KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:57 2014 Check: 00 .. Name: ENSP00000355249/1-437 Len: 438 Check: 4114 Weight: 1.00 Name: ENSBTAP00000023554/1-365 Len: 438 Check: 3002 Weight: 1.00 Name: ENSTTRP00000015269/1-433 Len: 438 Check: 9666 Weight: 1.00 Name: bmy_04544T0/1-394 Len: 438 Check: 692 Weight: 1.00 Name: BACU005770/1-355 Len: 438 Check: 3121 Weight: 1.00 // 1 50 ENSP00000355249/1-437 MLQGPRALAS AAGQTPKVVP AMSPTELWPS GLSSPQLCPA TATYYTPLYP ENSBTAP00000023554/1-365 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015269/1-433 -MLLSRALAS AAGHT-KGLH ARSPTELVPS --SRLRLLTA TTTYYTQLYP bmy_04544T0/1-394 MLRGPRALAP AAGPPPKGLP TMSPTELWPP GLSSPQLCPA TTTYYTQLYP BACU005770/1-355 ---------- ---------- -MSPTELWPP GLSSPQLCPA TTTYYTQLYP 51 100 ENSP00000355249/1-437 QTAPPAAAPG TCLDATPHGP EGQVVRCLPA GRLP-AKRKL DLEGIGRPVV ENSBTAP00000023554/1-365 ---------- ---------- -GDVCTSSPC GHLPGAKRKL DLEGIGRPTV ENSTTRP00000015269/1-433 QTVPPAAAPG TCLDATPHGP EGQAVRCVPA GRLP-AKRKL DLEGIGKPVV bmy_04544T0/1-394 QTVPPAAAPG TCLDATPHGP EGQAVRCVPA GRLP-AKRKL DLEGIGRPVV BACU005770/1-355 QTVPPAAAPG TCLDATPHGP EGQAVRCVPA GRLP-AKRKL DLEGIGRPVV 101 150 ENSP00000355249/1-437 PEFPTPKGKC IRVDGLPSPK TPKSPGEKTR YDTSLGLLTK KFIYLLSESE ENSBTAP00000023554/1-365 PEFRTPKGKC IRVDGLPSPK TPKSPGEKTR YDTSLGLLTK KFIYLLSESE ENSTTRP00000015269/1-433 PEFRTPKRKC IRVDGLPSPK TPKSPGEKTR YDTSLGLLTK KFIYLLSESE bmy_04544T0/1-394 PEFRTPKRKC IRVDGLPSPK TPKSPGEKTR YDTSLGLLTK KFIYLLSESE BACU005770/1-355 PEFWTPKRKC IRVDGLPSPK TPKSPGEKTR YDTSLGLLTK KFIYLLSESE 151 200 ENSP00000355249/1-437 DGVLDLNWAA EVLDVQKRRI YDITNVLEGI QLIRKKAKNN IQWVGRGMFE ENSBTAP00000023554/1-365 DGVLDLNWAA EVLDVQKRRI YDITNVLEGI QLIRKKAKNN IQWVGRGLFE ENSTTRP00000015269/1-433 DGVLDLNWAA EVLDVQKRRI YDITNVLEGI QLIRKKAKNN IQWVGRGLFE bmy_04544T0/1-394 DGVLDLNWAA EVLDVQKRRI YDITNVLEGI QLIRKKAKNN IQWTVTSL-- BACU005770/1-355 DGVLDLNWAA EVLDVQKRRI YDITNVLEGI QLIRKKAKNN IQW------- 201 250 ENSP00000355249/1-437 DPTRPGKQQQ LGQELKELMN TEQALDQLIQ SCSLSFKHLT EDKANKRLAY ENSBTAP00000023554/1-365 DPTRPGKQQQ LGQELKELMN MEQALDQLIH SCSLNFKHLT EDKANKRLAY ENSTTRP00000015269/1-433 DPTRPGKQQQ LGQELKELMS MEQALDQLIQ SCSLHFKHLT EDKANKRLAY bmy_04544T0/1-394 ---------- ---------- ---------- ---------- -DSPAPTLAY BACU005770/1-355 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000355249/1-437 VTYQDIRAVG NFKEQTVIAV KAPPQTRLEV PDRTEDNLQI YLKSTQGPIE ENSBTAP00000023554/1-365 VTYQDIRAVG NFKEQTVIAV KAPPQTRLEV PDRSEENLQI HLKSTQGPIE ENSTTRP00000015269/1-433 VTYQDIRAVG SFKEQTVIAV KAPPQTRLEV PDRSEENLQI YLKSTQGPIE bmy_04544T0/1-394 VTYQDIRAVG NFKEQTVIAV KAPPQTRLEV PDRSEENLQI YLKSTQGPIE BACU005770/1-355 ----DIRAVG NFKEQTVIAV KAPPQTRLEV PDRSEENLQI YLKSTQGPIE 301 350 ENSP00000355249/1-437 VYLCPEEVQE PDSPSEEPLP STSTLCPSPD SAQPSSSTDP SIMEPTASSV ENSBTAP00000023554/1-365 VYLCPEEVQE PHSPAKEPLP STSALSPSPD STQLNSNSDP GITEPTASSV ENSTTRP00000015269/1-433 VYLCPEEVQE PNSPAKEPLP STSALSPSPG PTQPSSSINP GITESTASSA bmy_04544T0/1-394 VYLCPEEVQE PNSPAKEPLP STSALSPSPD PTQPSSSINP GITESTASSA BACU005770/1-355 VYLCPEEVQE PNSPAKEPLP STSALSPSPD PTQPSSSINP GITESTASSA 351 400 ENSP00000355249/1-437 PAPAPTPQQA PPPPSLVPLE ATDSLLELPH PLLQQTEDQF LSPTLACSSP ENSBTAP00000023554/1-365 --LEPPGVPP PPPPPLVPLE ATENMLELPH PLLQQTEDQF LSPTLPCSSP ENSTTRP00000015269/1-433 PALTSQQVLP PLPPSLVPLE ATDSMLELPH PLLQQTEDQF LSPTLPCSSP bmy_04544T0/1-394 PALTSQQVLP PLPPSLVPLE ATDSMLEPPH PLLQQTEDQL LSPTLPCGSP BACU005770/1-355 PVLTSQQVLP PLPPSLVPLE ATDSMLEPSH PLLQQTEDQL LSPTPPCGSP 401 450 ENSP00000355249/1-437 LISFSPSLDQ DDYLWGLEAG EGISDLFDSY DLGDLLIN ENSBTAP00000023554/1-365 LISFSPPLDQ DDYLWGLDGG EGISDLFDTY DLGDLLIN ENSTTRP00000015269/1-433 LISFSPPLDQ DDYLWGLDGG EGISDLFDTY DLGDLLIN bmy_04544T0/1-394 LISFSPPLDQ DDYLWGLDGG EGISDLFDTY DLGDLLIN BACU005770/1-355 LISFSPPLDQ DDYLWGLDGG EGISDLFDTY DLGDLLIN