KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:21:17 2014 Check: 00 .. Name: BACU006747/1-346 Len: 434 Check: 5246 Weight: 1.00 Name: ENSP00000339356/1-409 Len: 434 Check: 2931 Weight: 1.00 Name: ENSBTAP00000023659/1-417 Len: 434 Check: 9184 Weight: 1.00 Name: bmy_04325T0/1-374 Len: 434 Check: 4124 Weight: 1.00 Name: ENSTTRP00000014366/1-273 Len: 434 Check: 7534 Weight: 1.00 // 1 50 BACU006747/1-346 ----MLRSRE RESWSREPWV PIQVHLPASY LYSVKTGIKF TRLKE----- ENSP00000339356/1-409 MEESWEAAPG GQAGAELPME PVGSLVPTLE QPQVPAKVRQ PEGPESSPSP ENSBTAP00000023659/1-417 --LERGASKE DGAGAEFEMD SLGNQVPEME QPQHPAEERR PESPENSLSL bmy_04325T0/1-374 MEGARAASGE DHAGAEIPVE PLGSRVPELE QPQVPAEKRR PESPESSPSL ENSTTRP00000014366/1-273 ---------- ---------- ---------- ---------- ---------- 51 100 BACU006747/1-346 ----DEGLSS GLPWSRSRGP MIPHPQPSCS LPHHQ----- -----IQSGS ENSP00000339356/1-409 AGAVEKAAGA GLEPSSKKKP PSPRPGSPRV PPLSLGYG-- -----VCPEP ENSBTAP00000023659/1-417 APA-KEAAGA GQDLSGGKML PSPRPAPLRL LPPSLGYGAF RRQASTGPEP bmy_04325T0/1-374 -------AGA GQDLSGGKKL PSPGPAPLRL LPPSPGYSAF RRKESASPQP ENSTTRP00000014366/1-273 ---------- ---------- ---------- ---------- ---------- 101 150 BACU006747/1-346 PSSDNKDV-L PRSN------ ---------- --FGW----L TLLVWNVLVG ENSP00000339356/1-409 PSPGPALVKL PRNGEAPGA- --------EP APSAWAPMEL QVDVRVKPVG ENSBTAP00000023659/1-417 PSPDPAAAEQ PRDGETPETE LIPKAAPGEP APGAWTPVEL QVDVRVKSVG bmy_04325T0/1-374 PSPGPAAAEQ PRDGETPGAE QMLRAAPGEP ARGAWAPVEL QVDVRVKSVG ENSTTRP00000014366/1-273 ---------- ---------- ---------- ---------- -VDVRVKSVG 151 200 BACU006747/1-346 IRGLS---DP QVTEKISKTD KPDGLMFMHL QTTKEREVLV AQTDLNCLSG ENSP00000339356/1-409 AAGGSSTPSP RPSTRFLKVP VPESPAFSRH ADPAHQLLLR APSQGGTW-- ENSBTAP00000023659/1-417 TAGGSRAPSP APSTRFLTVP VPESPGFSRH ASPAHTLLRR TPSPGGTW-- bmy_04325T0/1-374 AAGGSRAPSP APSTRFLTVP VPESPAFSPH ASPAHPLLRR TPSPGGTW-- ENSTTRP00000014366/1-273 AAGSSCAPSP AP-TRFLTVP VPESPAISHH ASPAHP-LRL TPSPGGTW-- 201 250 BACU006747/1-346 QRNTGVGSES PLLVPKARSG VPVQCSMGPC AAQRQQPSW- ---------- ENSP00000339356/1-409 ------GRRS PLAAARTESG CDAEGRASPA EGSAGSPGSP TC-CRCKELG ENSBTAP00000023659/1-417 ------GRGT PPAAAGTERG LDVEGCASPA EGRAESSGSP MCRCRC---- bmy_04325T0/1-374 ------GRGT PLAAAQTERG LDAEGWAGPA EGRAESPGSP TCRCRC---- ENSTTRP00000014366/1-273 ------GRGT PLAAARTERD LDAEGWAGPA EGRAESPGSP TCRCRC---- 251 300 BACU006747/1-346 ---------- ---------- --------LP MYMRFLRWAL AVMAVLLAVS ENSP00000339356/1-409 LEKEDAALLP RAGLDGDEKL PRAVTLTGLP MYVKSLYWAL AFMAVLLAVS ENSBTAP00000023659/1-417 --REDSVLLP HAELDGDKKM SRIIKRVGLP MYMRSLRWAL AVMAVLLAVL bmy_04325T0/1-374 --KENAVL-- HAEMDGDKKL SRVIKLIGLP MYMRSLRWAL AVMAVLLAVS ENSTTRP00000014366/1-273 --KETPL--- HAEMDGDKKL SRVIKLVGLP MYMRSLRWAL AVMAVLLAVS 301 350 BACU006747/1-346 TVAIVALASK AGARCQPCPQ GWMWSMEHCY YLSAEAEAWE ASQAFCSAHH ENSP00000339356/1-409 GVVIVVLASR AGARCQQCPP GWVLSEEHCY YFSAEAQAWE ASQAFCSAYH ENSBTAP00000023659/1-417 AVAVVALASK TGIRCRPCPQ GWMWSEGQCY YLAAEAEAWE TSQAFCSAHQ bmy_04325T0/1-374 TVAIVALASK AGLPEQIPSH QVLLGGGPTR PPGLALDRWD PSATPAPEY- ENSTTRP00000014366/1-273 TVAIVALASR AXXXXXXXXX XXXXXXXXXX XXSA-AEAWE ASQAFCSAHH 351 400 BACU006747/1-346 ATLPLLRHTQ DFLSRYPVTK YSWVGARRGP QGWHWIDGTP LPPQLLPEED ENSP00000339356/1-409 ATLPLLSHTQ DFLGRYPVSR HSWVGAWRGP QGWHWIDEAP LPPQLLPEDG ENSBTAP00000023659/1-417 ATLPLLRHTQ DFLSRHPVTR YSWVGARRGP QGWHWIDGTP LPPQLLPEED bmy_04325T0/1-374 --LP------ -FLSPFP--- ---------- ---------- ----RLPEED ENSTTRP00000014366/1-273 ATLPLLRHTQ DFLSRYPVTK YSWVGARRGP QGWHWIDGTP LPLQLLPEED 401 450 BACU006747/1-346 QQGPDLDGGG LEGGKFVASD CASPRPWVCA KGAK ENSP00000339356/1-409 EDNLDINCGA LEEGTLVAAN CSTPRPWVCA KGTQ ENSBTAP00000023659/1-417 QDQPDLECGC LEGGKLVASD CASPRPWVCA KGTK bmy_04325T0/1-374 QQEPDLDCGG LEGGKFVASD CASPRPWVCA KGTK ENSTTRP00000014366/1-273 QQEPDLNCGG LEGGKFVASD CASPRPWVCA RGTK