KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:51 2014 Check: 00 .. Name: ENSTTRP00000000790/1-1197 Len: 1223 Check: 1711 Weight: 1.00 Name: bmy_12897T0/1-752 Len: 1223 Check: 4835 Weight: 1.00 Name: ENSP00000297494/1-1203 Len: 1223 Check: 9529 Weight: 1.00 Name: BACU000709/1-1218 Len: 1223 Check: 4053 Weight: 1.00 Name: ENSBTAP00000023515/1-1205 Len: 1223 Check: 887 Weight: 1.00 // 1 50 ENSTTRP00000000790/1-1197 MGNLKSVGQE PGPPCGLGLG LGLGLCSKQG AASPAPEPSR APAPAPPPAP bmy_12897T0/1-752 --MLNAVGEV SG-------- -----ARPKG HTLLSHDPSP APN------- ENSP00000297494/1-1203 MGNLKSVAQE PGPPCGLGLG LGLGLCGKQG PATPAPEPSR APASLLPPAP BACU000709/1-1218 MGNLKSVGQE PGPPCGLGLG LGLGLCSKQG PASPAPEPSR APPPAPPPAP ENSBTAP00000023515/1-1205 MGNLKSVGQE PGPPCGLGLG LGLGLCGKQG PASPAPEPSR APAPATPHAP 51 100 ENSTTRP00000000790/1-1197 DH-----SPQ LTRPPEGPKF PRVKNW-AGS ITYDTLCAQS -QDGPCTPRR bmy_12897T0/1-752 -------SPQ LTRPPEGPKF PRVKNWEVGS ITYDTLCAQS QQDGPCTPRR ENSP00000297494/1-1203 EHSPP--SSP LTQPPEGPKF PRVKNWEVGS ITYDTLSAQA QQDGPCTPRR BACU000709/1-1218 DH-----SPQ LTRPPEGPKF PRVKNWEVGS ITYDTLCAQS QQDGPCTPRR ENSBTAP00000023515/1-1205 DHSPAPNSPT LTRPPEGPKF PRVKNWELGS ITYDTLCAQS QQDGPCTPRR 101 150 ENSTTRP00000000790/1-1197 CLGSLVFPRK LQSRPSQGPP PPEQLLSQAR DFINQYYSSI KRSGSQAHKE bmy_12897T0/1-752 CLGSLVFPRK LQSRPSQGPP PTEQLLSQAR DFINQYYSSI KRSGSQAHKE ENSP00000297494/1-1203 CLGSLVFPRK LQGRPSPGPP APEQLLSQAR DFINQYYSSI KRSGSQAHEQ BACU000709/1-1218 CLGSLVFPRK LQSRPSQGPP PPEQLLSQAR DFINQYYSSI KRSGSQAHKE ENSBTAP00000023515/1-1205 CLGSLVLPRK LQTRPSPGPP PAEQLLSQAR DFINQYYSSI KRSGSQAHEE 151 200 ENSTTRP00000000790/1-1197 RLQEVEAEVA ATGTYQLRES ELVFGAKQAW RNAPRCVGRI QWGKLQVFDA bmy_12897T0/1-752 RLQEVEAEVG ATGTYQLRES ELVFGAKQAW RNAPRCVGRI QWGKLQVFDA ENSP00000297494/1-1203 RLQEVEAEVA ATGTYQLRES ELVFGAKQAW RNAPRCVGRI QWGKLQVFDA BACU000709/1-1218 RLQEVEAEVG ATGTYQLRES ELVFGAKQAW RNAPRCVGRI QWGKLQVFDA ENSBTAP00000023515/1-1205 RLQEVEAEVA STGTYHLRES ELVFGAKQAW RNAPRCVGRI QWGKLQVFDA 201 250 ENSTTRP00000000790/1-1197 RDCSSAQEMF TYICNHVKYA TNRGNLRSAI TVFPQRAPGR GDFRIWNSQL bmy_12897T0/1-752 RDCSSAQEMF TCICNHIKYA TNRGNLRSAI TVFPQRTPGR GDFRIWNSQL ENSP00000297494/1-1203 RDCRSAQEMF TYICNHIKYA TNRGNLRSAI TVFPQRCPGR GDFRIWNSQL BACU000709/1-1218 RDCSSAQEMF TCICNHIKYA TNRGNLRSAI TVFPQRTPGR GDFRIWNSQL ENSBTAP00000023515/1-1205 RDCSSAQEMF TYICNHIKYA TNRGNLRSAI TVFPQRAPGR GDFRIWNSQL 251 300 ENSTTRP00000000790/1-1197 VRYAGYRQQD GSVRGDPANV EITELCIQHG WTPGNGRFDV LPLLLQTPDE bmy_12897T0/1-752 VRYAGYRQQD GSVRGDPANV EITELCIQHG WTPGNGRFDV LPLLLQTPDE ENSP00000297494/1-1203 VRYAGYRQQD GSVRGDPANV EITELCIQHG WTPGNGRFDV LPLLLQAPDD BACU000709/1-1218 VRYAGYRQQD GSVRGDPANV EITELCIQHG WTPGNGRFDV LPLLLQAPDE ENSBTAP00000023515/1-1205 VRYAGYRQQD GSVRGDPANV EITELCIQHG WTPGNGRFDV LPLLLQAPDE 301 350 ENSTTRP00000000790/1-1197 APELFVLPPE LVLEVPLEHP TLEWFSALGL RWYALPAVSN MLLEIGGLEF bmy_12897T0/1-752 APELFVLPPE LVLEVPLEHP TLEWFSALGL RWYALPAVSN MLLEIGGLEF ENSP00000297494/1-1203 PPELFLLPPE LVLEVPLEHP TLEWFAALGL RWYALPAVSN MLLEIGGLEF BACU000709/1-1218 APELFVLPPE LVLEVPLEHP TLEWFSALGL RWYALPAVSN MLLEIGGLEF ENSBTAP00000023515/1-1205 APELFVLPPE LVLEVPLEHP TLEWFAALGL RWYALPAVSN MLLEIGGLEF 351 400 ENSTTRP00000000790/1-1197 PAAPFSGWYM STEIGMRDLC DPHRYNILED VAVCMDLDTR TTSSLWKDKA bmy_12897T0/1-752 PAAPFSGWYM STEIGTRNLC DPHRYNILED VAVCMDLDTR TTSSLWKDKA ENSP00000297494/1-1203 PAAPFSGWYM STEIGTRNLC DPHRYNILED VAVCMDLDTR TTSSLWKDKA BACU000709/1-1218 PAAPFSGWYM STEIGTRDLC DPHRYNILED VAVCMDLDTR TTSSLWKDKA ENSBTAP00000023515/1-1205 SAAPFSGWYM STEIGTRNLC DPHRYNILED VAVCMDLDTR TTSSLWKDKA 401 450 ENSTTRP00000000790/1-1197 AVEINLAVLH SYQLAKVTIV DHHAATASFM KHLENEQKAR GGCPADWAWI bmy_12897T0/1-752 AVEINLAVLH SYQLAKVTIV DHHAATASFM KHLENEQKAR GGCPADWAWI ENSP00000297494/1-1203 AVEINVAVLH SYQLAKVTIV DHHAATASFM KHLENEQKAR GGCPADWAWI BACU000709/1-1218 AVEINLAVLH SYQLAKVTIV DHHAATASFM KHLENEQKAR GGCPADWAWI ENSBTAP00000023515/1-1205 AVEINLAVLH SFQLAKVTIV DHHAATVSFM KHLDNEQKAR GGCPADWAWI 451 500 ENSTTRP00000000790/1-1197 VPPISGSLTP VFHQEMVNYV LSPAFRYQPD PWKGSTAKGT GITRKKTFKE bmy_12897T0/1-752 VPPISGSLTP VFHQEMVNYV LSPAFRYQPD PWKGSTAKGT GITRKKTFKE ENSP00000297494/1-1203 VPPISGSLTP VFHQEMVNYF LSPAFRYQPD PWKGSAAKGT GITRKKTFKE BACU000709/1-1218 VPPISGSLTP VFHQEMVNYV LSPAFRYQPD PWKGSTAKGT GITRKKTFKE ENSBTAP00000023515/1-1205 VPPISGSLTP VFHQEMVNYI LSPAFRYQPD PWKGSATKGA GITRKKTFKE 501 550 ENSTTRP00000000790/1-1197 VANAVKISAS LMGTVMAKRV KATILYASET GRAQSYAQQL GRLFRKAFDP bmy_12897T0/1-752 VANAVKISAS LMGTVMAKRV KATILYASET GRAQSYAQQL GRLFRKAFDP ENSP00000297494/1-1203 VANAVKISAS LMGTVMAKRV KATILYGSET GRAQSYAQQL GRLFRKAFDP BACU000709/1-1218 VANAVKISAS LMGTVMAKRV KATILYASET GRAQSYAQQL GRLFRKAFDP ENSBTAP00000023515/1-1205 VANAVKISAS LMGTLMAKRV KATILYASET GRAQSYAQQL GRLFRKAFDP 551 600 ENSTTRP00000000790/1-1197 RVLCMDEYDV VSLEHETLVL VVTSTFGNGD PPENGESFAA ALMEMSGPYN bmy_12897T0/1-752 RVLCMDEYDV VSLEHETLVL VVTSTFGNGD PPENGESFAA ALMEMSGPYN ENSP00000297494/1-1203 RVLCMDEYDV VSLEHETLVL VVTSTFGNGD PPENGESFAA ALMEMSGPYN BACU000709/1-1218 RVLCMDEYDV VSLEHETLVL VVTSTFGNGD PPENGESFAA ALMEMSGPYN ENSBTAP00000023515/1-1205 RVLCMDEYDV VSLEHEALVL VVTSTFGNGD PPENGESFAA ALMEMSGPYN 601 650 ENSTTRP00000000790/1-1197 SSPRPEQHKS YKIRFNRVS- SDPMVSSWRR KRKESXXXXX XXXXXXXXXX bmy_12897T0/1-752 SSPRPEQHKS YKIRFNSISC SDPLVSSWRR KRKESSNTDS AGALGTLRFC ENSP00000297494/1-1203 SSPRPEQHKS YKIRFNSISC SDPLVSSWRR KRKESSNTDS AGALGTLRFC BACU000709/1-1218 SSPRPEQHKS YKIRFNSISC SDPLVSSWRR KRKESSNTDS AGALGTLRFC ENSBTAP00000023515/1-1205 SSPRPEQHKS YKIRFNSVSC SDPLVSSWRR KRKESSNTDS AGALGTLRFC 651 700 ENSTTRP00000000790/1-1197 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_12897T0/1-752 VFGLGSRAYP HFCAFARAVD TRLEELGGER LLQLGQGDEL CGQEEAFRGW ENSP00000297494/1-1203 VFGLGSRAYP HFCAFARAVD TRLEELGGER LLQLGQGDEL CGQEEAFRGW BACU000709/1-1218 VFGLGSRAYP HFCAFARAVD TRLEELGGER LLQLGQGDEL CGQEEAFRAW ENSBTAP00000023515/1-1205 VFGLGSRAYP HFCAFARAVD TRLEELGGER LLQLGQGDEL CGQEEAFRGW 701 750 ENSTTRP00000000790/1-1197 XXXXXXASCE TFCVGEDAQA AAQDIFSPKR SWKRQRYRLS AQAEGLQLLP bmy_12897T0/1-752 AQAAFQME-- ---------- ---------- ---------- ---------- ENSP00000297494/1-1203 AQAAFQAACE TFCVGEDAKA AARDIFSPKR SWKRQRYRLS AQAEGLQLLP BACU000709/1-1218 AQAAFQASCE TFCVGEDAKA AAQDIFSPKQ SWEGQRYRLS AQAEGLQLLP ENSBTAP00000023515/1-1205 AKAAFQASCE TFCVGEEAKA AAQDIFSPKR SWKRQRYRLS TQAEGLQLLP 751 800 ENSTTRP00000000790/1-1197 GLIHVHRRKM FQATVLLVEN LQSSKSTRAT ILVRLDTGSQ EGLQYQPGDH bmy_12897T0/1-752 ---------- ---------- ---------- -------GGD WG-------- ENSP00000297494/1-1203 GLIHVHRRKM FQATIRSVEN LQSSKSTRAT ILVRLDTGGQ EGLQYQPGDH BACU000709/1-1218 GLIHVHRRKM FQATVLLVEN LQSSKSTRAT ILVRLDTGGQ EGLQYQPGDH ENSBTAP00000023515/1-1205 GLIHVHRRKM FQATVLSVEN LQSSKSTRAT ILVRLDTAGQ EGLQYQPGDH 801 850 ENSTTRP00000000790/1-1197 IGICPPNRPG LVEALMSRVE DPPPPTESVA VEQLEKGSPG GPPPGWVRDP bmy_12897T0/1-752 -----PSRPS SISRI----- ---SAAELLA TQAL----PG G----W-RAS ENSP00000297494/1-1203 IGVCPPNRPG LVEALLSRVE DPPAPTEPVA VEQLEKGSPG GPPPGWVRDP BACU000709/1-1218 IGICPPNRPG LVEALMSRVE DPPPPTESVA VEQLEKGSPG GPPPGRGRDP ENSBTAP00000023515/1-1205 IGICPPNRPG LVEALLSRVE DPPPPTESVA VEQLEKGSPG GPPPSWVRDP 851 900 ENSTTRP00000000790/1-1197 RLPPCTLRQA LTFFLDITSP PSPQLLRLLS TLAEEPSEQQ ELGATSQDPR bmy_12897T0/1-752 AL-------- ------TSSP PRP------- ---------- --------PV ENSP00000297494/1-1203 RLPPCTLRQA LTFFLDITSP PSPQLLRLLS TLAEEPREQQ ELEALSQDPR BACU000709/1-1218 RLPPCTLRQA LTFFLDITSP PSPQLLRLLS TLAEEPSEQQ QLETLSQDPR ENSBTAP00000023515/1-1205 RLPPCTLRQA LTFFLDITSP PSPRLLRLLS TLAEEPSEQQ ELETLSQDPR 901 950 ENSTTRP00000000790/1-1197 RYEEWKWFRC PTLLEVLEQF PSVALPAPLL LTQLPLLQPR YYSVSSAPST bmy_12897T0/1-752 RRSAW----- ---------- ---------- -GRMPRPQPR ---TSSAPN- ENSP00000297494/1-1203 RYEEWKWFRC PTLLEVLEQF PSVALPAPLL LTQLPLLQPR YYSVSSAPST BACU000709/1-1218 RYEEWKWFRC PTLLEVLEQF PSVALPAPLL LTQLPLLQPR YYSVSSAPSA ENSBTAP00000023515/1-1205 RYEEWKWFRC PTLLEVLEQF PSVALPAPLL LTQLPLLQPR YYSVSSAPNA 951 1000 ENSTTRP00000000790/1-1197 HPGEIHLTVA VLAYRTQDGL GPLHYGVCST WLSQLKAGDP VPCFIRGAPS bmy_12897T0/1-752 ---------- ---------- ---------- ---------- ------GAGN ENSP00000297494/1-1203 HPGEIHLTVA VLAYRTQDGL GPLHYGVCST WLSQLKPGDP VPCFIRGAPS BACU000709/1-1218 HPGEIHLTVA VLAYRTQDGL GPLHYGVCST WLSQLKTGDP VPCFIRGAPS ENSBTAP00000023515/1-1205 HPGEVHLTVA VLAYRTQDGL GPLHYGVCST WLSQLKTGDP VPCFIRGAPS 1001 1050 ENSTTRP00000000790/1-1197 FRLPPDPSLP CILVGPGTGI APFRGFWQER LHDIESKGLQ PAPMTLVFGC bmy_12897T0/1-752 AR-------- ------GTG- ---------- ---------- ---------- ENSP00000297494/1-1203 FRLPPDPSLP CILVGPGTGI APFRGFWQER LHDIESKGLQ PTPMTLVFGC BACU000709/1-1218 FRLPPDPSLP CILVGPGTGI APFRGFWQER LHDIESKGLQ PAPMTLVFGC ENSBTAP00000023515/1-1205 FRLPPDPYVP CILVGPGTGI APFRGFWQER LHDIESKGLQ PAPMTLVFGC 1051 1100 ENSTTRP00000000790/1-1197 RCSQLDHLYR EEVQDAQQRG VFGRVLTAFS REPNSPKTYV QDILRSELAA bmy_12897T0/1-752 ---------- ---------- ---------- ---------- ---------- ENSP00000297494/1-1203 RCSQLDHLYR DEVQNAQQRG VFGRVLTAFS REPDNPKTYV QDILRTELAA BACU000709/1-1218 RCSQLDHLYR EEVQDAQQRG VFGRVLTAFS REPDSPKTYV QDILRTELAA ENSBTAP00000023515/1-1205 RCSQLDHLYR DEVQDAQERG VFGRVLTAFS REPDSPKTYV QDILRTELAA 1101 1150 ENSTTRP00000000790/1-1197 EVHRVLCLER GHMFVCGDVT MATSVLQTVQ RILATEGDXX XXXXXXXXXX bmy_12897T0/1-752 ---------- ---------- ---------- ---------- ---------- ENSP00000297494/1-1203 EVHRVLCLER GHMFVCGDVT MATNVLQTVQ RILATEGDME LDEAGDVIGV BACU000709/1-1218 EVHRVLCLER GHMFVCGDVT MATSVLQTVQ RILATEGDME LDEAGDVIGV ENSBTAP00000023515/1-1205 EVHRVLCLER GHMFVCGDVT MATSVLQTVQ RILATEGDME LDEAGDVIGV 1151 1200 ENSTTRP00000000790/1-1197 XX-------- ---------- DQQRYHEDIF GLTLRTQEVT SRIRTQSFSL bmy_12897T0/1-752 ---------- ---------- ---------- ---------- ---------- ENSP00000297494/1-1203 LR-------- ---------- DQQRYHEDIF GLTLRTQEVT SRIRTQSFSL BACU000709/1-1218 LRDQQRYHED IFGLTLRTQE DQQRYHEDIF GLTLRTQEVT SRIRTQSFSL ENSBTAP00000023515/1-1205 LR-------- ---------- DQQRYHEDIF GLTLRTQEVT SRIRTQSFSL 1201 1250 ENSTTRP00000000790/1-1197 QERHMRGAVP WAFDPPGPDT PGP bmy_12897T0/1-752 ---------- ---------- --- ENSP00000297494/1-1203 QERQLRGAVP WAFDPPGSDT NSP BACU000709/1-1218 QERHMRGAVP WAFDPPSPDT PGP ENSBTAP00000023515/1-1205 QERHLRGAVP WAFDPPGPDT PGP