KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:58 2014 Check: 00 .. Name: BACU007683/1-554 Len: 808 Check: 4912 Weight: 1.00 Name: ENSP00000411124/1-593 Len: 808 Check: 3407 Weight: 1.00 Name: ENSBTAP00000023562/1-632 Len: 808 Check: 4232 Weight: 1.00 Name: bmy_02534T0/1-686 Len: 808 Check: 2273 Weight: 1.00 Name: ENSTTRP00000015140/1-596 Len: 808 Check: 9847 Weight: 1.00 // 1 50 BACU007683/1-554 ---MFSGAGS QARGSDPGSR RQDGHGSLVE PRAEAPRKEV CREDLQSCKL ENSP00000411124/1-593 ---------- -MEKL----- ---------- ---------- ---------- ENSBTAP00000023562/1-632 ---------- -MEKL----- ---------- ---------- ---------- bmy_02534T0/1-686 MAGPAWPPGP RSEQLCPLHP QAAQPLGALV PRATPRPAGP TGQVLALALG ENSTTRP00000015140/1-596 ---------- -MEKL----- ---------- ---------- ---------- 51 100 BACU007683/1-554 SPTSGQNPKG PPSHPSWVKQ PGQEETKASP GLLSIPEPLG TGSRAATGPL ENSP00000411124/1-593 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023562/1-632 ---------- ---------- ---------- ---------- ------RLRS bmy_02534T0/1-686 QGPLSCPKHS PPPVPDWLRV RDPDPRGGGG AV-------- -CVRVVRVRV ENSTTRP00000015140/1-596 ---------- ---------- ---------- ---------- ---------- 101 150 BACU007683/1-554 AWLSRRQEAR LPFSRFLDEV AVRVLDPGTL EAFRGSRGRS PEPSPGEQDP ENSP00000411124/1-593 ---------- ---------- ---------- ---------- ---------S ENSBTAP00000023562/1-632 AWV------- ---------- ------PSCL GQSRNLQGRR ARSSPSLWDS bmy_02534T0/1-686 RWCGRAHPVR ---------- ---------- THRRLELSAA ARPAAACRCS ENSTTRP00000015140/1-596 ---------- ---------- ---------- ---------- ---------S 151 200 BACU007683/1-554 GLAQEPLAGA SAPEKTLALS PQLSSEVAPE AASRGGPGRA TETSVPRMGS ENSP00000411124/1-593 ALQEQ----- ---------- ---------- ---KGELRKR LSYTTHKLEK ENSBTAP00000023562/1-632 SLQEQ----- ---------- ---------- ---KGELRKR LSYTTHRLEK bmy_02534T0/1-686 ALQEQ----- ---------- ---------- ---KGELRKR LSYTTHKLEK ENSTTRP00000015140/1-596 ALQEQ----- ---------- ---------- ---KGELRKR LSYTTHKLEK 201 250 BACU007683/1-554 SKRGGPATSP QRPPSPKRVR EQDKEETKEA GAQSRSKEGP GDPSQALREG ENSP00000411124/1-593 LETEFDSTRH YLEIELRRAQ EELEKVTE-- ---------- ---------- ENSBTAP00000023562/1-632 LENEFDSTRH FLEIELRRAQ EELEKVTE-- ---------- ---------- bmy_02534T0/1-686 LETEFDSTRH YLEIELRRAQ EELEKVTE-- ---------- ---------- ENSTTRP00000015140/1-596 LETEFDSTRH YLEIELRRAQ EELEKVTE-- ---------- ---------- 251 300 BACU007683/1-554 RDSPRVTGIQ SNYMALQRIN QELEDKLYRM GQHYEEEKRA LSHEIVALNS ENSP00000411124/1-593 ----KLRRIQ SNYMALQRIN QELEDKLYRM GQHYEEEKRA LSHEIVALNS ENSBTAP00000023562/1-632 ----KLRRIQ SNYMALQRIN QELEDKLFRM GQHYEEEKRA LSHEIVALNS bmy_02534T0/1-686 ----KLRRIQ SNYMALQRIN QELEDKLYRM GQHYEEEKRA LSHEIVALNS ENSTTRP00000015140/1-596 ----KLRRIQ SNYMALQRIN QELEDKLYRM GQHYEEEKRA LSHEIVALNS 301 350 BACU007683/1-554 HLLEAKVTID KLSEDNELYR KDCNLAAQLL QCSQTYGRSH KVSELPSEFQ ENSP00000411124/1-593 HLLEAKVTID KLSEDNELYR KDCNLAAQLL QCSQTYGRVH KVSELPSDFQ ENSBTAP00000023562/1-632 HLLEAKVTID KLSEDNELYR KDCSLAAQLL QCSQTYGRGR KMAELPAEFQ bmy_02534T0/1-686 HLLEAKVTID KLSEDNELYR KDCNLAAQLL QCSQTYGRGH KVSELPSEFQ ENSTTRP00000015140/1-596 HLLEAKVTID KLSEDNELYR KDCNLAAQLL QCSQTYGRGH KVSELPSEFQ 351 400 BACU007683/1-554 EHVSLHVEKQ GCSLPSPLCR PAYADSVPPC VLAKVLEKPD PGSLSSHLSD ENSP00000411124/1-593 ERVSLHMEKH GCSLPSPLCH PAYADSVPTC VIAKVLEKPD PASLSSRLSD ENSBTAP00000023562/1-632 ERMNLHAEKP GCSLPAPLCR PAYADSVPPC VLAKVLEKPD PGSLSSHLSE bmy_02534T0/1-686 EHVSLHMEKQ GCSLPSPLCR PAYADSVPPC VLAKVLEKPD PGSLSSHLSD ENSTTRP00000015140/1-596 EHVSLHMEKQ GCSLPSPLCR PAYADSVPPC VLAKVLEKPD PGSLSSHLSD 401 450 BACU007683/1-554 ASARDLAFRD RLEKPGPRPP YKGDIYCSDT ALYCPEERRR DRRPSVDGPV ENSP00000411124/1-593 ASARDLAFCD GVEKPGPRPP YKGDIYCSDT ALYCPEERRR DRRPSVDAPV ENSBTAP00000023562/1-632 ASAQDLGFPE GLEKPGSRPP YKGDIYCSDT ALYCPEERHR DRRPSVEGPG bmy_02534T0/1-686 ASARDLAFRD RLEKPGPRPP YKGDIYCSDT ALYCPEERRR DRRPSVDGPV ENSTTRP00000015140/1-596 ASARDLAFRD RLEKPGPRPP YKGDIYCSDT ALYCPEERRR DRRPSADGPV 451 500 BACU007683/1-554 TDVGFLRAQN STDSAAEEEE E-----AAAA AYPAGYRHEA FAGYAASLPT ENSP00000411124/1-593 TDVGFLRAQN STDSAAEEEE E-----AEAA AFPAGFQHEA FPSYAGSLPT ENSBTAP00000023562/1-632 SDVGFLQAQN STDSTAEEEE EEEDTEAGAA AYPASYRHEA FGGYAASLPT bmy_02534T0/1-686 TDVGFLRAQN STDSAAEEEE E-----AAAA AYPAGYRHEA FGGYAASLPT ENSTTRP00000015140/1-596 TDVGFLRAQN STDSAAEEEE ------PEAA AYPAGYRHGA FGGYAASLPT 501 550 BACU007683/1-554 ---------- ---------- ---------- ---------- ---------- ENSP00000411124/1-593 SSSYSSFSAT SEEKEHAQAS TLTASQQAIY LNSRDELFDR KPPATTYEGS ENSBTAP00000023562/1-632 SSSYSSFSAA SEEKEHAQAS TLTASQQAIY LNSRDELFGR KPPA-AYGSS bmy_02534T0/1-686 SSSYSSFSAT SEEKEHAQAN TLTASQQAIY LNSRDELFGR KPPA-AYGSS ENSTTRP00000015140/1-596 SSSYSSFSAA SEEKEHAQAS TLTASQQAIY LNSRDELFGR TPPA-AYGSS 551 600 BACU007683/1-554 ---------- ---------- ---------- ---------- ---------- ENSP00000411124/1-593 PRFAKATAAV AAPLEAEVAP GFGRTMSPYP AETFRFPASP GPQQALMPPN ENSBTAP00000023562/1-632 PRYAAAAAAV AAPLEAAVAP GFPRTVSPFP AEPFRFPLSP GPQPALMPPN bmy_02534T0/1-686 PRYASAAAAV AAPLEAEAAP GFARTVR--- ---------- ---------- ENSTTRP00000015140/1-596 PRYASAAAAV AAPLEAEAAP GFARTVSPYP AEPYRFPVSP GPQPALMPPN 601 650 BACU007683/1-554 ---------- ---------- ---------- ---------- ---------- ENSP00000411124/1-593 LWSLRAKPGT ARLPGEDMRG QWRPLSVEDI GAYSYP---- ----VSAAGR ENSBTAP00000023562/1-632 LWNLRAKPGS ARLVAGAGRG QWRPLSVDDI GAYPFP---- AAAAAPAPSL bmy_02534T0/1-686 --------GS ARLAAEDVRG QWRPLSVEDI GAYPFPAAAA AAAAAAAPGR ENSTTRP00000015140/1-596 LWNLRAKPGS ARLAAEDVRG QWRPLSVEDI GAYPFP---A AAAAAAAPGR 651 700 BACU007683/1-554 ---------- ---------- ---------- ---------- ---------- ENSP00000411124/1-593 ASPCSFSERY YGGAGGSPGK KADGRASPLY ASYKADSFSE GDDLSQGHLA ENSBTAP00000023562/1-632 ASPGGFNDRY Y-GARGSPGE NAEGRASPLY ASYKADSFSE GDDLSQGHLV bmy_02534T0/1-686 ASPSGFSDRY F-GAGGGPGE KAEGRASPLY ASYKADSFSE GDDLSQGHLA ENSTTRP00000015140/1-596 ASPGGFNDRY F-GAGGGPGE KAEGRASPLY ASYKADSFSE GDDLSQGHLA 701 750 BACU007683/1-554 ---------- ---------- ---------- ---------- ------PEPE ENSP00000411124/1-593 EPCFLRAGGD LSLSPGRSAD PLPGYAPSEG GDGDRLGVQL CGTASSPEPE ENSBTAP00000023562/1-632 EPRYLRAAGD LSLSPGRSAD PLPSYAASE- GDRERLGVQL LGASGSPEPE bmy_02534T0/1-686 EPRYLRAAGD LSLSPGRSAE PLPSYAASE- GERERLGVQL CGAGGSPEPE ENSTTRP00000015140/1-596 EPRYLRAAGD LSLSPGRSAE PLPSYAASE- GERERLGVQL CGAGGSPEPE 751 800 BACU007683/1-554 HSPRSSRDSL EPSSMEASPE MHPGARLSPQ PAFPRTGGSG LSRKDSLTKA ENSP00000411124/1-593 ---QGSRDSL EPSSMEASPE MHPAARLSPQ QAFPRTGGSG LSRKDSLTKA ENSBTAP00000023562/1-632 LSLRSSRDSL EPSSMEASPE MHPGARLSPQ PAFPRAGSSG LSRKDSLTKA bmy_02534T0/1-686 HSPRSSRDSL EPSSMEASPE MHPGARLSPQ PAFPRTGGSG LSRKDSLTKA ENSTTRP00000015140/1-596 HSPRSSRDSL EPSSMEASPE MHPGARLSPQ PAFPRTGGSG LSR-DSLTKA 801 850 BACU007683/1-554 QLYGTLLN ENSP00000411124/1-593 QLYGTLLN ENSBTAP00000023562/1-632 QLYGTLLN bmy_02534T0/1-686 QLYGTLLN ENSTTRP00000015140/1-596 QLYGTLLN