KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:57 2014 Check: 00 .. Name: ENSP00000286760/1-809 Len: 848 Check: 1798 Weight: 1.00 Name: ENSBTAP00000023556/1-803 Len: 848 Check: 8472 Weight: 1.00 Name: BACU016049/1-566 Len: 848 Check: 1591 Weight: 1.00 Name: ENSTTRP00000000535/1-821 Len: 848 Check: 6536 Weight: 1.00 Name: bmy_18685T0/1-762 Len: 848 Check: 9276 Weight: 1.00 // 1 50 ENSP00000286760/1-809 ---------- ---------- -MEDEQPDSL EGWVPVREGL FAEPERHRLR ENSBTAP00000023556/1-803 ---------- ---------- -MEDEQPDSL EGWVPVREDL FAEPERHQLR BACU016049/1-566 ---------- ---------- -MEDEQPDSL EGWVPVREDL FADPERHQLR ENSTTRP00000000535/1-821 LGVQGDQAPA SRALRALPPA VMEDEQPDSL EGWVPVREDL FAEPERHQLR bmy_18685T0/1-762 ---------- ---------- -MEDEQPDSL EGWVPVREDL FADPERHQLR 51 100 ENSP00000286760/1-809 FLVAWNGAEG KFAVTCHDRT AQQRRLREGA RLGPEPEPKP --EAAVSPSS ENSBTAP00000023556/1-803 FLVAWNDVEG KFAVTCHDRT AQRRRWREGS QAGPEPAPEP --EAAAPPPS BACU016049/1-566 FLVAWNDVEG KFAVTCHDRT AQRRR-REGS QPGPELVSEP ---------- ENSTTRP00000000535/1-821 FLVAWNDVEG KFAVTCHDRT AQRRR-RKGS QPGPELVSEP VSEAAAPPPS bmy_18685T0/1-762 FLVAWNDVEG KFAVTCHDRT AQRRR-REGS QPGPELVSEP VSEAAAPPPS 101 150 ENSP00000286760/1-809 WAGLLSAAGL RGAHRQLAAL WPPLERCFPR LPPELDVGGG GAWGLGLGLW ENSBTAP00000023556/1-803 WAGLLSAAGL RGAHRQLAAL WPPLEPCFPR LPPELDVGGG GAWGLGLGLW BACU016049/1-566 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000535/1-821 WAGLLSAAGL RGAHQQLAAL WPPLERCFPR LPPELDAGGG GAWGLGLGLW bmy_18685T0/1-762 WAGLLSAAGL RGAHQQLAAL WPPLDRCFPR LPPELDAGGG GAWGLGLGLW 151 200 ENSP00000286760/1-809 ALLWPTRAGP GEAALQELCG QLERYLGAAA DGCGGATVRD ALFPAEGGAA ENSBTAP00000023556/1-803 TLVWPAPTGP GEAALQELCR QLERYLGQAA DGCGGAAVRD ALFPGQRCAA BACU016049/1-566 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000535/1-821 TLVWPARTDL GEAALQELCG QLERYLGQAA DACGGAAVRD ALFPAEGCAA bmy_18685T0/1-762 TLVWPARTEP GEAALQELCG QLERYLGQAA DGCGGAAVRD ALFPAEGCAA 201 250 ENSP00000286760/1-809 DCESPREFRE RALRARWVEA DARLRQVIQG HGKANTMVAL MNVYQEEDEA ENSBTAP00000023556/1-803 DCESTREFRE RALRARRDEA SARLRQLLQG HEKANTMVAL MNVYREEDEA BACU016049/1-566 ---------- ---------- ------VLQG HEKANTMVAL MKVYREEDEA ENSTTRP00000000535/1-821 DCESLREFRE RVLRARRDEA GARLRQVLQG HEKANTMVAL MKVYREEDEA bmy_18685T0/1-762 DCESPREFRE RALRARRDEA GARLRQVLQG HEKANTMVAL MKVYREEDEA 251 300 ENSP00000286760/1-809 YQELVTVATM FFQYLLQPFR AMREVATLCK LDILKSLDED DLGPRRVVAL ENSBTAP00000023556/1-803 YQELVTATTM FFQYLLQPFR DMRELATSCK LAILKSLDED DLGPKRIVAL BACU016049/1-566 YQELVTAATL FFQYLLQPFR DMRELATSCK LAILKSLDED GLGPKRIVAL ENSTTRP00000000535/1-821 YQELVTAATI -FQYLLQPFR DMRELATSCK LAILKSLDED GLGPKRIVAL bmy_18685T0/1-762 YQELVTAATL FFQYLLQPFR DMRELATSCK LAIL------ ---------- 301 350 ENSP00000286760/1-809 EKEAEEWTRR AEEAVVSIQD ITVNYFKETV KALAGMQKEM EQDAKRFGQA ENSBTAP00000023556/1-803 QKEAQEWTRQ AEEAIVSIQD ITVNYFEKTV EALAGMKKQM AQDEKRFGQA BACU016049/1-566 QKEAQEWTRR AEEAIVSIQD ITVNYF---- ---GKTVEAL A--------- ENSTTRP00000000535/1-821 QKEAQEWTRR AEEAIVSIQD ITVNYF---- ---EKMQKQM AQDEKRFGQA bmy_18685T0/1-762 ---------- ---------- ---GCF---- ---AGMQKQM AQDEKRFGQA 351 400 ENSP00000286760/1-809 AWATAIPRLE KLQLMLARET LQLMRAKELC LNHKRAEIQG KMEDLPEQEK ENSBTAP00000023556/1-803 AWATATPRLE KLKLMLAREA LQLMRAKELC LNHRRAEIRG KMEDLPEQEK BACU016049/1-566 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000535/1-821 AWATATPRLE KLKLMLARET LQLMRAKELC FSHKRAEIQG KIEDLPEQEK bmy_18685T0/1-762 AWATATPRLE KLKLMLARET LQLMRAKELC LNHKRAEIQG KMEDLPEQEK 401 450 ENSP00000286760/1-809 NTNVVDELEI QFYEIQLELY EVKFEILKNE EILLTTQLDS LKRLIKEKQD ENSBTAP00000023556/1-803 KINIVDDLEI QYYEVQLELY EVKFEILKYE EILLVTQLDS IKRLIKDKQD BACU016049/1-566 ---------- ---------- ---------- ---------- ------DKQD ENSTTRP00000000535/1-821 KINVVDELEI QYYEVQLELY EVKFEILKYE EILLVTQLDS IKRLIKDKQD bmy_18685T0/1-762 KINVVDELEI QYYEVQLELY EVKFEILKYE EILLVTQLDS IKRLIKDKQD 451 500 ENSP00000286760/1-809 EVVYYDPCEN PEELKVIDCV VGLQDDKNLE VKELRRQCQQ LESKRGRICA ENSBTAP00000023556/1-803 EVIYYDPCES PEELTVMDGV MGLQEGKQLE VGVLSRQCQQ LESKRGSICA BACU016049/1-566 EVIYYDPCEN PEELKVMDRV MGLQDDKNLE VKELSRQCQQ LESKRGRICA ENSTTRP00000000535/1-821 EVIYYDPCEN PEELKVMDHV MGLQDDKNLE VKELSRQCQQ LESKRGMICA bmy_18685T0/1-762 EVIYYDPCEN PEELKVMDRV MGLQDDKNLE VKELSRQCQQ LESKRGRICA 501 550 ENSP00000286760/1-809 KRASLRSRKD QCKENHRFRL QQAEESIRYS RQHHSIQMKR DKIKEEEQKK ENSBTAP00000023556/1-803 RRARLRNRKD QCKENHRLRL QQAEERIKYS HQHHSVQRKR DKKKEEEQKK BACU016049/1-566 RRARLRNRKD HCKENHRLRL QQAEESIKYL HQHHSVQRKR DQKKEEEQKK ENSTTRP00000000535/1-821 RRARLTNRKD QCKENHRLRL QQAEESIKYF HQHHSVQRKR DQKKEEEQKK bmy_18685T0/1-762 RRARLRNRKD HCKENHRLRL QQAEESIKYL HQHHSVQRKR DQKKEEEQKK 551 600 ENSP00000286760/1-809 KEWINQERQK TLQRLRSFKD KRLAQSVRNT SGSEPVAPNL PSDLSQQMCL ENSBTAP00000023556/1-803 REWINQERQK TLQRLRAFKE RCPGQPVLKS SRSQPVTPDL PNGLPKQTPP BACU016049/1-566 KEWINQERQK TLQRLRAFKE RCPSRSVLKS SRSQPVAPHR PSGLPRQTSP ENSTTRP00000000535/1-821 KEWINQERQK TLQRLRAFKE RCPGRSVLKS SRSHPAAAHL PSGPPRQTSP bmy_18685T0/1-762 KEWINQERQK TLQRLRAFKE RRPGRSVLKS SRSQPVAPHL PSGLPRQTSP 601 650 ENSP00000286760/1-809 PASHAVSVIH PSSRKTRGVP LSEAGNVKSP KCQNCHGNIP VQVFVPVGDQ ENSBTAP00000023556/1-803 PTSQMTAVIH PSSRKTRSAP LSEVSTVKTP EREDCAGDSP VPTLVPLVTK BACU016049/1-566 PTSQMTAVIH PSSRKTRSAP LSEVSNVITP EHEDCARNIP VQTFVPVGAQ ENSTTRP00000000535/1-821 PTSQMTAVIH PSSRKTRSAP LAEVSNVRTP EHEDCARNIP VQTFVPVGAH bmy_18685T0/1-762 PTSQMTAVIH PSSRKTRSAP LSEVSNVITP EHEDCARNIP VQTFAPVGAQ 651 700 ENSP00000286760/1-809 T------HSK SSEELSLPPP PPPPPPPPPP PPPPPP---- ---PLRALSS ENSBTAP00000023556/1-803 HIPRQVRNCC RRRRLCLPAT SSPPPP---- ---------- ---PLPAQPF BACU016049/1-566 T------HSK SSEELPLPPP PPPPPPPPPP PPPPPPPPPP PPLPLPAPPF ENSTTRP00000000535/1-821 T------HCR SSEELSLPPP PPPPPPPPPP PPPPPPPP-- ---PLPAPPF bmy_18685T0/1-762 T------HSK SSEELPLPPP PP-PPPPPPP PPPPPPPL-- ---PLPAPPF 701 750 ENSP00000286760/1-809 SSQAATHQNL GFRAPVKDDQ PRPLVCESPA ERPRDSLESF SCPGSMDEVL ENSBTAP00000023556/1-803 SSQPANHRNL RFGTSVKDDQ PLPLVCESPT ENPRGPADSF SGPGSMDEVL BACU016049/1-566 SSQSANHRNL HFRTSAKDDQ PHPLVCESPA ESPCGSSDSF TCPGSMDEVL ENSTTRP00000000535/1-821 SSQSANHRNL HFRTSAKDDQ PLPLVCESPA ESPCGSSDSL SCPGSMDEVL bmy_18685T0/1-762 SSQSTNHRNL HFRTSAKDDQ PHPLVCESPA ESPCGSSDSF SCPGSMDEVL 751 800 ENSP00000286760/1-809 ASLRHGRAPL RKVEVPAVRP PHASINEHIL AAIRQGVKLK KVHPDLGPNP ENSBTAP00000023556/1-803 ASLRHGRAPP QKVQAPALPP PRASVNEHIL AAIRQGVKLK KVHPAPGPSP BACU016049/1-566 ASLRHDRAPL QKVQAPTLSP PRASVNEHIL AAIRQGVKLK KVHPDLGPSP ENSTTRP00000000535/1-821 ASLRHDRAPL QKAQAHTLSP PRASVNEHIL AAIRQGVKLK KVHPDLGPSP bmy_18685T0/1-762 ASLRHDRAPL QKVQAPTLSP PRASVNEHIL AAIRQGVKLK KVHPDLGPSP 801 850 ENSP00000286760/1-809 SSKPTSNRRT SDLERSIKAA LQRIKRVSAD SE---EDSDE QDPGQWDG ENSBTAP00000023556/1-803 SSKP-----T SDLEKSIKAA LQRIKRVSAD SEEEGEEGDE QGPHEWDH BACU016049/1-566 SNKP-----T SDLERSIKAA LQRIKRVSAD SEEE-DDRDE QNPGEWDR ENSTTRP00000000535/1-821 SNKP-----T SDLERSIKAA LQRIKRVSAD SEE--DDRDE QNPGEWDR bmy_18685T0/1-762 SNKP-----T SDLERSIKAA LQRIKRVSAD SEEE-DDRDE QNPGEWDR