KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:56 2014 Check: 00 .. Name: ENSP00000389009/1-950 Len: 989 Check: 1122 Weight: 1.00 Name: ENSBTAP00000023529/1-963 Len: 989 Check: 761 Weight: 1.00 Name: ENSTTRP00000012566/1-385 Len: 989 Check: 9065 Weight: 1.00 Name: bmy_07832T0/1-977 Len: 989 Check: 3962 Weight: 1.00 Name: BACU003535/1-786 Len: 989 Check: 5971 Weight: 1.00 // 1 50 ENSP00000389009/1-950 ---------- ---------- ------MLSL DPSGPEWDCP LGSKDL-EEE ENSBTAP00000023529/1-963 ---------- ---------- ------QLSL DPLGPEWDCP LGSKDLEEEE ENSTTRP00000012566/1-385 ---------- ---------- ---------- ---------- ---------- bmy_07832T0/1-977 MVSLPWFLPT KAQAPNQREG PEGSIGHLSL DPLGPECDSP LGSKDLEEEE BACU003535/1-786 ---------- ---------- ------MLSL DPLGPECDSP LGSKDLEEEE 51 100 ENSP00000389009/1-950 GPWGGGSGLP PTGCFPGSWR QDVGLDCKGS PEGAEARAWT VYYYSLLQSC ENSBTAP00000023529/1-963 GPWGGGSGLP PPGCFPGSWR HDVGLDCKGA SEGADAQAWT VHYYSLLQSC ENSTTRP00000012566/1-385 ---------- ---------- ---------- ---------- ---------- bmy_07832T0/1-977 GPWGGGSGLP PPGCFHGSWR HDVALDCKGS PEGAEARAWT VYYYSLLQSC BACU003535/1-786 GPWGGGSGLP PPGCFHGSWR HDVALDCKGS PEGAEARAWT VYYYSLLQSC 101 150 ENSP00000389009/1-950 LQQAGLPETQ DRGQVPRT-- -----GCPGA EVTLCVLGSP STFLPVLLEG ENSBTAP00000023529/1-963 LQQAGLPETQ DRSQAPRTGA RGLQGGCPGA EVTLCILGSP STFLSVLLEA ENSTTRP00000012566/1-385 ---------- ---------- ---------- ---------- ---------- bmy_07832T0/1-977 LQQAGLPETQ DRTQVPRT-- -----GCPGA EVTLCILGSP STFLSLLLEG BACU003535/1-786 LQQAGLPETQ DRTQVPRT-- ---------- ---------- ---------- 151 200 ENSP00000389009/1-950 GVQSPGNMLL CLSPAWLMKV PAPGQPGEAA LLVSKAVSFH PGGLTFLDDF ENSBTAP00000023529/1-963 GVQSPGNMLL CLSPAWLTKV PAPGQPGEAA LLVSKAVSFH PGGLTFLDDF ENSTTRP00000012566/1-385 ---------- ---------- ---------- ---------- ---------- bmy_07832T0/1-977 GVQSPGNMLL CLSPAWLTKV PAPGQSGEAA LLVSKAVSFH PGGLTFLDDF BACU003535/1-786 -----GNMLL CLSPAWLTKV PAPGQPGEAA LLVSKAVSFH PGGLTFLDDF 201 250 ENSP00000389009/1-950 VPPRRATYFL AGLGLGPGRG REAAELARDL TCPTGASAEL ARLLEDRLLT ENSBTAP00000023529/1-963 VPPRRATYFL AGLGLGPGWG REAAELARDL TCPTGASAEL ARLLEDRLLT ENSTTRP00000012566/1-385 ---------- ---------- ---------- ---------- ---------- bmy_07832T0/1-977 VPPRRATYFL AGLGLGPGRG REAAELARDL TCPTGASAEL ARLLEDRLLT BACU003535/1-786 VPPRRATYFL AGLGLGPGRG REAAELARDL TCPTGASAEL ARLLEDRLLT 251 300 ENSP00000389009/1-950 RQLLAQQGGV AVPATLAFTY KPPGLLRGGD ASLGLRLVEL SGKEGQETLV ENSBTAP00000023529/1-963 RRLLAQQGNV AVPATLAFTY KPPAPLRGGD ASPGLRLVEL NGKEGQETLV ENSTTRP00000012566/1-385 ---------- ---------- ---------- ---------- ---------- bmy_07832T0/1-977 RRLLAQQGDV AVPATLAFTY KPPALLRGGD ASPGLRLVEL NGKEGQETLV BACU003535/1-786 RRLLAQQGDV VVPATLAFTY KPPALLRGGD ASPGLRLVEL NGKEGQETLV 301 350 ENSP00000389009/1-950 KEEVEAFLRS EALGDILQVA VKLSGWRWRG RQAWRLHPRA ELGAVVDTVL ENSBTAP00000023529/1-963 KEEVGAFLHS EALGDALQVA VKLSGWRWRG RQALRLYPRA EQGPVVDTVL ENSTTRP00000012566/1-385 ---------- ---------- ---------- ---------- ---------- bmy_07832T0/1-977 KEEVGAFLHS EALGDALQVA MKLSGWRWRG RQAMRLYPRA ELGPVVDTVL BACU003535/1-786 KEEVGAFLHS EALGDALQVA VKLSGWRWRG RQAMRLYPRA ELGPVVDTVL 351 400 ENSP00000389009/1-950 ALLEKLEEEE SVLVEAVYPP AQLPCSDG-- ---PSPGPGL AVRICAVVCR ENSBTAP00000023529/1-963 ALLEKLEEEE SVLVEAVCPP ARLPFAGEGR LGQPRVELGS ASRLLCAQAS ENSTTRP00000012566/1-385 ---------- ---------- ---------- ---------- ---------- bmy_07832T0/1-977 ALLEKLEEEE SVLVEAVCPP VRLPFPGS-- ---PPPGPEL ALRICAVVCR BACU003535/1-786 ALLEKLEEEE SVLVEAVCPP ARLPFPGS-- ---PPPGPEL ALRICAVVCR 401 450 ENSP00000389009/1-950 TQGDRPLLSK VVCGVGRGDR PLRHHNSLPR TLEVALAQCG LGEEAQVAAV ENSBTAP00000023529/1-963 PWRESPQGDQ VVCSVGRGDR PLRHQSSLPR TLEAALAQCG LAEASQVAIV ENSTTRP00000012566/1-385 ---------- ---------- ---------- ---------- ---------- bmy_07832T0/1-977 TQGDRPLLSK VVCSVGRGDR PLRHQSSLPR TLEAALAQCG LGEASQVAVV BACU003535/1-786 TQGDRPLLSK VVCSVGRGDR PLRHQSSLPR TLEAALAQCG LGEASQ---- 451 500 ENSP00000389009/1-950 RQRVKAAAEA ALAAVLALEA GLSAEQRGGR RAHTDFLGVD FALTAAGGVL ENSBTAP00000023529/1-963 RQRVKAAAEA ALAAVLTLEA GLSAEQRGGR QVRTDFLGVD FALTVAGRAL ENSTTRP00000012566/1-385 ---------- ---------- ---------- ---------- ---------- bmy_07832T0/1-977 RQRVKAAAEA ALAAVLTLEA GLSAEQRGGR QVRTDFLGVD FALSVAGRAL BACU003535/1-786 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000389009/1-950 TPVALELNGG LCLEACGALE GLWAAPRLGP AADEAVAAPL VETMLRRSAR ENSBTAP00000023529/1-963 TPVALELNGG LCLEACGALE GLWAAQRPGL AAEEAAAAPL VETMLRRSAR ENSTTRP00000012566/1-385 ---------- ---------- ---------- ---------- ---------- bmy_07832T0/1-977 TPVALELNGG LCLEACGALE GLWAAPRPGL AAEEAAAAPL VETMLRRSAR BACU003535/1-786 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000389009/1-950 CLMEGKQLLV VGAGGVSKKF VWEAARDYGL QLHLVESDPN HFASQLVQTF ENSBTAP00000023529/1-963 CLMEGKQLLL LGAGGVSKKF VWEAARDYGL KLHLVESDPN HFASQLVQTF ENSTTRP00000012566/1-385 ---------- ---------- ---------- ---------- ---------- bmy_07832T0/1-977 CLMEGKQLLV LGAGGFSKKF VWEAARDYGL KLHLVESDPN HFASQLVQTF BACU003535/1-786 ---------- ---------- ---------- -LHLVESDPN HFASQLVQTF 601 650 ENSP00000389009/1-950 IHFDMTEHRR DEENARLLAE LVRARGLKLD GCFSYWDDCL VLTALLCQEL ENSBTAP00000023529/1-963 IHFDVTEHRR DEENARVLAE LVRARGLQLD GCFSYWDDCL VLTALLCQEL ENSTTRP00000012566/1-385 ----ITEHQR DEENARVLAE LVRARGLQLD GCFSYWDDCL VLTALLCQEL bmy_07832T0/1-977 IHFDLTEHQR DEENARVLAE LVRARGLQLD GCFCYWDDCL VLTAFLCQEL BACU003535/1-786 IHFDITEHRR DEENARVLAE LVRARGLQLD GCFSYWDDCL VLTALLCQEL 651 700 ENSP00000389009/1-950 GLPCSSPAAM RLAKQKSLTQ LHLLHHHGPP WPAPSLHAVP CCPLESEADV ENSBTAP00000023529/1-963 GLPCNPPAAM RLAKQKSRTQ LHLLCRRGPP WPAPSLYAVP CCPLESEADV ENSTTRP00000012566/1-385 GLPCNPPAAM HVAKQKSRTQ LHLLCHHGPP WPAPSLYAVP CCPLESEADV bmy_07832T0/1-977 GLPSNPPAAM HLAKQKSHTQ LHLLCRHGPP WPAPSLYAVP CCPLESEADV BACU003535/1-786 GLPCNPPAAM HLAKQKSHTQ LHLLCRHGPP WPAPSLYAVP CCPLESEADV 701 750 ENSP00000389009/1-950 ERAVHQVPLP GVMKLEFGAG AVGVRLVEDA PQCHEHFSRI TRDLQGEADH ENSBTAP00000023529/1-963 DRAVCQVPLP GVMKLEFGAG AVGVRLVKNA SQCREHFSRI ARDLQAEADH ENSTTRP00000012566/1-385 DRAVRQVPLP GVMKLEFGAG AVGVRLVEDA SQCHEHFSRI ARDLQVEADY bmy_07832T0/1-977 DSAVRQVPLP GVMKLEFGAG AVGVRLVEDA SQCHEHFSRI ARDLQGEADH BACU003535/1-786 DSAVRQVPLP GVMKLEFGAG AVGVRLVEDA SQCHEHFSRI TRDLQGEADR 751 800 ENSP00000389009/1-950 PGIGLGWGNA MLLMEFVEGT EHDVDLVLFG GRLLAAFVSD NGPTRLPGFT ENSBTAP00000023529/1-963 PGIGLGWGNA MLLMEFIEGT EHDVDLVLFG GRLLAAFVSD NGPTRLPGFT ENSTTRP00000012566/1-385 PGIGLGWGNA MLLMEFIEGT EHDVDLVLFG GRLLAAFVSD NGPTRLPGFT bmy_07832T0/1-977 PGIGLGWGNA MLLMEFIEGT EHDVDVVLFG GRLLAAFVSD NGPTRLPGFT BACU003535/1-786 PGIGLGWGNA MLLMEFIEGT EHDVDLVLFG GRLLAAFVSD NGPTRLPGFT 801 850 ENSP00000389009/1-950 ETAACMPTGL APEQEAQMVQ AAFRCCLGCG LLDGVFNVEL KLTGAGPRLI ENSBTAP00000023529/1-963 ETAACMPTGL APEQEAQLVQ AAFRCCLGCG LLDGVFNVEL KLTGAGPRLI ENSTTRP00000012566/1-385 ETAACMPTGL APEQEAQLVQ AAFRCCLGCG LLDGVFNVEL KLTRAGPRLI bmy_07832T0/1-977 ETAACMPTGL APEQEAQLVQ AAFRCCLGCG LLDGVFNVEL KLTRAGPRLI BACU003535/1-786 ETAACMPTGL APEQEAQLVQ AAFRCCLGCG LLDGVFNVEL KLTRAGPRLI 851 900 ENSP00000389009/1-950 EINPRMGGFY LRDWILELYG VDLLLAAVMV ACGLRPALPT RPRARGHLVG ENSBTAP00000023529/1-963 EINPRMGGFY LRDWILELYG VDLLLAAAMV ACGLRPALPA HPRARGHLVG ENSTTRP00000012566/1-385 EINPRMGGFY LRDWILELYG VDLLLAAAMV ACGLRPALPA HPRARGHLVG bmy_07832T0/1-977 EINPRMGGFY LRDWIQELYG VDLLLAAVMV ACGLRPALPA HPRARGHLVG BACU003535/1-786 EINPRMGGFY LRDWIQELYG VDLLLAAAMV ACGLRPALPA HPRARGHLVG 901 950 ENSP00000389009/1-950 VMCLVSQHLQ ALSSTASRET LQALHDRGLL RLNLLEEALV PGEYEEPYCS ENSBTAP00000023529/1-963 VMCLVSQHLQ ALSSTASPET LQALHDQGLL RLNLLEEALV PGEYEEPYCS ENSTTRP00000012566/1-385 VMCLVSQHLQ ALSSTASRET LQALHDQGLL RLNLLEETLV PGEYEEPYCS bmy_07832T0/1-977 VMCLVSQHLQ ALSSTASRET LQALHDQGLL RLNLLEEALV PGEYEEPYCS BACU003535/1-786 VMCLVSQHLQ ALSSTASRET LQALHDQGLL RLNLLEEALV PGEYEEPYCS 951 1000 ENSP00000389009/1-950 VACAGPSPTE ARLRLLGLCQ GLGIDGPSYP VAHFLSHFK ENSBTAP00000023529/1-963 VACAGSSPAE ARHRLLGLCQ GLGIDGPHYP VAYFLSHFK ENSTTRP00000012566/1-385 VACAGPSPAE ARLRLLGLCQ GLGIDGPHYP VAYFLSHFK bmy_07832T0/1-977 VACAGPSPAE ARLRLLGLCQ GLGIDGPHYP VAYFLSHFK BACU003535/1-786 VACAGPSPTE ARLRLLGLCQ GLGIDGPHYP VAYFLSHFK