFF VAATVLRLFY AGRPWALLWV LLCVQGVALA KAAFAAWLRG bmy_19233T0/1-576 V--SGLFPFF VAATVLRLFY AGRPWALLWV LLCVQGVALA KAAFAAWLRG 1051 1100 BACU008259/1-1147 CPRLLLLSLY -APLYMGGLL PAKFLALATM SQSGWGTSGR RRLAANYVPV ENSBTAP00000023502/1-574 GPRRRAAAPW PPPLAEVRLG PARLLAQPA- -QEG---RGR LRVAAR---- ENSTTRP00000008986/1-582 CLRMLLLSLY -APLYMGGLL PAKFLALATM NQSGWGTSGR RQLAANYVPV ENSP00000222115/1-578 CLRMVLLSLY -APLYMCGLL PAKFLALVTM NQSGWGTSGR RKLAANYVPL bmy_19233T0/1-576 CPRMLMLSLY -APLYMGGLL PAKFLALATM SQSGWGTSGR RRLAANYVPV 1101 1150 BACU008259/1-1147 LPLALWALLL LGGLVRSVVH EARADWSGAS RAAEARHPAA GAGAYVGYWA ENSBTAP00000023502/1-574 -PRGVPGREG RDGAVSAALL GAHGDRSGPS RAAEAHHLAA GAGAYVGYWA ENSTTRP00000008986/1-582 LPLALWALLL LGGLVRSVVR EARADWSGPS RAAEARHLAA GAGAYVGYWA ENSP00000222115/1-578 LPLALWALLL LGGLVRSVAH EARADWSGPS RAAEAYHLAA GAGAYVGYWV bmy_19233T0/1-576 LPLALWALLL LGGLVRSVVH EARADWSGPS RAAEARHLAA GAGAYVGYWA 1151 1200 BACU008259/1-1147 IMLTLYWVWV RRLCRRRAGG YRVQV ENSBTAP00000023502/1-574 VMLTLYWVGV RRLCRRRAGG YRVQV ENSTTRP00000008986/1-582 IMLTFYWVWV RRLCRRRAGG YRVQV ENSP00000222115/1-578 AMLTLYWVGV RRLCRRRTGG YRVQV bmy_19233T0/1-576 IMLTFYWVRV RRLCRRRAGG YRVQV