KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:50 2014 Check: 00 .. Name: ENSP00000310406/1-783 Len: 1704 Check: 6924 Weight: 1.00 Name: ENSBTAP00000023514/1-790 Len: 1704 Check: 3203 Weight: 1.00 Name: BACU003506/1-1649 Len: 1704 Check: 1215 Weight: 1.00 Name: bmy_07796T0/1-796 Len: 1704 Check: 3835 Weight: 1.00 Name: ENSTTRP00000013675/1-784 Len: 1704 Check: 3199 Weight: 1.00 // 1 50 ENSP00000310406/1-783 MES------- ---------- ---------- ---------- ---------- ENSBTAP00000023514/1-790 MDT------- ---------- ---------- ---------- ---------- BACU003506/1-1649 MNGEEEESEE ERSGSQTESE EESSEMDDED YERRRSECVS EMLDLEKQFS bmy_07796T0/1-796 MEA------- ---------- ---------- ---------- ---------- ENSTTRP00000013675/1-784 MEA------- ---------- ---------- ---------- ---------- 51 100 ENSP00000310406/1-783 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023514/1-790 ---------- ---------- ---------- ---------- ---------- BACU003506/1-1649 ELKEKLFRER LSQLRLRLEE VGAERAPEYT EPLGGLQRSL KIRIQVAGIY bmy_07796T0/1-796 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013675/1-784 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000310406/1-783 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023514/1-790 ---------- ---------- ---------- ---------- ---------- BACU003506/1-1649 KGFCLDVIRN KYECELQGAK QHLEVNVPGA GRGVGTEVAS PAGLAEPLRL bmy_07796T0/1-796 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013675/1-784 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000310406/1-783 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023514/1-790 ---------- ---------- ---------- ---------- ---------- BACU003506/1-1649 FQSEKLLLYD TLQGELQERI QRLEEDRQSL DISSGPYIVY MLQEIDILED bmy_07796T0/1-796 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013675/1-784 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000310406/1-783 ------PGES GAG------- ---------- -----SPGAP SPSSFTTGHL ENSBTAP00000023514/1-790 ------PREP GTG------- ---------- -----PLGTP YPASFASGHL BACU003506/1-1649 WTAIKKPGPS SASTPERLMV EGGLAKLEAG SQGGFLLTHP GKSSRVPSEE bmy_07796T0/1-796 ------PGES GAG------- ---------- -----LLGAP NPTSFAPGHL ENSTTRP00000013675/1-784 ------PGES GAG------- ---------- -----LLGAP SPTSFAPGHL 251 300 ENSP00000310406/1-783 AREKPAQDPL YDVPNASGGQ AGGPQRPGRV VSLRERLLLT RPVWLQLQAN ENSBTAP00000023514/1-790 EREKPAQDPR YDVPGAGGVQ AGGSQRPGRT VSLRERLLLT RPVWLQLRAN BACU003506/1-1649 KIRWPAQDPL YDVPDASGAQ AGEPQQPGRT VSLRERLLLT RPVWLQLRAN bmy_07796T0/1-796 EREKLVK--L EGQP------ --GPEPPTR- ---------- ---------- ENSTTRP00000013675/1-784 EREKPAQDPL YDVPDAGGAR AGGPQQPGRT VSLRERLLLT RPVWLQLRAN 301 350 ENSP00000310406/1-783 AAAALHMLRT EPPGTFLVRK SNTRQCQALC MRLPEASGPS FVSSHYILES ENSBTAP00000023514/1-790 EAAALHVLRT EPPGTFLVRK SNSRQCQALC VRLPEASGPS FVSSHCIQET BACU003506/1-1649 AAAALHVLRT EPPGTFLVRK SNTRQCQALC MRLPEASGPS FVSSHYIQES bmy_07796T0/1-796 -------VRS Q---TFLVRK SNTRQCQALC MRLPEASGPS FVSSHYIQES ENSTTRP00000013675/1-784 AAAALHVLRT EPPGTFLVRK SNTRQCQALC MRLPEASGPS FVSSHYIQES 351 400 ENSP00000310406/1-783 PGGVSLEGSE LMFPDLVQLI CAYCHTRDIL LLPLQLPRAI HHAATHKELE ENSBTAP00000023514/1-790 AEGVSLEGSE LVFLDLVQLI CAYCHTRDIL LLPLQLPRAI RQAATHKELE BACU003506/1-1649 PGGISLEGSE LVFLDLVQLI CAYCHTRDIL LLPLQLPRAI CQAATRKELE bmy_07796T0/1-796 PGGVSLEGSE LVFLDLVQLI CAYCHTRDIL LLPLQLPRAI CQAATRKELE ENSTTRP00000013675/1-784 PGGVSLEGSE LVFLDLVQLI CAYCHTRDIL LLPLQLPRAI CQAATRKELE 401 450 ENSP00000310406/1-783 AISHLGI--- ---------- ---------- ---------- ---------- ENSBTAP00000023514/1-790 AISHLGM--- ---------- ---------- ---------- ---------- BACU003506/1-1649 AISHLGV--- ---------- ---------- ---------- ---------- bmy_07796T0/1-796 AISHLGIGKG SPATHCSDGQ AEAKREREGM GTQPEACAFP LVGPLPEPPE ENSTTRP00000013675/1-784 AISHLGI--- ---------- ---------- ---------- ---------- 451 500 ENSP00000310406/1-783 --------EF WSSSLNIKAQ RGPAGGPVLP QLKARSPQEL DQGTGAALCF ENSBTAP00000023514/1-790 --------EF WSSSLNTKAQ PGPSEGPPLP RLKPRPPQEL DQGTGAALCF BACU003506/1-1649 --------EF WSSSLNTKAQ PGPSEGPLLP RLKPRSPQEL DQGTGAALCF bmy_07796T0/1-796 APTCFSSLEF WSSSLNTKAQ PGPSEGPLLP RLKPRSPQEL DQGTGAALCF ENSTTRP00000013675/1-784 --------EF WSSSLNTKAQ PGPSEGPLLP RLKPRSPQEL DQGTGAALCF 501 550 ENSP00000310406/1-783 FNPLFPGDLG PTKREKFKRS FKVRVSTETS SPLSPPAVPP PPVPVLPGAV ENSBTAP00000023514/1-790 FNPLFPGDLG HTKREKFKRS FKVRVSTETS SPLSPPAVPP PPVPVLPGTV BACU003506/1-1649 FNPLFPGDLG PTKREKFKRS FKVRVSTETS SPLSPPAVPP PPVPVLPGTA bmy_07796T0/1-796 FNPLFPGDLG PTKREKFKRS FKVRVSTETS SPLSPPAVPP PPVPVLPGTA ENSTTRP00000013675/1-784 FNPLFPGDLG PTKREKFKRS FKVRVSTETS SPLSPPAVPP PPVPVLPGTA 551 600 ENSP00000310406/1-783 PSQTERLPPC QLLRRESSVG YRVPAGSGPS LPPMPSLQEV DCGSPSSSEE ENSBTAP00000023514/1-790 PNQTERLPPR QLLRRESSVG YRVPGGAGPS LPPLPSLQEV DCASPSSSEE BACU003506/1-1649 PNQTERLPSR QLLRRESSVG YRVPGGTGPS LPPLPSLQEV DCGSPSSSEE bmy_07796T0/1-796 PNQTERLPSR QLLRRESSVG YRVPGGTGPS LPPLPSLQEV DCGSPSSSEE ENSTTRP00000013675/1-784 PNQTERLPSH QLLRRESSVG YRVPGGTGPS LPPLPSLQEV DCGSPSSSEE 601 650 ENSP00000310406/1-783 E-GVPGSRGS PATSPHLG-- -RRRPLLRSM SAAFCSLLAP ERQVGRAAAA ENSBTAP00000023514/1-790 EGGVPGSQGS PATSPHLGYR RRRRPLLRSM SAAFCSLLAP ERQVGRAAAA BACU003506/1-1649 E-GVPGSQGS PATSPRLG-- -RRRPLLRSM SAAFCSLLAP ERQVGRAAAA bmy_07796T0/1-796 E-GVPGSQGS PATSPRLG-- -GRRPLLRSM SAAFCSLLAP ERQVGRAAAA ENSTTRP00000013675/1-784 E-GVPGSQGS PATSPRLG-- -RRRPLLRSM SAAFCSLLAP ERQVGRAAAA 651 700 ENSP00000310406/1-783 LMQDRHTAAG QLVQDLLTQV RAGPEPQELQ GIRQALSRAR AMLSAELGPE ENSBTAP00000023514/1-790 LTQDRHTAVG QLVQDLLTQV RASPEPRELQ AVREALSRAR AMLSAELSPE BACU003506/1-1649 LMQDRHTAVG QMVQDLLTQV RAGPETRELQ GIREALSRAR AMLSAELGPE bmy_07796T0/1-796 LMQDRHTAVG QMVQDLLTQV RAGPETRELQ GIREALSRAR AMLSAELGPE ENSTTRP00000013675/1-784 LMQDRHTAVG QLVQDLLTQV RAGPETQELQ GIREALSRAR AMLSAELGPE 701 750 ENSP00000310406/1-783 KLLSPKRLEH VLEKSLHCSV LKPLRPILAA RLRRRLAADG SLGRLAEGLR ENSBTAP00000023514/1-790 KLLSPDRLEQ VLEKSLHRSV LKPLRPILVA RLRHRLSANS SLGRLAEGLR BACU003506/1-1649 KLLPPERLEC VLEKSLHRSV LKPLRPILVA RLRRRLSANG SLGRLAEGLC bmy_07796T0/1-796 KLLPPERLEC VLEKSLHRSV LKPLRPILVA RLRRRLSANG SLGRLAEGLC ENSTTRP00000013675/1-784 KLLPPERLEC VL-KSLHRSV LKPLRPILMA RLRRRLSTNG SLGRLT-GLC 751 800 ENSP00000310406/1-783 LARAQGPGAF GSHLSLPSPV ELEQVRQKLL QLLRTYSPSA QVKRLLQACK ENSBTAP00000023514/1-790 LARARGASAF GSHLSLPSPV EMEQVRQKLL QLLRAYSPSA QVKRLLQACK BACU003506/1-1649 LARAQGPRAF GSHLSLPSPV EMEQVRQKLL QLLRAYSPSA QVKRLLQACK bmy_07796T0/1-796 LARAQGPRAF GSHLSLPSPV EMEQVRQKLL QLLRAYSPSA QVKRLLQACK ENSTTRP00000013675/1-784 LARAQGPRAF GSHLSLPSPV EMEQVRQKLL QLLRAYSPSA QVKRLLQACK 801 850 ENSP00000310406/1-783 LLYMALRTQE GEGAGADEFL PLLSLVLAHC DLPELLLEAE YMSELLEPSL ENSBTAP00000023514/1-790 LLYTALRTQA GEGAGADEFL PLLSLVLAHC DLPELLLEAE YMSELLEPAL BACU003506/1-1649 LLYTALRTQA GEGAGADEFL PLLSLVLAQC DLPELLLEAE YMSELLEPAL bmy_07796T0/1-796 LLYTALRTQA GEGAGADEFL PLLSLVLAQC DLPELLLEAE YMSELLEPAL ENSTTRP00000013675/1-784 LLYTALRTQA GEGAGADEFL PLLSLVLAQC DLPELLLEAE YMSELLEPAL 851 900 ENSP00000310406/1-783 LTGEGGYYLT SLSASLALLS GLGQAHTLPL SPVQELRRSL SLWEQRRLPA ENSBTAP00000023514/1-790 LTGEGGYYLT SLSASLALLS GLTEAHTLPL SPSQELQRSL SLWEQRRLPA BACU003506/1-1649 LTGEGGYYLT SLSASLVLLS GLNEAHTLPL SPSQELQCSL SLWEQRRLPA bmy_07796T0/1-796 LTGEGGYYLT SLSASLVLLS GLNEAHALPL SPSQELQCSL SLWEQRRLPA ENSTTRP00000013675/1-784 LTGEGGYYLT SLSASLVLLS GLNEAHTLPL SPSQELQSSL SLWEQRRLPA 901 950 ENSP00000310406/1-783 THCFQHLLRV AYQDPSSGCT SKTLAVPPEA SIATLNQLCA TKFRVTQPNT ENSBTAP00000023514/1-790 THCFQHLLRV AYQDPSSGCT SKTLAVPPEA SIATLNKLCA TKFRVTHPDT BACU003506/1-1649 THSFQHLLRV AYQDPSSGCT SKTLAVPPGA SIAMLNKLCA TKFRVTQPDT bmy_07796T0/1-796 THSFQHLLRV AYQDPSSGCT SKTLAVPPGA SIAMLNKLCA TKFRVTQPDT ENSTTRP00000013675/1-784 THSFQHLLRV AYQDPSSGCT SKTLAVPPGA SIAMLNKLCA TKFRVTQPDT 951 1000 ENSP00000310406/1-783 FGLFLYKEQG YHRLPPGALA HRLPTTGYLV YRRAEWPETQ GA---VTEEE ENSBTAP00000023514/1-790 FGLFLYKGQD YQRLPPGALA HRLPTAGYLV YRRAEQPETP GASPGAATGE BACU003506/1-1649 FGLFLYKGQD YHRLPPGALA HKLPTTGYLV YRRTEWRETQ GASPGAATEK bmy_07796T0/1-796 FGLFLYKGQD YHRLPPGALA HKLPTTGYLV YRRTEWRETQ GASPGAATEK ENSTTRP00000013675/1-784 FSLFLYKEED YHRLPPGALA HQLPTTGYLI YRRTEWRETQ GTSPGAALEE 1001 1050 ENSP00000310406/1-783 GSGQSEARSR GEEQGCQGDG DAGVKA---- SPRDIREQSE TTAE------ ENSBTAP00000023514/1-790 GSGGPEAGDR EEDKEGRGTG ETKAKT---- SPRDGRGESE TVAE------ BACU003506/1-1649 GSGRPEAEGR EEEKGGRGDG DTKRQARHCQ PQRPLRGFTW TTGDQDTAFT bmy_07796T0/1-796 GSGRPEAEGR EEEKGGRGDG DTKVKA---- SPRDSRGEAE TMAE------ ENSTTRP00000013675/1-784 GSGRPEAEGR EQEKGGRGDG DTKVKA---- SLRDSRGESE TMAE------ 1051 1100 ENSP00000310406/1-783 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023514/1-790 ---------- ---------- ---------- ---------- ---------- BACU003506/1-1649 NWAQPATGGP CPAQRCAALE ASGEHRWLEG SCTLAVDGYL CQFGFEGSCP bmy_07796T0/1-796 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013675/1-784 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000310406/1-783 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023514/1-790 ---------- ---------- ---------- ---------- ---------- BACU003506/1-1649 ALPDEAGQAG PAVYTTPFHL VSAEFQWLPF GSVAAVPCQA GREASLLCVK bmy_07796T0/1-796 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013675/1-784 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSP00000310406/1-783 ---GGQGQAQ EGP------- ---------- ---------- ---------- ENSBTAP00000023514/1-790 ---GAEDQAR GDP------- ---------- ---------- ---------- BACU003506/1-1649 QPDGGVGWSR TGPLCPGTGC GPDNGGCEHE CVEEADGRVS CRCTEGFRLA bmy_07796T0/1-796 ---GAEDQAR GGP------- ---------- ---------- ---------- ENSTTRP00000013675/1-784 ---GGEDQAR GGS------- ---------- ---------- ---------- 1201 1250 ENSP00000310406/1-783 ---------- --------AQ PGEPE----- ---------- ---------- ENSBTAP00000023514/1-790 ---------- --------TQ PRGPE----- ---------- ---------- BACU003506/1-1649 VDGRSCEDPC AHALCEQQCE PGGPQGYSCH CRLGFRPAED EPHRCVDTDE bmy_07796T0/1-796 ---------- --------AQ PRGPE----- ---------- ---------- ENSTTRP00000013675/1-784 ---------- --------AQ LRGPE----- ---------- ---------- 1251 1300 ENSP00000310406/1-783 ---------- ---------- ---------- ---------A EGSRAAEE-- ENSBTAP00000023514/1-790 ---------- ---------- ---------- ---------T EESQAAEE-- BACU003506/1-1649 CQIAGVCQQM CVNYVGGFEC YCSEGHELEA DGISCSPAGA MGARASQDLG bmy_07796T0/1-796 ---------- ---------- ---------- ---------A EGSQAAEE-- ENSTTRP00000013675/1-784 ---------- ---------- ---------- ---------A EGSQAAEE-- 1301 1350 ENSP00000310406/1-783 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023514/1-790 ---------- ---------- ---------- ---------- ---------- BACU003506/1-1649 DELLDDGEDE EDEDEAWEVF DGGWTEVPGI PWMEATQSPD FGLAYRPSFP bmy_07796T0/1-796 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013675/1-784 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSP00000310406/1-783 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023514/1-790 ---------- ---------- ---------- ---------- ---------- BACU003506/1-1649 EDRESRMPYL DPTWPPPLSA PRVPYHSSVL SVTRPVVVSA TRPPLPSAHQ bmy_07796T0/1-796 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013675/1-784 ---------- ---------- ---------- ---------- ---------- 1401 1450 ENSP00000310406/1-783 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023514/1-790 ---------- ---------- ---------- ---------- ---------- BACU003506/1-1649 PPIVSATRPP LTPAPQPPVV PAIHPALPSD HQFPKISANY PDLPSAHRPP bmy_07796T0/1-796 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013675/1-784 ---------- ---------- ---------- ---------- ---------- 1451 1500 ENSP00000310406/1-783 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023514/1-790 ---------- ---------- ---------- ---------- ---------- BACU003506/1-1649 VISATHPGPT PAHRPPIISA KYPELFPAHQ SPMFPDTQVV DTQNTTHLPR bmy_07796T0/1-796 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013675/1-784 ---------- ---------- ---------- ---------- ---------- 1501 1550 ENSP00000310406/1-783 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023514/1-790 ---------- ---------- ---------- ---------- ---------- BACU003506/1-1649 IPANHAPLVT TSSARQTPVT PDIPVLKAQA THHPITSTVQ PSLTTTSRPP bmy_07796T0/1-796 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013675/1-784 ---------- ---------- ---------- ---------- ---------- 1551 1600 ENSP00000310406/1-783 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023514/1-790 ---------- ---------- ---------- ---------- ---------- BACU003506/1-1649 VSPAHQVPVP AATQPPAFHT PLPPESPTNQ TSPASPTHPH SKAPQVPREG bmy_07796T0/1-796 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013675/1-784 ---------- ---------- ---------- ---------- ---------- 1601 1650 ENSP00000310406/1-783 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023514/1-790 ---------- ---------- ---------- ---------- ---------- BACU003506/1-1649 TPDPNLAPWL PSAVPTALGE ASPAGRSRRD DRWLLVALLV PTCVFLVVLL bmy_07796T0/1-796 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013675/1-784 ---------- ---------- ---------- ---------- ---------- 1651 1700 ENSP00000310406/1-783 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023514/1-790 ---------- ---------- ---------- ---------- ---------- BACU003506/1-1649 ALGIVYCTRC GPHAPNKRVT DCYRWVTHAG SKGSTEPVPH RGSLTGVQTC bmy_07796T0/1-796 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013675/1-784 ---------- ---------- ---------- ---------- ---------- 1701 1750 ENSP00000310406/1-783 ---- ENSBTAP00000023514/1-790 ---- BACU003506/1-1649 RTSV bmy_07796T0/1-796 ---- ENSTTRP00000013675/1-784 ----