KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:20:48 2014 Check: 00 .. Name: ENSTTRP00000010064/1-409 Len: 455 Check: 5032 Weight: 1.00 Name: ENSBTAP00000023509/1-388 Len: 455 Check: 7808 Weight: 1.00 Name: bmy_13254T0/1-411 Len: 455 Check: 9964 Weight: 1.00 Name: ENSP00000345405/1-410 Len: 455 Check: 7869 Weight: 1.00 // 1 50 ENSTTRP00000010064/1-409 ---------- ---MVRVRAV VMARDDSSGG WLPVGGGGLS QVSVCRVRGA ENSBTAP00000023509/1-388 MLEEGGHKRG DGYMVRVRAV VMARDDSSGG WLPVGGGGLS QVSVCRVRGA bmy_13254T0/1-411 ---------- ---MVRVRAV VMARDDSSGG WLPVGGGGLS QVSVCRVRGA ENSP00000345405/1-410 ---------- ---MVRVRAV VMARDDSSGG WLPVGGGGLS QVSVCRVRGA 51 100 ENSTTRP00000010064/1-409 RPEGGARQGH YVIHGERLRD QKXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000023509/1-388 RPEGGARQGH YVIHGERLRD QKITLECTLR PGLVYNKVNP IFHHWSLGDC bmy_13254T0/1-411 RPEGGARQGH YVIHGERLRD QKTTLECTLR PGLIYNKVNP IFHHWSLGDC ENSP00000345405/1-410 RPEGGARQGH YVIHGERLRD QKTTLECTLK PGLVYNKVNP IFHHWSLGDC 101 150 ENSTTRP00000010064/1-409 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXX-XXXXXX XXXXXXXXXX ENSBTAP00000023509/1-388 KFGLTFQSPA EADEFQKSLL AALAALGRGS LTP-SSSSSS SSPSQDTAET bmy_13254T0/1-411 KFGLTFQSPA EADEFQKSLL AALAALGRGS LTPSSSSSSS SSPSQDTADT ENSP00000345405/1-410 KFGLTFQSPA EADEFQKSLL AALAALGRGS LTP-SSSSSS SSPSQDTAET 151 200 ENSTTRP00000010064/1-409 XXXXX----- ---------- ---------- ------SHVD SDSSSSHSHQ ENSBTAP00000023509/1-388 PCPLTVSLLG ATLPGGQGAM SISIPVILVF LFYYDISHVD SDSSSSHSHQ bmy_13254T0/1-411 PCPLT----- ---------- ---------- ------SHVD SDSSSSHSHQ ENSP00000345405/1-410 PCPLT----- ---------- ---------- ------SHVD SDSSSSHSRQ 201 250 ENSTTRP00000010064/1-409 ETPPTAAAAP IVTVESASGF GPATPPQRRR SSA-SYPPLL PFTGIPEPSE ENSBTAP00000023509/1-388 ETPPSAAAAP IVTVELLQ-- ------EKEK ---------- -MAGVQESEK bmy_13254T0/1-411 ETPPTAAAAP IVTVESASGF GPATPPQRRR SSAQSYPPLL PFTGIPEPSE ENSP00000345405/1-410 ETPPSAAAAP IITMESASGF GPTTPPQRRR SSAQSYPPLL PFTGIPEPSE 251 300 ENSTTRP00000010064/1-409 PLAGTGGLGW GGRGYEDYRR AGPPAPLALS TCVVRFAKTG ALRGAALGPP ENSBTAP00000023509/1-388 GW-------W GGRGYEDYRR AGPPAPLALS TCVVRFAKTG ALRGAALGPP bmy_13254T0/1-411 PLAGTGGLGW GGRGYEDYRR AGPPAPLALS TCVVRFAKTG ALRGAALGPP ENSP00000345405/1-410 PLAGAGGLGW GGRGYEDYRR SGPPAPLALS TCVVRFAKTG ALRGAALGPP 301 350 ENSTTRP00000010064/1-409 TALPAPLTEA APPAPPVRPP PGPGPAPAPT KASPEAEEAA RCVHCRALFR ENSBTAP00000023509/1-388 AVLPAPLTEA APPAPPARPP PGPGPAPAPA KASPEAEEAA RCVHCRALFR bmy_13254T0/1-411 TALPAPLTEA APPAPSARPP PGPGPAPAPA KASPEAEEAA RCVHCRALFR ENSP00000345405/1-410 AALPAPLTEA APPAPPARPP PGPGPSSAPA KASPEAEEAA RCVHCRALFR 351 400 ENSTTRP00000010064/1-409 RRADGRGGRC AEAPDPGRRL VRRLSCLWCA ESLLYHCLSD AEGDFSDPCA ENSBTAP00000023509/1-388 RRADGRGGRC AEAPDPGRLL VRRLSCLWCA ESLLYHCLSD AEGDFSDPCA bmy_13254T0/1-411 RRADGRGGRC AEAPDPGRRL VRRLSCLWCA ESLLYHCLSD AEGDFSDPCA ENSP00000345405/1-410 RRADGRGGRC AEAPDPGRLL VRRLSCLWCA ESLLYHCLSD AEGDFSDPCA 401 450 ENSTTRP00000010064/1-409 CEPGHPRPAA RWAALAALSL AVPCLCCYAP LRACHWVAAR CGCAGCGGRH ENSBTAP00000023509/1-388 CEPGHPRPAA RWAAL----- ---------- ---------- ---------- bmy_13254T0/1-411 CEPGHPRPAA RWAALAALSL AVPCLCCYAP LRACHWVAAR CGCAGCGGRH ENSP00000345405/1-410 CEPGHPRPAA RWAALAALSL AVPCLCCYAP LRACHWVAAR CGCAGCGGRH 451 500 ENSTTRP00000010064/1-409 EEAAR ENSBTAP00000023509/1-388 ----- bmy_13254T0/1-411 EEAAR ENSP00000345405/1-410 EEAAR