KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:21:10 2014 Check: 00 ..
Name: ENSP00000400142/1-661 Len: 662 Check: 2773 Weight: 1.00
Name: ENSBTAP00000023612/1-655 Len: 662 Check: 3967 Weight: 1.00
Name: ENSTTRP00000011269/1-662 Len: 662 Check: 9112 Weight: 1.00
Name: bmy_01627T0/1-656 Len: 662 Check: 7028 Weight: 1.00
Name: BACU003351/1-661 Len: 662 Check: 1996 Weight: 1.00
//
1 50
ENSP00000400142/1-661 MASTDYSTYS QAAAQQGYSA YTAQPTQGYA QTTQAYGQQS YGTYGQPTDV
ENSBTAP00000023612/1-655 MASTDYSTYS QAAAQQGYSA YTAQPTQGYA QTTQAYGQQS YGTYGQPTDV
ENSTTRP00000011269/1-662 MASTDYSTYS QAAAQQGYSA YTAQPTQGYA QTTQAYGQQS YGTYGQPTDV
bmy_01627T0/1-656 MASTDYSTYS QAAAQQGYSA YTAQPTQGYA QTTQAYGQQS YGTYGQPTDV
BACU003351/1-661 MASTDYSTYS QAAAQQGYSA YTAQPTQGYA QTTQAYGQQS YGTYGQPTDV
51 100
ENSP00000400142/1-661 SYTQAQTTAT YGQTAYATSY GQPPTVEGTS TGYTTPTAPQ AYSQPVQGYG
ENSBTAP00000023612/1-655 SYTQAQTTAT YGQTAYATSY GQPP------ TGYSTPAAPQ AYSQPVQGYG
ENSTTRP00000011269/1-662 SYTQAQTTAT YGQTAYATSY GQPPTVEGTS TGYSTPTAPQ AYSQPVQGYG
bmy_01627T0/1-656 SYTQAQTTAT YGQTAYATSY GQPP------ TGYSTPTAPQ AYSQPVQGYG
BACU003351/1-661 SYTQAQTTAT YGQTAYATSY GQPPTVEGTS TGYSTPTAPQ AYSQPVQGYG
101 150
ENSP00000400142/1-661 TGAYDTTTAT VTTTQASYAA QSAYGTQPAY PAYGQQPAAT APTRPQDGNK
ENSBTAP00000023612/1-655 TGAYDTTTAT VTTTQASYAA QSAYGTQPAY PAYGQQPAAT APARPQDGNK
ENSTTRP00000011269/1-662 TGAYDTTTAT VTTTQASYAA QSAYGTQPAY PAYGQQPAAT APARPQXXXX
bmy_01627T0/1-656 TGAYDTTTAT VTTTQASYAA QSAYGTQPAY PAYGQQPAAT APARPQDGNK
BACU003351/1-661 TGAYDTTTAT VTTTQASYAA QSAYGTQPAY PAYGQQPAAT APARPQDGNK
151 200
ENSP00000400142/1-661 PTETSQPQSS TGGYNQPSLG YGQSNYSYPQ VPGSYPMQPV TAPPSYPPTS
ENSBTAP00000023612/1-655 PAETSQPQSS TGGYNQPSLG YGQSNYSYPQ VPGSYPMQPV SAPPSYPPTS
ENSTTRP00000011269/1-662 XXXXXQPQSS TGGYNQPSLG YGQSNYSYPQ VPGSYPMQPV TAPPSYPPTS
bmy_01627T0/1-656 PAETSQPQSS TGGYNQPSLG YGQSNYSYPQ VPGSYPMQPV TAPPSYPPTS
BACU003351/1-661 PAETSQPQSS TGGYNQPSLG YGQSNYSYPQ VPGSYPMQPV TAPPSYPPTS
201 250
ENSP00000400142/1-661 YSSTQPTSYD QSSYSQQNTY GQPSSYGQQS SYGQQSSYGQ QPPTSYPPQT
ENSBTAP00000023612/1-655 YSSTQPTSYD QSSYSQQNTY GQPSSYGQQS SYGQQSSYGQ QPPTSYPPQT
ENSTTRP00000011269/1-662 YSSTQPTSYD QSSYSQQNTY GQPSSYGQQS SYGQQSSYGQ QPPTSYPPQT
bmy_01627T0/1-656 YSSTQPTSYD QSSYSQQNTY GQPSSYGQQS SYGQQSSYGQ QPPTSYPPQT
BACU003351/1-661 YSSTQPTSYD QSSYSQQNTY GQPSSYGQQS SYGQQSSYGQ QPPTSYPPQT
251 300
ENSP00000400142/1-661 GSYSQAPSQY SQQSSSYGQQ SSFRQDHPSS MGVYGQESGG FSGPGENRSM
ENSBTAP00000023612/1-655 GSYSQAPSQY SQQSSSYGQQ SSFRQDHPSS MGVYGQESGG FSGPGENRSM
ENSTTRP00000011269/1-662 GSYSQAPSQY SQQSSSYGQQ SSFRQDHPSS MGVYGQESGG FSGPGENRSM
bmy_01627T0/1-656 GSYSQAPSQY SQQSSSYGQQ SSFRQDHPSS MGVYGQESGG FSGPGENRSM
BACU003351/1-661 GSYSQAPSQY SQQSSSYGQQ SSFRQDHPSS MGVYGQESGG FSGPGENRSM
301 350
ENSP00000400142/1-661 SGPDNRGRGR GGFDRGGMSR GGRGGGRGGM G-AGERGGFN KPGGPMDEGP
ENSBTAP00000023612/1-655 SGPDNRGRGR GGFDRGGMSR GGRGGGRGGM G-AGERGGFN KPGGPMDEGP
ENSTTRP00000011269/1-662 SGPDNRGRGR GGFDRGGMSR GGRGGGRGGM GSAGERGGFN KPGGPMDEGP
bmy_01627T0/1-656 SGPDNRGRGR GGFDRGGMSR GGRGGGRGGM GSAGERGGFN KPGGPMDEGP
BACU003351/1-661 SGPDNRGRGR GGFDRGGMSR GGRGGGRGGM G-AGERGGFN KPGGPMDEGP
351 400
ENSP00000400142/1-661 DLDLGPPVDP DEDSDNSAIY VQGLNDSVTL DDLADFFKQC GVVKMNKRTG
ENSBTAP00000023612/1-655 DLDLGPPVDP DEDSDNSAIY VQGLNDSVTL DDLVDFFKQC GVVKMNKRTG
ENSTTRP00000011269/1-662 DLDLGPPVDP DEDCDNSAIY VQGLSDSVTL DDLADFFKQC GVVKINKRTG
bmy_01627T0/1-656 DLDLGPPVDP DEDCDNSAIY VQGLSDNVTL DDLADFFKQC GVVKINKRTG
BACU003351/1-661 DLDLGPPVDP DEDCDNSAIY VQGLSDNVTL DDLADFFKQC GVVKINKRTG
401 450
ENSP00000400142/1-661 QPMIHIYLDK ETGKPKGDAT VSYEDPPTAK AAVEWFDGKD FQGSKLKVSL
ENSBTAP00000023612/1-655 QPMIHIYLDK ETGKPKGDAT VSYEDPATAK AAVEWFDGKD FQGSKLKVSL
ENSTTRP00000011269/1-662 QPMIHIYLDK ETGKPKGDAT VSYEDPPTAK TAVEWFDGKD FQGSKLKVSL
bmy_01627T0/1-656 QPMIHIYLDK ETGKPKGDAT VSYEDPPTAK TAVEWFDGKD FQGSKLKVSL
BACU003351/1-661 QPMIHIYLDK ETGKPKGDAT VSYEDPPTAK TAVEWFDGKD FQGSKLKVSL
451 500
ENSP00000400142/1-661 ARKKPPMNSM RGGLPPREGR GMPPPLRGGP GGPGGPGGPM GRMGGRGGDR
ENSBTAP00000023612/1-655 ARKKPPMNSM RGGMPPREGR GMPPPLRGGP GGPGGPGGPM GRMGGRGGDR
ENSTTRP00000011269/1-662 ARKKPPMNSM RGGMPPREGR GMPPPLRGGP GGPGGPGGPM GRMGGRGGDR
bmy_01627T0/1-656 ARKKPPMNSM RGGMPPREGR GMPPPLRGGP GGPGGPGGPM GRMGGRGGDR
BACU003351/1-661 ARKKPPMNSM RGGMPPREGR GMPPPLRGGP GGPGGPGGPM GRMGGRGGDR
501 550
ENSP00000400142/1-661 GGFPPRGPRG SRGNPSGGGN VQHRAGDWQC PNPGCGNQNF AWRTECNQCK
ENSBTAP00000023612/1-655 GGFPPRGPRG SRGNPSGGGN VQHRAGDWQC PNPGCGNQNF AWRTECNQCK
ENSTTRP00000011269/1-662 GGFPPRGPRG SRGNPSGGGN VQHRAGDWQC PNPGCGNQNF AWRTECNQCK
bmy_01627T0/1-656 GGFPPRGPRG SRGNPSGGGN VQHRAGDWQC PNPGCGNQNF AWRTECNQCK
BACU003351/1-661 GGFPPRGPRG SRGNPSGGGN VQHRAGDWQC PNPGCGNQNF AWRTECNQCK
551 600
ENSP00000400142/1-661 APKPEGFLPP PFPPPGGDRG RGGPGGMRGG RGGLMDRGGP GGMFRGGRGG
ENSBTAP00000023612/1-655 APKPEGFLPP PFPPPGGDRG RGGPGGMRGG RGGLMDRGGP GGMFRGGRGG
ENSTTRP00000011269/1-662 APKPEGFLPP PFPPPGGDRG RGGPGGMRGG RGGLMDRGGP GGMFRGGRGG
bmy_01627T0/1-656 APKPEGFLPP PFPPPGGDRG RGGPGGMRGG RGGLMDRGGP GGMFRGGRGG
BACU003351/1-661 APKPEGFLPP PFPPPGGDRG RGGPGGMRGG RGGLMDRGGP GGMFRGGRGG
601 650
ENSP00000400142/1-661 DRGGFRGGRG MDRGGFGGGR RGGPGGPPGP LMEQMGGRRG GRGGPGKMDK
ENSBTAP00000023612/1-655 DRGGFRGGRG MDRGGFGGGR RGGPGGPPGP LMEQMGGRRG GRGGPGKMDK
ENSTTRP00000011269/1-662 DRGGFRGTRG MDRGGFGGGR RGGPGGPPGP LMEQMGGRRG GRGGPGKMDK
bmy_01627T0/1-656 DRGGFRGTRG MDRGGFGGGR RGGPGGPPGP LMEQMGGRRG GRGGPGKMDK
BACU003351/1-661 DRGGFRGTRG MDRGGFGGGR RGGPGGPPGP LMEQMGGRRG GRGGPGKMDK
651 700
ENSP00000400142/1-661 GEHRQERRDR PY
ENSBTAP00000023612/1-655 GEHRQERRDR PY
ENSTTRP00000011269/1-662 GEHRQERRDR PY
bmy_01627T0/1-656 GEHRQERRDR PY
BACU003351/1-661 GEHRQERRDR PY