KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:21:18 2014 Check: 00 .. Name: ENSBTAP00000023667/1-311 Len: 378 Check: 5594 Weight: 1.00 Name: ENSP00000371711/1-373 Len: 378 Check: 1468 Weight: 1.00 Name: ENSTTRP00000013439/1-374 Len: 378 Check: 2089 Weight: 1.00 Name: BACU009473/1-121 Len: 378 Check: 4105 Weight: 1.00 Name: bmy_03766T0/1-213 Len: 378 Check: 9334 Weight: 1.00 // 1 50 ENSBTAP00000023667/1-311 MPNDDAYSKP SAPSEAPQTP GAPPQGKAGG GGGGSGSDSG ASGTGAVSG- ENSP00000371711/1-373 MPNDEAFSKP STPSEAPHAP GVPPQGRAGG FGKASGALVG AASGSSAGGS ENSTTRP00000013439/1-374 MPNDDAYSKA SPPSEAPHAP GSPPQGKAGG FGKVAGALLG TTGGAGAGGS BACU009473/1-121 ---------- ---------M GSPLGG---- ---------- ---------- bmy_03766T0/1-213 ---------- ---------M GAAAS----- ---------- ---------- 51 100 ENSBTAP00000023667/1-311 ---------- -------KKS PRLPKCARCR NHGYASPLKG HKRFCMWRDC ENSP00000371711/1-373 SRGGGSGSGA SDLGAGSKKS PRLPKCARCR NHGYASPLKG HKRFCMWRDC ENSTTRP00000013439/1-374 GGSGSGASGM D--AAASKKS PRLPKCARCR NHGYASALKG HKRFCMWREC BACU009473/1-121 ---------- ---------S P-VKNSLRSL PAPYVPGQTG NQ----W--- bmy_03766T0/1-213 ---------- -------KKS PRLPKCARCR NHGYASPLKG HKRFCMWRDC 101 150 ENSBTAP00000023667/1-311 QCKKCNLIAE RQRVMAAQVA LRRQQAQEEE LGISHPIPLP STAELMVKRE ENSP00000371711/1-373 QCKKCNLIAE RQRVMAAQVA LRRQQAQEEE LGISHPIPLP SAAELLVKRE ENSTTRP00000013439/1-374 QCKKCNLIAE RQRVMAAQVA LRRQQAQEEE LGISHPIPLP SAAELLVKRE BACU009473/1-121 QMKN----SE SRHAVSSQYR MHSYYPPPSY LG-------Q SVSQIFTFED bmy_03766T0/1-213 QCKKCNLIAE RQRVMAAQVA LRRQQAQEEE LGISHPIPLP SAAELLVKRE 151 200 ENSBTAP00000023667/1-311 NSSGNPCLMI ESSSSSQPPP ASTPSTAAPG PEGRMVIQDI PAVTSRGHVE ENSP00000371711/1-373 NNGSNPCLMT ECSGTSQPPP ASVPT--TAA SEGRMVIQDI PAVTSRGHVE ENSTTRP00000013439/1-374 NDSSTPCLMT EGSSPSQTPP ASTPTPPAAA AEGRVAIQDI PAATSRGHVE BACU009473/1-121 G--------- ---------P SYS----EAK ASGRLLVTQP GFDVERGYLP bmy_03766T0/1-213 NDSSTPCLMT EGSSTLQPPP ASTPT--TAA PEGRVVIQDI PAVTSRGHVE 201 250 ENSBTAP00000023667/1-311 NTPDLV-SDS TYYSSFYQPS LFPYYNNLYN YPQYPMALAA DSSSGDVGNP ENSP00000371711/1-373 NTPDLV-SDS TYYSSFYQPS LFPYYNNLYN CPQYSMALAA DSASGEVGNP ENSTTRP00000013439/1-374 NTPDLV-SDS TYYSSFYQPS LFPYYNNLYN YPQYSMALAA DSPSGDMGSP BACU009473/1-121 STGSLVLSNS LPDSSCWKGC IVSF------ ---------- ---------- bmy_03766T0/1-213 NTPDLV-SDS TYYSSFYQPS LFPYYNNLYN YPQYSMALAT DSPSGDMGSP 251 300 ENSBTAP00000023667/1-311 LGGSPVKNSL RSLPAPYVPG Q-TGNQWQQM KNSENRHAVS SQYRMHSYYP ENSP00000371711/1-373 LGGSPVKNSL RGLPGPYVPG Q-TGNQW-QM KNMENRHAMS SQYRMHSYYP ENSTTRP00000013439/1-374 LGGSPVKNSL RSLPAPYMPG QATGNQW-QM KNSESLHAVS SQYRMHSYYP BACU009473/1-121 ---------- ---------- ---------- ---------- ---------- bmy_03766T0/1-213 LGGSPVKNSL RSLPAPYVPG Q-TGNQW-Q- ---------- ---------- 301 350 ENSBTAP00000023667/1-311 PPSYLGQSMS QIFTFEDSAS YSEAKASAFS P--------- ---------- ENSP00000371711/1-373 PPSYLGQSVP QFFTFEDAPS YPEARASVFS PPSSQDSGLV SLSSSSPISN ENSTTRP00000013439/1-374 PTSYLGQSMS QIFTFEDGLS YSEAKASVFS PPSSQDCGLV SLSTSSSVSN BACU009473/1-121 ---------- ---------- ---------- ---------- ---------- bmy_03766T0/1-213 ---------- ---------- ---------- ---------- ---------- 351 400 ENSBTAP00000023667/1-311 ---------- ---------- -------- ENSP00000371711/1-373 KSTKAVLECE PASEPSSFTV TPVIEEDE ENSTTRP00000013439/1-374 DSSKAVLECE SASEPSSFAV TPVIEDDE BACU009473/1-121 ---------- ---------- -------- bmy_03766T0/1-213 ---------- ---------- --------