KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:49 2014 Check: 00 .. Name: ENSP00000368411/1-802 Len: 823 Check: 8943 Weight: 1.00 Name: ENSTTRP00000016140/1-669 Len: 823 Check: 5373 Weight: 1.00 Name: ENSBTAP00000023511/1-568 Len: 823 Check: 8164 Weight: 1.00 Name: bmy_10023T0/1-450 Len: 823 Check: 7764 Weight: 1.00 Name: BACU001180/1-337 Len: 823 Check: 3521 Weight: 1.00 // 1 50 ENSP00000368411/1-802 MRAVLSQKTT PLPRYLWPGH LSGPRRLTWS WCSDHRTPTC RELGSPHPTP ENSTTRP00000016140/1-669 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023511/1-568 ---------- ---------- ---------- ---------- ---------- bmy_10023T0/1-450 ---------- ---------- ---------- ---------- ---------- BACU001180/1-337 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000368411/1-802 CTGPARGWPR RGGGPCGFTS AGHVLCGYPL CLLSGPIQGC GTGLGDSSMA ENSTTRP00000016140/1-669 ---------- ---------- ---------- ---------- --------VT ENSBTAP00000023511/1-568 ---------- ---------- ---------- ---------- ---------- bmy_10023T0/1-450 ---------- ---------- ---------- ---------- ---------- BACU001180/1-337 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000368411/1-802 FLSRTSPVAA ASFQSRQEAR GSILLQSCQL PPQWLSTEAW TGEWKQPHGG ENSTTRP00000016140/1-669 SLSQRSPVAS ASFQSHEAAH GCFLNRQ--- -QHRHCRSHP TGGWRHPHRE ENSBTAP00000023511/1-568 ---------- ---------- ---------- ---------- ---------- bmy_10023T0/1-450 ---------- ---------- ---------- ---------- ---------- BACU001180/1-337 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000368411/1-802 ALTSRSPGPV APQRPCHLKG WQHRPTQHNA ACKQGQAAAQ TPPR---PGP ENSTTRP00000016140/1-669 APASRSPAP- -HQRPRPLGR WQQRPTQPEP ACKQGQAGAM AQATGGGPGP ENSBTAP00000023511/1-568 ---------- ---------- ---------- ---------- ---------P bmy_10023T0/1-450 MAQAAGGGP- -GTRTCPQL- ---------- ---------- ---------P BACU001180/1-337 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000368411/1-802 PSAPPPPPKE GHQEGLVELP ASFRELLTFF CTNATIHGAI RLVCSRGNRL ENSTTRP00000016140/1-669 PSPPPPPPEE ERGERLVELR ASLRELVATF CTNGTIHGAI RLVCSSQNRL ENSBTAP00000023511/1-568 QASPPTLPEE EHGERLVELH ASFRELVTFF CTNSTIHGTI RLVCSSQNRL bmy_10023T0/1-450 PSPPPPPPKE ERGERLVELH ASFRELVTFF CTNGAIHGTI RLVCSSQNRL BACU001180/1-337 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000368411/1-802 KTTSWGLLSL GALVALCWQL GLLFERHWHR PVLMAVSVH- --SERKLLPL ENSTTRP00000016140/1-669 KTASWGPRLA RALGVLCWQL GLLFRQYWRY PVIMTVSVH- --SERKLFLS ENSBTAP00000023511/1-568 KTASWGLLLA GALGVLYWQF ALLFEQYWRY PVIMTVSVH- --SERKLFPS bmy_10023T0/1-450 KTASWALLLA GALGLLCWQF RLLFEQYWRY PAIMTVSYTQ SGAQGKLFPS BACU001180/1-337 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000368411/1-802 VTLCDGNPRR PSPVLRHLEL LDEFARENID SLYNVNLSKG RAALSATVPR ENSTTRP00000016140/1-669 VTPCDMNPHR XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000023511/1-568 VTLCDMNPHR PHLARHHLRV LDDFARESIY SLYRFNFSDS MDALGAEVPG bmy_10023T0/1-450 ATLCDRNPHR PHPARRPLQA LDNFARENIY SLYGFNFSDS VDVPGAEAPG BACU001180/1-337 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000368411/1-802 HEPPFHLDRE IRLQRLSHSG SRVRVGFRLC NSTGGDCFYR GYTSGVAAVQ ENSTTRP00000016140/1-669 XXXXXXXXXX XXXXXXXXXX XXXXXXXXLC NSAGGDCTQQ AYSSGVVAAR ENSBTAP00000023511/1-568 PEPAFHLDRR IRLQRLRPLD GQNRVGFKLC NSTGGDCVER AYSSGVVAAR bmy_10023T0/1-450 PEPTLQLDRG IRLQRLSPLR GQNRVGCELR NSAGGDCVQQ AYSSGVAAAR BACU001180/1-337 ---------- ---------- ----MGCKLR NSTGGDCIQQ AYSSGVAATR 401 450 ENSP00000368411/1-802 DWYHFHYVDI LALLPAAWED SHGSQDGHFV LSCSYDGLDC QARQFRTFHH ENSTTRP00000016140/1-669 EWYRLHRVNV LGLLPT---D GHHSRGRH-V FSCRYDGQDR QAQHFQTSHR ENSBTAP00000023511/1-568 EWYRFHYINI LALLPAAHED SH---GSHFV FSCRYDDRDC HAQHFQTSHH bmy_10023T0/1-450 EWYRFRCVNV LALPPAAHED SHHSRGRHFV FSCCYDDQDR QAQHFQTPHH BACU001180/1-337 EWYHFHCANA LALPPAAHED SHHSRGRRFV FSCRYDDQDR QARRF----H 451 500 ENSP00000368411/1-802 PTYGSCYTVD GVWTAQRPGI TH-------G VGLVLRVEQQ PHLPLLSTLA ENSTTRP00000016140/1-669 PSYGSCYTFN GVWAAQHPGI TH-------G VSLALGAKQQ DHLLLLPTEA ENSBTAP00000023511/1-568 PTYGSCYTFN GVWAAQRPGV TH-------R ISLVLRAEQL DHLPLLSTKA bmy_10023T0/1-450 SSYGSCYTFN GVWATQHPGL TH-------- ------AECQ P-----GPEA BACU001180/1-337 SSYGSCYTFN GVWAAQHPGL THAECQPGPG ISLVLGPEQH DHLPLLSTEA 501 550 ENSP00000368411/1-802 GIRVMVHGRN HTPFLGHHSF SVRPGTEATI SIRED----- -EVHRLGSPY ENSTTRP00000016140/1-669 GIKVVIRTRD HTPFLEHRGF S-RPGTETT- --RED----- -KVHRLGSPC ENSBTAP00000023511/1-568 GIKVMIHPQD HTPFLEHQGF SIRPGTETTI DIRED----- -EVHRLGSPY bmy_10023T0/1-450 GIAVTIHTRD HTPFLEHRGF SIRPGTETTV GIRED----- -EVHRLWSP- BACU001180/1-337 GIEVTIHTRD HTPFLEHRGF SIRPGTETTV GIREGLQGRA AELRRTPSP- 551 600 ENSP00000368411/1-802 GHCTAGGEGV EVELLHNTSY TRQACLVSCF QQLMVETCSC GYYLHPLPAG ENSTTRP00000016140/1-669 GHCTDSTGGV EVQLLYTASC TRQACLVSCF QPLMVETRSC GCFFYPLPTG ENSBTAP00000023511/1-568 GQCMDSTGSV DVQLLYNTSY TRQACLVSCF QHLMVETCSC GYFFYPLPAG bmy_10023T0/1-450 ---------- ---------- ---------- ---------C GH--RTDSTG BACU001180/1-337 ---------- ---------- QDEACLVSCF QPLMVETRSC GCFFYPLPAG 601 650 ENSP00000368411/1-802 AEYCSSARHP AWGHCFYRLY QDLETHRLPC TSRCPRPCRE SAFKLSTGTS ENSTTRP00000016140/1-669 AQHCNSVRHP AWVLFFLRLC KDLETHRLPC ASRCPRPCRE SSCKLSAGTS ENSBTAP00000023511/1-568 AEYCSYMRHP AWGHCFHHLY QKLKTHQLPC TTRCPRPCRE SSYKLSAGTS bmy_10023T0/1-450 GMTCSYCTTP ---------- ---------- ---------- ---------- BACU001180/1-337 AQYCISVRRP AWG------- ---------- ---------- ---------- 651 700 ENSP00000368411/1-802 RWPSAKSAGW TLATLGEQGL PHQSHRQRS- -SLAKINIVY QELNYRSVEE ENSTTRP00000016140/1-669 SWPSSKSA-- --------RA RPRSPSPRS- -NLAKVNIFS QELSYRTVDE ENSBTAP00000023511/1-568 RWPSSTSADW VLAVLGEPSR RNPWPSSASI ISLAKVNIFY QELNYRTVDE bmy_10023T0/1-450 ---------- ---------- ----PAP--- ---------- ---------- BACU001180/1-337 ---------- ---------- ----PAPRD- -TLLTARRHP Q--------- 701 750 ENSP00000368411/1-802 APVYSVPQLL SAMGSLCSLW FGASVLSLLE LLELLLDASA LTLVLGGRRL ENSTTRP00000016140/1-669 APVYSVPQLL SVTGSLWSPW FGSCVLSVVE MLELLLDAAA LALLLCCRQL ENSBTAP00000023511/1-568 TPVYSVPQLL SAMGSLWSLW FGSSVLSVVE VLELLLDAIA LTLLLCCRWL bmy_10023T0/1-450 ---------- ---------- -------VVE VLELLLDAAA LTLLLCCHQL BACU001180/1-337 -----VPQLL SATGSLWSLW FGSCVLSVVE VLELLLGAAA LALLLCCHQL 751 800 ENSP00000368411/1-802 RRAWFSWPRA SPASGASSIK PEASQMPPPA GGTSDDPEPS GPHLPRVMLP ENSTTRP00000016140/1-669 HGAR-GQPRA ATGMPSEPEA LVAG----SA GMTSNARGP- -LHLP---MA ENSBTAP00000023511/1-568 CGSR-GQPRA ATRVHPPSQR PASGPV--AA DTTSNAPGP- ---------- bmy_10023T0/1-450 RGAR-GQPRA ATGVPAPSQR PAGGRV--AA GMTSNARGPS STSHD---VA BACU001180/1-337 RGAR-GQPRA ATGVPAPSQR PAGGRV--AA GMTSNAQGPS SASHD---VA 801 850 ENSP00000368411/1-802 GVLAGVSAEE SWAGPQPLET LDT ENSTTRP00000016140/1-669 GLLAVLLE-- --VSPVGPET PDT ENSBTAP00000023511/1-568 ---------- ---------- --- bmy_10023T0/1-450 GAPAGVLA-- --GGQPRVGP GNS BACU001180/1-337 GAPAGVLA-- --GGQPGVGP GNS