KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:21:18 2014 Check: 00 ..
Name: ENSBTAP00000023667/1-311 Len: 378 Check: 5594 Weight: 1.00
Name: ENSP00000371711/1-373 Len: 378 Check: 1468 Weight: 1.00
Name: ENSTTRP00000013439/1-374 Len: 378 Check: 2089 Weight: 1.00
Name: BACU009473/1-121 Len: 378 Check: 4105 Weight: 1.00
Name: bmy_03766T0/1-213 Len: 378 Check: 9334 Weight: 1.00
//
1 50
ENSBTAP00000023667/1-311 MPNDDAYSKP SAPSEAPQTP GAPPQGKAGG GGGGSGSDSG ASGTGAVSG-
ENSP00000371711/1-373 MPNDEAFSKP STPSEAPHAP GVPPQGRAGG FGKASGALVG AASGSSAGGS
ENSTTRP00000013439/1-374 MPNDDAYSKA SPPSEAPHAP GSPPQGKAGG FGKVAGALLG TTGGAGAGGS
BACU009473/1-121 ---------- ---------M GSPLGG---- ---------- ----------
bmy_03766T0/1-213 ---------- ---------M GAAAS----- ---------- ----------
51 100
ENSBTAP00000023667/1-311 ---------- -------KKS PRLPKCARCR NHGYASPLKG HKRFCMWRDC
ENSP00000371711/1-373 SRGGGSGSGA SDLGAGSKKS PRLPKCARCR NHGYASPLKG HKRFCMWRDC
ENSTTRP00000013439/1-374 GGSGSGASGM D--AAASKKS PRLPKCARCR NHGYASALKG HKRFCMWREC
BACU009473/1-121 ---------- ---------S P-VKNSLRSL PAPYVPGQTG NQ----W---
bmy_03766T0/1-213 ---------- -------KKS PRLPKCARCR NHGYASPLKG HKRFCMWRDC
101 150
ENSBTAP00000023667/1-311 QCKKCNLIAE RQRVMAAQVA LRRQQAQEEE LGISHPIPLP STAELMVKRE
ENSP00000371711/1-373 QCKKCNLIAE RQRVMAAQVA LRRQQAQEEE LGISHPIPLP SAAELLVKRE
ENSTTRP00000013439/1-374 QCKKCNLIAE RQRVMAAQVA LRRQQAQEEE LGISHPIPLP SAAELLVKRE
BACU009473/1-121 QMKN----SE SRHAVSSQYR MHSYYPPPSY LG-------Q SVSQIFTFED
bmy_03766T0/1-213 QCKKCNLIAE RQRVMAAQVA LRRQQAQEEE LGISHPIPLP SAAELLVKRE
151 200
ENSBTAP00000023667/1-311 NSSGNPCLMI ESSSSSQPPP ASTPSTAAPG PEGRMVIQDI PAVTSRGHVE
ENSP00000371711/1-373 NNGSNPCLMT ECSGTSQPPP ASVPT--TAA SEGRMVIQDI PAVTSRGHVE
ENSTTRP00000013439/1-374 NDSSTPCLMT EGSSPSQTPP ASTPTPPAAA AEGRVAIQDI PAATSRGHVE
BACU009473/1-121 G--------- ---------P SYS----EAK ASGRLLVTQP GFDVERGYLP
bmy_03766T0/1-213 NDSSTPCLMT EGSSTLQPPP ASTPT--TAA PEGRVVIQDI PAVTSRGHVE
201 250
ENSBTAP00000023667/1-311 NTPDLV-SDS TYYSSFYQPS LFPYYNNLYN YPQYPMALAA DSSSGDVGNP
ENSP00000371711/1-373 NTPDLV-SDS TYYSSFYQPS LFPYYNNLYN CPQYSMALAA DSASGEVGNP
ENSTTRP00000013439/1-374 NTPDLV-SDS TYYSSFYQPS LFPYYNNLYN YPQYSMALAA DSPSGDMGSP
BACU009473/1-121 STGSLVLSNS LPDSSCWKGC IVSF------ ---------- ----------
bmy_03766T0/1-213 NTPDLV-SDS TYYSSFYQPS LFPYYNNLYN YPQYSMALAT DSPSGDMGSP
251 300
ENSBTAP00000023667/1-311 LGGSPVKNSL RSLPAPYVPG Q-TGNQWQQM KNSENRHAVS SQYRMHSYYP
ENSP00000371711/1-373 LGGSPVKNSL RGLPGPYVPG Q-TGNQW-QM KNMENRHAMS SQYRMHSYYP
ENSTTRP00000013439/1-374 LGGSPVKNSL RSLPAPYMPG QATGNQW-QM KNSESLHAVS SQYRMHSYYP
BACU009473/1-121 ---------- ---------- ---------- ---------- ----------
bmy_03766T0/1-213 LGGSPVKNSL RSLPAPYVPG Q-TGNQW-Q- ---------- ----------
301 350
ENSBTAP00000023667/1-311 PPSYLGQSMS QIFTFEDSAS YSEAKASAFS P--------- ----------
ENSP00000371711/1-373 PPSYLGQSVP QFFTFEDAPS YPEARASVFS PPSSQDSGLV SLSSSSPISN
ENSTTRP00000013439/1-374 PTSYLGQSMS QIFTFEDGLS YSEAKASVFS PPSSQDCGLV SLSTSSSVSN
BACU009473/1-121 ---------- ---------- ---------- ---------- ----------
bmy_03766T0/1-213 ---------- ---------- ---------- ---------- ----------
351 400
ENSBTAP00000023667/1-311 ---------- ---------- --------
ENSP00000371711/1-373 KSTKAVLECE PASEPSSFTV TPVIEEDE
ENSTTRP00000013439/1-374 DSSKAVLECE SASEPSSFAV TPVIEDDE
BACU009473/1-121 ---------- ---------- --------
bmy_03766T0/1-213 ---------- ---------- --------