KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:21:01 2014 Check: 00 .. Name: ENSP00000367069/1-1243 Len: 1247 Check: 9093 Weight: 1.00 Name: ENSBTAP00000023578/1-1237 Len: 1247 Check: 4639 Weight: 1.00 Name: ENSTTRP00000003487/1-1237 Len: 1247 Check: 5352 Weight: 1.00 Name: bmy_20072T0/1-815 Len: 1247 Check: 4828 Weight: 1.00 Name: BACU013264/1-1211 Len: 1247 Check: 3296 Weight: 1.00 // 1 50 ENSP00000367069/1-1243 METRAAENTA IFMCKCCNLF SPNQSELLSH VSEKHMEEGV NVDEIIIPLR ENSBTAP00000023578/1-1237 LFLFLTENPA IFMCKCCNLF SPSQSELLSH VSEKHAEEGV NADEIIIPLR ENSTTRP00000003487/1-1237 -VTGSTENPA IFMCKCCNLF SPSQSELLSH VSEKHAEEGV NVDEIIIPLR bmy_20072T0/1-815 ---------- ---------- ---------- ---------- ---------- BACU013264/1-1211 ---------- --MCKCCNLF SPSQSELLSH VSEKHAEEGV NVDEIIIPLR 51 100 ENSP00000367069/1-1243 PLSTPEPPNS SKTGDEFLVM KRKRGRPKGS TKKSSTEEEL AENIVSPTED ENSBTAP00000023578/1-1237 PLSTPEPTNP GKPGDEFSVM KRKRGRPKGS TKKPSPEEEL AERSALPGVD ENSTTRP00000003487/1-1237 PLSTPEPTNP GKTGDXXXXX XXXXXXXXXX XXXXXXXXXX XENNVIPSGD bmy_20072T0/1-815 ---------- ---------- ---------- ---------- ---------- BACU013264/1-1211 PLSTPEPANP GKTGDEFSVM KRKRGRPKGS TKKASPEEEL AENNVIPSGD 101 150 ENSP00000367069/1-1243 SPLAPEEGNS LPPSSLECSK CCRKFSNTRQ LRKHICIIVL NLGEEEGEAG ENSBTAP00000023578/1-1237 GVRAPEEG-- ---SSLECSK CCRKFSNPRQ LRKHICIIVL NLGEAEGDAG ENSTTRP00000003487/1-1237 SPRAPEGGGS LTPSSLECSK CCRKFSNPRQ LRKHICIIVL DLGEEEGEAG bmy_20072T0/1-815 ---------- ---------- ---------- --MHLGICSL ---------G BACU013264/1-1211 SPRAPEGGDS LAPSSLECSK CCRKFSNPRQ LRKHICIIVL NLGEEEGEAG 151 200 ENSP00000367069/1-1243 NESDLELEKK CKEDDREKAS KRPRSQKTEK VQKI-SGKEA RQLSGAKKPI ENSBTAP00000023578/1-1237 NESDLELEKK YKEDDREKAP KRPRAQRAEK IQKVCSGKEA PQMSGAKKPI ENSTTRP00000003487/1-1237 NESDLELEKK YKEDDREKAP KRLRTQRVEK VQKVCSGKEA AQISGAKKPI bmy_20072T0/1-815 NESDLELEKK YKEDDREKAP KRLRTQRVEK VQKVCSGKEA AQISGAKKPI BACU013264/1-1211 NESDLELEKK YKEDDREKAP KRLRTQRVEK VQKVCSGKEA AQISGAKKPI 201 250 ENSP00000367069/1-1243 ISVVLTAHEA IPGATKIVPV EAGPPETGAT NSETTSADLV PRRGYQEYAI ENSBTAP00000023578/1-1237 ISVVLTAHEA IPGATKIVPV EAGPPETGAT DPEATAADLA PRRGYQEYAI ENSTTRP00000003487/1-1237 ISVVLTAHEV IPGATKIVPV EAGPPEAGAA DPEAAVADLA PRRGYQEYAI bmy_20072T0/1-815 ISVVLTAHEV IPGATKIVPV EAGPPETGAA DPEAAAADLA PRRGYQEYAI BACU013264/1-1211 ISVVLTAHEV IPGATKIVPV EAGPPETGAA DPEAAAADLA PRRGYQEYAI 251 300 ENSP00000367069/1-1243 QQTPYEQPMK SSRLGPTQLK IFTCEYCNKV FKFKHSLQAH LRIHTNEKPY ENSBTAP00000023578/1-1237 QQTAYEQPMK SSRLGPTQLK IFTCEYCNKV FKFKHSLQAH LRIHTKEKPY ENSTTRP00000003487/1-1237 QQTPYEQPMK SSRLGPTQLK IFTCEYCNKV FKFKHSLQAH LRIHTNEKPY bmy_20072T0/1-815 QQTPYEQPMK SSRLGPTQLK IFTCEYCNKV FKFKHSLQAH LRIHTNEKPY BACU013264/1-1211 QQTPYEQPMK SSRLGPTQLK IFTCEYCNKV FKFKHSLQAH LRIHTNEKPY 301 350 ENSP00000367069/1-1243 KCPQCSYASA IKANLNVHLR KHTGEKFACD YCSFTCLSKG HLKVHIERVH ENSBTAP00000023578/1-1237 KCSQCSYASA IKANLNVHLR KHTGEKFACD CCSFTCLSKG HLKVHVERVH ENSTTRP00000003487/1-1237 KCSQCSYASA IKANLNVHLR KHTGEKFACD CCSFTCLSKG HLKVHVERVH bmy_20072T0/1-815 KCSQCSYASA IKANLNVHLR KHTGEKFACD CCSFTCLSKG HLKVHVERVH BACU013264/1-1211 KCSQCSYASA IKANLNVHLR KHTGEKFACD CCSFTCLSKG HLKVHVERVH 351 400 ENSP00000367069/1-1243 KKIKQHCRFC KKKYSDVKNL IKHIRDAHDP QDKKVKEALD ELCLMTREGK ENSBTAP00000023578/1-1237 KKIKQHCRFC KKKYSDVKNL IKHIRDAHDP QDKPVQEALD ELCLMTREGK ENSTTRP00000003487/1-1237 KKIKQHCRFC KKKYSDVKNL IKHIRDAHDP QDKKVQEALD ELCLMTREGK bmy_20072T0/1-815 KKIKQHCRFC KKKYSDVKNL IKHIRDAHDP QDHKVQEALD ELCLMTREGK BACU013264/1-1211 KKIKQHCRFC KKKYSDVKNL IKHIRDAHDP QDHKVQEALD ELCLMTREGK 401 450 ENSP00000367069/1-1243 RQLLYDCHIC ERKFKNELDR DRHMLVHGDK WPFACELCGH GATKYQALEL ENSBTAP00000023578/1-1237 RQLLYDCHIC ERKFKNELDR DRHMLVHGDK WPFACELCGH GATKYQALEL ENSTTRP00000003487/1-1237 RQLLYDCHIC ERKFKNELDR DRHMLVHGDK WPFACELCGH GATKYQALEL bmy_20072T0/1-815 RQLLYDCHIC ERKFKNELDR DRHMLVHGDK WPFACELCGH GATKYQALEL BACU013264/1-1211 RQLLYDCHIC ERKFKNELDR DRHMLVHGDK WPFACELCGH GATKYQALEL 451 500 ENSP00000367069/1-1243 HVRKHPFVYV CAVCRKKFVS SIRLRTHIKE VHGAAQEALV FTSSINQSFC ENSBTAP00000023578/1-1237 HVRKHPFVYV CALCPKKFVS SIRLRAHIKE AHGAAQETLV FTSSINQSFC ENSTTRP00000003487/1-1237 HVRKHPFVYV CALCLKKFVS SIRLRAHIKE AHGAAQETLV FTSSINQSFC bmy_20072T0/1-815 HVRKHPFVYV CALCLKKFVS SIRLRTHIKE AHGAAQETLV FTSSINQSFC BACU013264/1-1211 HVRKHPFVYV CALCLKKFVS SIRLRAHIKE AHGAAQETLV FTSSINQSFC 501 550 ENSP00000367069/1-1243 LLEPGGDIQQ EALGDQLQLV EEEFALQGVN ALKEEACPGD TQLEEGRKEP ENSBTAP00000023578/1-1237 LLEPGGDIQQ EALGGQLQLA EEEFVFQGVN VPKEAASPGQ ARPAVE---P ENSTTRP00000003487/1-1237 LLGPGGDIQQ EALGGQLQLA EEEFVFQGVN APKEAAGAGD ARPEEG---S bmy_20072T0/1-815 LLGPGGDIQQ EALGGQLQLV EEEFVFQGVN APKEAAGAGD ARPEEG---- BACU013264/1-1211 LLGPGGDIQQ EALGGQLQLA EEEFVFQGVN APKEAAGAGD ARPEEG---- 551 600 ENSP00000367069/1-1243 EAPGEMPAPA VHLASPQAES TALPP--CEL ETTVVSSSDL HSQEVVSDDF ENSBTAP00000023578/1-1237 RAPAEVPASP VRLAAAQPNG TAPAPPPSEL AASAM-SPDL RPHAGLSSEF ENSTTRP00000003487/1-1237 EAPTEVSAAP VCSAAAQADS AAPAP--CEL AASAV-SSDL CRHAVVSDEF bmy_20072T0/1-815 ---SEVPAAP VRSAAAQADS AAPAP--CEL AASAV-SSDL RPHAVVSDEL BACU013264/1-1211 ---------- -----SEADS AAPAP--CEP AASAV-SSDL RPRAVVSDEL 601 650 ENSP00000367069/1-1243 LLKNDTSSAE AHAA-PEKPP DMQHRSSVQT QGEVITLLLS KAQSAGSDQE ENSBTAP00000023578/1-1237 LMKSDPPTAE APAATPEKTG DTQQGGAAPI QGQDVAPLLS KAKGMEANSE ENSTTRP00000003487/1-1237 LLKSDPSSAE ALAA-PEKTL HTQQGGSVQ- QGQDVAPLLS KAKGAAANPE bmy_20072T0/1-815 LLKSDPSSAE ALAA-PEKTL HTQQGGSTPA QGQDVAPLLS KAKGAAANPE BACU013264/1-1211 LLKSDPSSAE ALAA-PEKTL HTQRGGPTPA QGQDVAPLLS KAKGAAANPE 651 700 ENSP00000367069/1-1243 SHGAQSPLGE GQNMAVLSAG DPDPSRCLRS NPAEASDLLP PVAGGGDTIT ENSBTAP00000023578/1-1237 APGAKSPPAE GQKVAAFSCD GPDPSRGLRS NPAQASD-PP PGAGGREAAL ENSTTRP00000003487/1-1237 AQGAKSPPAE GQQVAALSSD GPDPGRGLRA NPAEASD-PP PGAGGRDAAL bmy_20072T0/1-815 AQGAESPPAE GQEVADLPSD GPDAGRGLRA NPAEASD-PP PGAGGRDAAL BACU013264/1-1211 AQGAESPPAE GQQEAALPSD GPDAGRGLRA NPAEASD-PP PGAGGRDAAL 701 750 ENSP00000367069/1-1243 HQPDSCKAAP EHRSGITAFM KVLNSLQKKQ MNTSLCERIR KVYGDLECEY ENSBTAP00000023578/1-1237 CQPASCTPAP EHRAGLTAFM KILDSLQKRR MNTGLCERIR KVYGDLECEY ENSTTRP00000003487/1-1237 CRPDSCTPLP EHRAGITAFM KILDSLQKRR MNTGLCERIR KVYGDLECEY bmy_20072T0/1-815 CRPDSCTPAP EHRAGITAFM KILDSLQKRR MNTGLCERIR KVYGDLECEY BACU013264/1-1211 CRPDSRTPAP ELRAGITAFM KILDSLQKRR MNTGLCERIR KVYGDLECEY 751 800 ENSP00000367069/1-1243 CGKLFWYQVH FDMHVRTHTR EHLYYCSQCH YSSITKNCLK RHVIQKHSNI ENSBTAP00000023578/1-1237 CGKLFWYQVH FDMHVRTHTR EHLYYCSQCH YSSITKNCLK RHVIQKHSNI ENSTTRP00000003487/1-1237 CGKLFWYQVH FDMHVRTHTR EHLYYCSQCH YSSITKNCLK RHVIQKHSNI bmy_20072T0/1-815 CGKLFWYQVH FDMHVRTHTR EHLYYCSQCH YSSITKNCLK RHVIQKHSNI BACU013264/1-1211 CGKLFWYQVH FDMHVRTHTR EHLYYCSQCH YSSITKNCLK RHVIQKHSNI 801 850 ENSP00000367069/1-1243 LLKCPTDGCD YSTPDKYKLQ AHLKVHTALD KRSYSCPVCE KSFSEDRLIK ENSBTAP00000023578/1-1237 LLKCPTDGCD YSTPDKYKLQ AHLKVHTELD KRSYSCPVCE KSFSEDRLIK ENSTTRP00000003487/1-1237 LLKCPTDGCD YSTPDKYKLQ AHLKVHTELD KRSYSCPVCE KSFSEDRLIK bmy_20072T0/1-815 LLKCPTDGCD YSTPDKYKLQ AHLKVHTELD KRSYSCPVCE KSFSEDRLIK BACU013264/1-1211 LLKCPTDGCD YSTPDKYKLQ AHLKVHTELD KRSYSCPVCE KSFSEDRLIK 851 900 ENSP00000367069/1-1243 SHIKTNHPEV SMSTISEVLG RRVQLKGLIG KRAMKCPYCD FYFMKNGSDL ENSBTAP00000023578/1-1237 SHIKTNHPEV SMSTISEVLG RRVQLKGLIG KRAMKCPYCD FYFMKNGSDL ENSTTRP00000003487/1-1237 SHIKTNHPEV SMSTISEVLG RRVQLKGLIG KRAMKCPYCD FYFMKNGSDL bmy_20072T0/1-815 SHIKTNHPEV SMSTISEVLG RRVQLKGLIG KRAMKCPYCD FYFMKNGSDL BACU013264/1-1211 SHIKTNHPEV SMSTISEVLG RRVQLKGLIG KRAMKCPYCD FYFMKNGSDL 901 950 ENSP00000367069/1-1243 QRHIWAHEGV KPFKCSLCEY ATRSKSNLKA HMNRHSTEKT HLCDMCGKKF ENSBTAP00000023578/1-1237 QRHIWAHEGV KPFKCSLCEY ATRSKSNLKA HMNRHSTEKT HLCDMCGKKF ENSTTRP00000003487/1-1237 QRHIWAHEGV KPFKCSLCEY ATRSKSNLKA HMNRHSTEKT HLCDMCGKKF bmy_20072T0/1-815 QRHIWAHEGV KPFKCSLCEY ATRSKSNLKA HMNRHSTEKT HLCDMCGKKF BACU013264/1-1211 QRHIWAHEGV KPFKCSLCEY ATRSKSNLKA HMNRHSTEKT HLCDMCGKKF 951 1000 ENSP00000367069/1-1243 KSKGTLKSHK LLHTADGKQF KCTVCDYTAA QKPQLLRHME QHVSFKPFRC ENSBTAP00000023578/1-1237 KSKGTLKSHK LLHTADGKQF KCTVCDYTAA QKPQLLRHME QHASFKPFRC ENSTTRP00000003487/1-1237 KSKGTLKSHK LLHTADGKQF KCAVCDYTAA QKPQLLRHME QHASFKPFRC bmy_20072T0/1-815 KSKGTLKSHK LLHTADGE-- ---------- ---------- ---------- BACU013264/1-1211 KSKGTLKSHK LLHTADGKQF KCTVCDYTAA QKPQLLRHME QHASFKPFRC 1001 1050 ENSP00000367069/1-1243 AHCHYSCNIS GSLKRHYNRK HPNEEYANVG TGELAAEVLI QQGGLKCPVC ENSBTAP00000023578/1-1237 AHCHYSCNIS GSLKRHYNRK HPNEEYSNVG TGELAADALI QQGGLKCPVC ENSTTRP00000003487/1-1237 AHCHYSCNIS GSLKRHYNRK HPNEEYTNVG TGELAADALI QQXXXXXXXX bmy_20072T0/1-815 ---------- ---------- ---------- ---------- ---------- BACU013264/1-1211 AHCHYSCNIS GSLKRHYNRK HPNEEYTNVG TGELAADALI QQGCLKCPVC 1051 1100 ENSP00000367069/1-1243 SFVYGTKWEF NRHLKNKHGL KVVEIDGDPK WETATEAPEE PSTQYLHITE ENSBTAP00000023578/1-1237 SFVYGTKWEF NRHLKNKHGL KLVESEGDPK WEPATEAPEE PSTQYLHIAE ENSTTRP00000003487/1-1237 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXPATETPEE PSTQYLHITE bmy_20072T0/1-815 ---------- ---------- ---------- ---------- ---------- BACU013264/1-1211 SFVYGTKWEF NRHLKNKHGL KLVENEGDPK WEPATETPEE PSTQYLHITE 1101 1150 ENSP00000367069/1-1243 AEEDVQGTQA AVAALQDLRY TSESGDRLDP TAVNILQQII ELGAETHDAT ENSBTAP00000023578/1-1237 AEEDVQGTQA AVAALQDLRY TSESGDRLDP TAVNILQQII ELGTETHDAT ENSTTRP00000003487/1-1237 AEEDVQGTQA AVAALQDLRY TSDSGDRLDP TAVNILQQII ELGTETHDAT bmy_20072T0/1-815 ---------- ---------- ---------- ---------- ---------- BACU013264/1-1211 AEEDVQGTQA AVAALQDLRY TSESGDRLDP TAVNILQQII ELGTETHDAT 1151 1200 ENSP00000367069/1-1243 ALASVVAMAP GTVTVVKQVT EEEPSSNHTV MIQETVQQAS VELAEQHHLV ENSBTAP00000023578/1-1237 AVASVVAMAP GTVTVVKQVT DEEPSSNHTV MIQETLQQAS VELAEQHHLV ENSTTRP00000003487/1-1237 AVASVVAMAP GTVTVVKQVT DEEPSSNHTV MIQETLQQAS VELAEQHHLV bmy_20072T0/1-815 ---------- ---------- ---------- ---------- ---------- BACU013264/1-1211 AVASVVAMAP GTVTVVKQVT DEEPSSNRTV MIQETLQQAA VELAEQHHLV 1201 1250 ENSP00000367069/1-1243 VSSDDVEGIE TVTVYTQGGE ASEFIVYVQE AMQPVEEQAV EQPAQEL ENSBTAP00000023578/1-1237 VSSDDVEGIE TVTVYTQGGE ASEFIVYVQE AVQPVEEQAS GPPAPEL ENSTTRP00000003487/1-1237 VSSDDVEGIE TVTVYTQGGE ASEFIVYVQE AVQPVEEQAV GQPAPEL bmy_20072T0/1-815 ---------- ---------- ---------- ---------- ------- BACU013264/1-1211 VSSDDVEGIE TVTVYTQGGE ASEFIVYVQE AMQPVEEQAV GQPAPEL