KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:21:17 2014 Check: 00 .. Name: ENSTTRP00000001936/1-550 Len: 592 Check: 861 Weight: 1.00 Name: bmy_15255T0/1-425 Len: 592 Check: 2890 Weight: 1.00 Name: ENSP00000381340/1-587 Len: 592 Check: 4226 Weight: 1.00 Name: ENSBTAP00000023658/1-587 Len: 592 Check: 2698 Weight: 1.00 // 1 50 ENSTTRP00000001936/1-550 MAQGHGATVS MVLLGLGLAL AIIVPIVVVS WHRVHCGPQA FAHAAVAADS bmy_15255T0/1-425 ---------- ---------- ---------- ---------- ---------- ENSP00000381340/1-587 MARGYGATVS LVLLGLGLAL AVIVLAVVLS RHQAPCGPQA FAHAAVAADS ENSBTAP00000023658/1-587 MAQGRGAAVS LVLLALVLAL AIIVPTVVVS RHRVHCGPQA FAHAAVAADS 51 100 ENSTTRP00000001936/1-550 KICSDIGRAI LQQHGSPMDA TIAALVCTGV VNPQSMGLGG GVIFTIYNAS bmy_15255T0/1-425 ----MFPRAI LQQHGSPVDA TIAALVCTGV VNPQSMGLGG GVIFTIYNAS ENSP00000381340/1-587 KVCSDIGRAI LQQQGSPVDA TIAALVCTSV VNPQSMGLGG GVIFTIYNVT ENSBTAP00000023658/1-587 KTCSDIGRAI LQQRGSPVDA AIAALVCTGV VNPQSMGLGG GVIFTIYNAT 101 150 ENSTTRP00000001936/1-550 TGKVEVINAR ETVPASHVPG LLDQCKQAQP LGTGAQWIGV PGELRGYAEA bmy_15255T0/1-425 TGKVEVINAR ETVPASHVPG LLDQCKQAQP LGTGAQWIGV PGELRGYAEA ENSP00000381340/1-587 TGKVEVINAR ETVPASHAPS LLDQCAQALP LGTGAQWIGV PGELRGYAEA ENSBTAP00000023658/1-587 TGKVEVINAR ETVPSNPIPA LLDQCEQAQP LGIGAQWIGV PGELRGYAEA 151 200 ENSTTRP00000001936/1-550 HHRHGHLPWA QLFRPTIALL RGGLRVPRIL SRFLHSSYLR PSLHASSLRQ bmy_15255T0/1-425 HRRHGRLPWA QLFGPTIALL RGGLRVPRVL SRFLHSSYLR PSLHASSLRQ ENSP00000381340/1-587 HRRHGRLPWA QLFQPTIALL RGGHVVAPVL SRFLHNSILR PSLQASTLRQ ENSBTAP00000023658/1-587 HRRHGRLPWA QLFMPTIALL RGGFRVPTIL SSFLHSPFLR PSLTESSLRQ 201 250 ENSTTRP00000001936/1-550 LFFNGTEPLS PHDPLPWPAL AATLETVAAE GADALYTGRL GQMLLEDVAK bmy_15255T0/1-425 LFFNGTEPLS PHDPLPWPAL AATLETVAAE GAEALYTGRL GQMLLEDVAK ENSP00000381340/1-587 LFFNGTEPLR PQDPLPWPAL ATTLETVATE GVEVFYTGRL GQMLVEDIAK ENSBTAP00000023658/1-587 LFFNGTEPLR SQDPLPWPML AATLETVATE GAEALYTGRL GQLLLEDIAK 251 300 ENSTTRP00000001936/1-550 EGSLLTPQDL ASFRPEVVDA LEMPLGDYTL YSPPPPAGGA ILSFVLNVLK bmy_15255T0/1-425 EGSXLTPQDL ASFRPEVVDA LEVPLGNYTL YSPPPPAGGA ILSFVLNVLK ENSP00000381340/1-587 EGSQLTLQDL AKFQPEVVDA LEVPLGDYTL YSPPPPAGGA ILSFILNVLR ENSBTAP00000023658/1-587 EGSRLTRQDL ASFRPEVVDA LAVPLGDYTL YSPPPPAGGA ILSFVLNVLK 301 350 ENSTTRP00000001936/1-550 GFNFSAESVA RPEGRVNLYH HLXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_15255T0/1-425 GFNFSAESVA RPEGRVNLYH HLVETLKFAR GQRWRLWDPR SHPEVQVRCP ENSP00000381340/1-587 GFNFSTESMA RPEGRVNVYH HLVETLKFAK GQRWRLGDPR SHPKLQNASR ENSBTAP00000023658/1-587 GFNFTAESVA GLEGRVNLYH HLVETLKFAG GQRWRLWDPR SHPEVQNASQ 351 400 ENSTTRP00000001936/1-550 XXXXXXXXXX XXXXXXXX-- --XXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_15255T0/1-425 ELVESPLPCP -RAQHEGRFR PTGAPSTDPE SLAGEPG--- GMCTRLVLEQ ENSP00000381340/1-587 DLLGETLAQL IRQQIDGR-- --GDHQLSHY SLAEAWGHGT GTSHVSVLGE ENSBTAP00000023658/1-587 DLLGEALAQH IRQQMDDR-- --GDHPLDHY SLAGAWTHRM GTAHVSVLGE 401 450 ENSTTRP00000001936/1-550 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_15255T0/1-425 DGLAVAQS-- ---------- --REG----- ---------- ---------- ENSP00000381340/1-587 DGSAVAATST INTPFGAMVY SPRTGIILNN ELLDLCERCP RGSGTTPSPA ENSBTAP00000023658/1-587 DGSAVAATST INTPFGAMVY SPRTGILLNN ELLDLCWRHS QGSRATPSPG 451 500 ENSTTRP00000001936/1-550 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_15255T0/1-425 ---------- GAVW-GLKGA REGQ------ ---------- VREGSGGAAS ENSP00000381340/1-587 VSGDRVGGAP GRCWPPVPGE RSPSSMVPSI LINKAQGSKL VIGGAGGELI ENSBTAP00000023658/1-587 EHRPPPPPAP GEVWPPVPGE RPPSSMVPSI LVSTARGSKL VIGGAGGELI 501 550 ENSTTRP00000001936/1-550 XXXXXXXXX- XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXEVKKGL bmy_15255T0/1-425 LTPLGDLLLC DPTWPLTDPV TCLPTP---- ---------- ---------- ENSP00000381340/1-587 ISAVAQAIM- SKLWLGFDLR AAIAAPILHV NSKGCVEYEP NFSQEVQRGL ENSBTAP00000023658/1-587 ISAVAQAIM- NKLWLGFDLQ AAIKAPILHV DSKGQVEFEP SFSQEVQKGL 551 600 ENSTTRP00000001936/1-550 QYRGQ----- ---------- ---------- ---------- -- bmy_15255T0/1-425 -----ERLPR P--------A GGGSGPAHPP ADRHPG---- -- ENSP00000381340/1-587 QDRGQNQTQR PFFLNVVQAV SQEGACVYAV SDLRKSGEAA GY ENSBTAP00000023658/1-587 QDRGQEQNKR PFFLNVVQAV SQDGACVHAA ADPRKGGEPS GY