KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:21:03 2014 Check: 00 .. Name: ENSP00000216085/1-386 Len: 540 Check: 7850 Weight: 1.00 Name: ENSBTAP00000023599/1-386 Len: 540 Check: 4530 Weight: 1.00 Name: ENSTTRP00000011266/1-385 Len: 540 Check: 7039 Weight: 1.00 Name: bmy_01628T0/1-500 Len: 540 Check: 4201 Weight: 1.00 Name: BACU003352/1-365 Len: 540 Check: 7379 Weight: 1.00 // 1 50 ENSP00000216085/1-386 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023599/1-386 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011266/1-385 ---------- ---------- ---------- ---------- ---------- bmy_01628T0/1-500 MGSGRSGVGG RLEYRLPAKG STRPSGVGGA LRREYPRHVA RSAGEGAKAG BACU003352/1-365 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000216085/1-386 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023599/1-386 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011266/1-385 ---------- ---------- ---------- ---------- ---------- bmy_01628T0/1-500 PPFNFPFPVL PTPGSFPGPI RAQGPFGLAS SHPHTSHTAP RPPLITFRQA BACU003352/1-365 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000216085/1-386 MHARGPHGQL SPALPLASSV LMLLMSTLWL VGAGPGLVLA PELLLDPWQ- ENSBTAP00000023599/1-386 MHARGPPGLP TPALPLASSV LMLLMSTLWL LGAGPSLVLA PELLLDPRQ- ENSTTRP00000011266/1-385 MHARGPPGLL TPALPLASSV LMLLMSSLWL LGAGPSLVLA PELLLDPWQ- bmy_01628T0/1-500 MHARGPPGLL TPALPLASSV LMLLMSGLWL LGAGPSLVLA PELLLDPWQV BACU003352/1-365 ---------- ---------- -MLLMSGLWL LGAGPSLVLA PELLLDPWQ- 151 200 ENSP00000216085/1-386 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023599/1-386 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011266/1-385 ---------- ---------- ---------- ---------- ---------- bmy_01628T0/1-500 IKLLAVGRLW LPGRGGWLSG WPWWRVFPHL AHLGQPWGLG ALTWHISPFS BACU003352/1-365 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000216085/1-386 --VHRLLTHA LGHTALPGLL LSLLLLPTVG WQQECHLGTL RFLHASALLA ENSBTAP00000023599/1-386 --AHRLLTHA LGHTALPGLL LSLLLLPTLG WQQERHLGTL RFLHASSLLA ENSTTRP00000011266/1-385 --AHRLLTHA LGHKALPGLL LSLLLLPTLG WRQECHLGTL RFLHASTLLA bmy_01628T0/1-500 LPAHRLLTHA LGHKALPGLL LSLLLLPTLG WRQECHLGTL RFLHASTLLA BACU003352/1-365 --AHRLLTHA LGHKALPGLL LSLLLLPTLG WRQECHLGTL RFLHASTLLA 251 300 ENSP00000216085/1-386 LASGLLAVLL AGLGLSSAAG SCGYMPVHLA MLAGEGHRPR RPRGALPPWL ENSBTAP00000023599/1-386 LASGLLAVLL AGLGVSGAAG GCGYMPVHLA MLAGQGSRPR RPRGALPPWL ENSTTRP00000011266/1-385 LASGLIAVLL AGLGVSSAAR GCGYMPVHLA MLAGQGYNPR RTRGALPPWL bmy_01628T0/1-500 LASGLMAVLL AGLGVSSAAG GCGYMPVHLA MLAGQGYHPR RPRGALPPWL BACU003352/1-365 LASGLMAVLL AGLGVSSAAG GCGYMPVHLA MLAGQGYHPR RPRGALPPWL 301 350 ENSP00000216085/1-386 SPWLLLALTP LLSSEPPFLQ LLCGLLAGLA YAAGAFRWLE PSERRLQVLQ ENSBTAP00000023599/1-386 LPWLLLALTP LLSSEPPFLQ LFCGLLAGLA YAAGAFRWLE LSEQRLQALQ ENSTTRP00000011266/1-385 LP-LLLALTP LLNSEPPFLQ LXXXXXXXXX XAAGAFRWLE ISEQRLQALQ bmy_01628T0/1-500 LPWLLLALTP LLSSEPPFLQ LFCGLLAGLA C--------- ---------- BACU003352/1-365 LPWLLLALTP LLSSEPPFLQ LFCGLLAGLA YAAGAFRWLE ISEQRLQALQ 351 400 ENSP00000216085/1-386 EGVLCRTLAG CWPLRLLATP GSLAELPVTH PAGVRPPIPG PPYVASPDLW ENSBTAP00000023599/1-386 EGVLCKALAG CWPLRLLPAP GGPAELPVAH PAGVRPPTPG PPRMASPSLW ENSTTRP00000011266/1-385 EGVLCRALAG CWPLQLLPTP GGLAELPVTH PAGVRPPTPG PPYMASPSLW bmy_01628T0/1-500 ---------- ---------- -SQAELPVTH PAGVRPPTPG PPYMASPSLW BACU003352/1-365 EGVLCRALAG CWPLQLLPTP GSQGELPVTH PAGVRPPTPG PPYMASPSLW 401 450 ENSP00000216085/1-386 SHWEDSALPP PSLRPVQPTW EGSSEAGLDW AGASFSPGTP MWAALDEQML ENSBTAP00000023599/1-386 PLSEGSAPIL PGLKPVQPLL EGSSEAGLAW SRPGFPPGTP LWAALDQQML ENSTTRP00000011266/1-385 PLREGSAPLP PGLGPMQPLW EGSSEVGLAW SGPSFPPGTP LWAALDEQML bmy_01628T0/1-500 PLSEGSAPLP PGVGPVQPLW EGSSEVGLAW SGPSFPPGTP LWAALDEQIL BACU003352/1-365 PLSEGSAPLP PGLGPVQPLW EGSSEVGLAW SGPSFPPGTP LWAALDEQIL 451 500 ENSP00000216085/1-386 QEGIQASLLD GPAQEPQSAP WLSKSSVSSL RLQQLERMGF PTEQAVVALA ENSBTAP00000023599/1-386 QEGIEASLLE GPAQGPESPL WLPKSSVSSL RLQQLERMGF PTEQAVVALA ENSTTRP00000011266/1-385 QKGIQASLLE GPVQGPESPL RLSKSSVSSL RLQQLERMGF PTEQAVVALA bmy_01628T0/1-500 QKGIQASLLE GPVQGPESPL RLPKSSVSSL RLQQLERMGF PTEQAVVALA BACU003352/1-365 QKGIQASLLE GPAQGPESPL RLPKSSVSSL RLQQLERMGF PTEQAVVALA 501 550 ENSP00000216085/1-386 ATGRVEGAVS LLVGGQVGTE TLVTHGKGGP A-HSEGPGPP ENSBTAP00000023599/1-386 ATGRVEGAVA LLVGGEVGTE ALVTQGREGP T-HPEGPGPP ENSTTRP00000011266/1-385 ATSRVEGAVS LLVGGDVGTE ALVTQGRGGP T-HPEGPGPP bmy_01628T0/1-500 ATGRVEGAVS LLVGGEVGTE ALVTQGRGDR VTHPEGPGPP BACU003352/1-365 ATGRVEGAVS LLVGGEVGTE ALVTQGRGGP T-HPEGPGPP