KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:21:14 2014 Check: 00 .. Name: BACU005255/1-533 Len: 789 Check: 2148 Weight: 1.00 Name: ENSTTRP00000003739/1-626 Len: 789 Check: 7292 Weight: 1.00 Name: bmy_17035T0/1-379 Len: 789 Check: 2058 Weight: 1.00 Name: ENSP00000320543/1-641 Len: 789 Check: 3607 Weight: 1.00 Name: ENSBTAP00000023644/1-639 Len: 789 Check: 5741 Weight: 1.00 // 1 50 BACU005255/1-533 MAVAAGCLAC GNGGWSGFVT AVCLRAKPVG SYYSDEEAKA R----SRPTS ENSTTRP00000003739/1-626 ---------- ------MTTS SIRRQMKNIV NNYSEAEIKV REATSNDPWG bmy_17035T0/1-379 ---------- --------MH RTQRRARG-- -----AQARV AVFCFRRPRG ENSP00000320543/1-641 ---------- ------MTTS SIRRQMKNIV NNYSEAEIKV REATSNDPWG ENSBTAP00000023644/1-639 ---------- ------MTTS SIRRQMKNIV NNYSEAEIKV REATSNDPWG 51 100 BACU005255/1-533 PEAAV----- ---------- ---------- ------WT-- ---------- ENSTTRP00000003739/1-626 PSSSLMTEIA DLTYNVVAFS EIMSMVWKRL NDHGKNWRHV YKALTLLDYL bmy_17035T0/1-379 PLSRLPSE-- ---------- ---------- -----DWP-- ---------- ENSP00000320543/1-641 PSSSLMTEIA DLTYNVVAFS EIMSMVWKRL NDHGKNWRHV YKALTLLDYL ENSBTAP00000023644/1-639 PSSSLMTEIA DLTYNVVAFS EIMSMVWKRL NDHGKNWRHV YKALTLLDYL 101 150 BACU005255/1-533 ---------- ---------- ---DLDHRDR QKEEGG---- ---------- ENSTTRP00000003739/1-626 IKTGSERVAQ QCRENIFAIQ TLKDFQYFDR DGKDQGVNVR EK-QQLVALL bmy_17035T0/1-379 ---------- ---------- ---------- ---------- ---------- ENSP00000320543/1-641 IKTGSERVAQ QCRENIFAIQ TLKDFQYIDR DGKDQGINVR EKSKQLVALL ENSBTAP00000023644/1-639 IKTGSERVAQ QCRENIFAIQ TLKDFQYVDR DGKDQGVNVR EKAKQLVALL 151 200 BACU005255/1-533 ---------- ---------- ---------- --GPGRQSRS PLPMEARGQS ENSTTRP00000003739/1-626 DEERLAEVQA PQTRMVK--- -------GTH GSSSYRGSSQ PNLSTSYSEQ bmy_17035T0/1-379 ---------- ---------- ---------- ---------- ---------- ENSP00000320543/1-641 KDEERLKAER AQALKTKERM AQVATGMGSN QITFGRGSSQ PNLSTSHSEQ ENSBTAP00000023644/1-639 KDEERLKAER AQALKTKERM AQVATGMGSN QITFGRGSSQ PNLSTSYSEQ 201 250 BACU005255/1-533 GY----QSLV SAVGDGGERL VAVGRVE--- ---------- ---------- ENSTTRP00000003739/1-626 EYGKAGGSPA SYHGSLEALL CPQHRTEAPQ GQSKEPLLLS QRPPFLPCPG bmy_17035T0/1-379 ---------- ---------- CPS------- ---------- ---------- ENSP00000320543/1-641 EYGKAGGSPA SYHGSPEASL CPQHRTGAPL GQSEELQPLS QRHPFLPHLG ENSBTAP00000023644/1-639 EYGKAGGSPA SYHGSPEASL CPQHRTGPLW GQSEEPPP-S HRPPFLLRPG 251 300 BACU005255/1-533 -----SSDLG KA----WPPA ---TSPRVSS ELEQARPQTS GEEELQLQLA ENSTTRP00000003739/1-626 LPSCCAGVLA QPCLT-WARA --ATSPRVSS ELEQARPQTS GEEELQLQLA bmy_17035T0/1-379 -----RPEWP QPRVWGWTVA SLSTA----- ---------- ---------- ENSP00000320543/1-641 LASRPNGDWS QPCLT-CDRA ARATSPRVSS ELEQARPQTS GEEELQLQLA ENSBTAP00000023644/1-639 PPSCPASHLA QPCLS-WDPA AQATSPRVSS ELEQARPQTS GEEELQLQLA 301 350 BACU005255/1-533 LAMSREVAEQ EERLRRGDDL RLQMALEESR RDTVKVPRKK E-HGSHPQQT ENSTTRP00000003739/1-626 LAMSREVAEQ EERLRRGDDL RLQMALEESR RDTVKFPKKK E-HGSHPQQT bmy_17035T0/1-379 ---------- ---------- ---------- ---------- --HGSHPQQT ENSP00000320543/1-641 LAMSREVAEQ EERLRRGDDL RLQMALEESR RDTVKIPKKK E-HGSLPQQT ENSBTAP00000023644/1-639 LAMSREVAEQ EERLRRGDDL RLQMALEESR RDTVKVPKKK EQHGSHPQQT 351 400 BACU005255/1-533 TLLDLMDALP SAGPAAPKAE PWGPSASASQ TNPWGAPAAP GSTSDPWPSF ENSTTRP00000003739/1-626 TLLDLLDALP GAGPAAPKAE PWGPSASASH TNPWGAPAAP GSTSDPWPSF bmy_17035T0/1-379 TLLDLMDALP SAGPAAPKAE PWGPSASASQ TNPWGAPAAP GSTSDPWPSF ENSP00000320543/1-641 TLLDLMDALP SSGPAAQKAE PWGPSASTNQ TNPWGGPAAP ASTSDPWPSF ENSBTAP00000023644/1-639 TLLDLMDALP SAGPAAQKAE PWGPSTSASQ TNPWGAPAAP ASTADPWPSF 401 450 BACU005255/1-533 GKDLPRAKPA TSVDPWGVPT GAGTRSVPRG SDPWAAPQQP XXXXXXXXXX ENSTTRP00000003739/1-626 G-----AKPA TSVDPWGVPT GAGARSVPKG SDPWAAPQQP A--------- bmy_17035T0/1-379 GKDLPRAKPA TSVDPWGVPT GAGTHSVPKG SDPWAAPQQP A--------- ENSP00000320543/1-641 G-----TKPA ASIDPWGVPT GATVQSVPKN SDPWAASQQP A--------- ENSBTAP00000023644/1-639 G-----AKPA ASVDPWGAPT GAGTHSAPKG SDPWAAPQQP A--------- 451 500 BACU005255/1-533 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXSAA KPASPSGERP ENSTTRP00000003739/1-626 ---------- ---------- ---------- ---------- ---------- bmy_17035T0/1-379 ---------- ---------- ---------- ---------- ---------- ENSP00000320543/1-641 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023644/1-639 ---------- ---------- ---------- ---------- ---------- 501 550 BACU005255/1-533 PHPRPLGFGL GRGRRAGAAE RPALRGEAPP GALLAHPGTP HPRCPPTLRV ENSTTRP00000003739/1-626 ---------- ---------- ---------- ---------- ---------- bmy_17035T0/1-379 ---------- ---------- ---------- ---------- ---------- ENSP00000320543/1-641 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023644/1-639 ---------- ---------- ---------- ---------- ---------- 551 600 BACU005255/1-533 LPREGYGRQP TSGPPRPPLG KHKAEKWGHH TVTATLSP-G AFVFFSNLNG ENSTTRP00000003739/1-626 ---------- ------PSAG K-AADPWAAA SAAKPASPSG AFDLFSNLNG bmy_17035T0/1-379 ---------- ------PSAG K-AADPWAAA SAAKPASPSG AFDLFSNLNG ENSP00000320543/1-641 ---------- ------SSAG KRASDAWGAV STTKPVSVSG SFELFSNLNG ENSBTAP00000023644/1-639 ---------- ------PSAG K-AADPWAAA SAAKPVSSSG SFDLFSNLNG 601 650 BACU005255/1-533 TIKDHFSEFD NLRTSEKAAK AASP-PAQNH GTTSPDPFES RPPTVASSKP ENSTTRP00000003739/1-626 TIKDDFSEFD NLRASKKAAK AASP-PAQNS GTTSPDPXXX XXXXXXXXXX bmy_17035T0/1-379 TIKDDFSEFD NLRTSEKTAK AASP-PAQNS GTTSPDPFES QPPTVASSKP ENSP00000320543/1-641 TIKDDFSEFD NLRTSKKTAE SVTSLPSQNN GTTSPDPFES QPLTVASSKP ENSBTAP00000023644/1-639 TIKDDFSEFD NLRTSKKAAK AASP-PTQNN GTSSPDPFES QPLTVASSKP 651 700 BACU005255/1-533 SGTRKTPESF LGPSAALVNL DSLVTRPAPP AQPLNPFLAP G--------- ENSTTRP00000003739/1-626 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XAAAASAPVN bmy_17035T0/1-379 SGTRKTPESF LGPNAALVNL DSLVTRPAPP AQSLNPFLAP GAAAASAPVN ENSP00000320543/1-641 SSARKTPESF LGPNAALVNL DSLVTRPAPP AQSLNPFLAP GAPATSAPVN ENSBTAP00000023644/1-639 SGARKTPESF LGPNAALVNL DSLVTRPAPP AQALNPFLAP GAATASAPVN 701 750 BACU005255/1-533 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003739/1-626 PFQVNQPQPL TLNQLRGSPV LGSSTSFGPG PAVEPVAVAS VTSAASHPAL bmy_17035T0/1-379 PFQVNQPQPL TLNQLRGSPV LGSSASFGPG PAVEPVAVAS MTSAASHPAL ENSP00000320543/1-641 PFQVNQPQPL TLNQLRGSPV LGTSTSFGPG PGVESMAVAS MTSAAPQPAL ENSBTAP00000023644/1-639 PFQVNQPQPL TLNQLRGSPV LGGSASFGPS PGVEPVAVAS MTSAASHPGL 751 800 BACU005255/1-533 ---------- ---------- ---------- --------- ENSTTRP00000003739/1-626 GAGGSSLPPL GPAAVNMVGS LGVPPSAAQA TGTTNPFLL bmy_17035T0/1-379 GAGGSSLPPL GPAAMNMVGS LGIPPSAAQA TGTTNPFLL ENSP00000320543/1-641 GATGSSLTPL GPAMMNMVGS VGIPPSAAQA TGTTNPFLL ENSBTAP00000023644/1-639 GASSSSLPPL GPAAMNIVGS LGVPQSAAQA TGTTNPFLL