KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:21:23 2014 Check: 00 .. Name: BACU001203/1-438 Len: 704 Check: 7679 Weight: 1.00 Name: bmy_01693T0/1-691 Len: 704 Check: 3467 Weight: 1.00 Name: ENSP00000339449/1-620 Len: 704 Check: 9700 Weight: 1.00 Name: ENSTTRP00000015758/1-593 Len: 704 Check: 3443 Weight: 1.00 Name: ENSBTAP00000023697/1-623 Len: 704 Check: 1855 Weight: 1.00 // 1 50 BACU001203/1-438 MMETQTSPKD EVAEVAELEL EAVIGFNGHV PTGLKCHPDQ EHLVYPLGCT bmy_01693T0/1-691 -METQTSPKD EVAEVAELEL EAVIGFNGHV PTGLKCHPDQ EHLVYPLGCT ENSP00000339449/1-620 -MDNKISPE- --AQVAELEL DAVIGFNGHV PTGLKCHPDQ EHMIYPLGCT ENSTTRP00000015758/1-593 ---------- ---------- --------HV PAGLKCHPDQ EHLVYPLGCT ENSBTAP00000023697/1-623 -METQASPKD EVAEAVELEL EAVIGFNGHV PTGLKCHPDQ EHLVYPLGCT 51 100 BACU001203/1-438 ILIQALNTQQ QNFLHGHGNN VSCVTISKSG VYIASGQVTF MGFKADIILW bmy_01693T0/1-691 ILVQALNTQE QNFLHGHGNN VSCVTISKSG VYIASGQVTF MGFKADIILW ENSP00000339449/1-620 VLIQAINTKE QNFLQGHGNN VSCLAISRSG EYIASGQVTF MGFKADIILW ENSTTRP00000015758/1-593 ILIQALNTQE QNFLHGHGNN VSCVTISKSG VYLASGQVTF MGFKADIILW ENSBTAP00000023697/1-623 ILIQAINTQE QNFLHGHGNN VSCVAISKSG LYIASGQVTF MGFKADIILW 101 150 BACU001203/1-438 HYKKRELIAR LSLHKGKIEA LAFSPNDLYL VSLGGPDDGS VVVWSIAKRD bmy_01693T0/1-691 HYKKRELIAR LSLHKGKIEA LAFSPNDLYL VSLGGPDDGS VVVWSIAKRD ENSP00000339449/1-620 DYKNRELLAR LSLHKGKIEA LAFSPNDLYL VSLGGPDDGS VVVWSIAKRD ENSTTRP00000015758/1-593 HYKKRELIAR LSLHKGKIEA LAFSPNDLYL VSLGGPDDGS VVVWSIA-RD ENSBTAP00000023697/1-623 DYKKRELMAR LSLHKGKIEA LAFSPNDMYL VSLGGPDDGS VVVWSIAKRE 151 200 BACU001203/1-438 AICGSPAAGL NVGNATTVIF SKCCDEMFVT AGN------- ---------- bmy_01693T0/1-691 AICGSPAAGL NVGNATTVIF SKCSDEMFVT AGKYASAVKV SRICKSLDLL ENSP00000339449/1-620 AICGSPAAGL NVGNATNVIF SRCRDEMFMT AGN------- ---------- ENSTTRP00000015758/1-593 AICGSPAAGP NVGNATTVIF SNCCDEMFVT AGN------- ---------- ENSBTAP00000023697/1-623 AICGSPAAGL NVGNATTVIF SKCRDEMFVT AGN------- ---------- 201 250 BACU001203/1-438 ---------- GTIRVWELDL PNRKIWPTEC QTGQMKRIVM SISMADDDSF bmy_01693T0/1-691 AQKTWSFQLG GTIRVWELDL PNRKIWPTEC QTGQMKRIVM SISMADDDSF ENSP00000339449/1-620 ---------- GTIRVWELDL PNRKIWPTEC QTGQLKRIVM SIGVDDDDSF ENSTTRP00000015758/1-593 ---------- GTIRVWELDL PNRKIWPTEC HTGQMKRIVM SISMAHDDSF ENSBTAP00000023697/1-623 ---------- GTIRVWELDL PNRKIWPTEC QTGQMKRIVM SISMANDDSF 251 300 BACU001203/1-438 FYVGTTTGDI LKMSPRTKLL ADTGPAKDRF SLGVSAIRCL K--------- bmy_01693T0/1-691 FYLGTTTGDI LKMSPRTKLL ADTGPAKDRF SL-VGAINVS RITLCASKAQ ENSP00000339449/1-620 FYLGTTTGDI LKMNPRTKLL TDVGPAKDKF SLGVSAIRCL K--------- ENSTTRP00000015758/1-593 FYLGTTTGDI LKMNPRTKLL ADTGPAKDRF SLGVSAIRCL K--------- ENSBTAP00000023697/1-623 FYLGTTTGDI LKMNPRTKLL ADTGPAKDKF SLGVSAICCL K--------- 301 350 BACU001203/1-438 ---------- ----MGGLLV GSGAGLLVFC KSPSYKPIKK IQLQGGITSI bmy_01693T0/1-691 IGYCDFLLLG LRKQLPGEVV EVRKGTRMLV QTAGGQ--RK IQLQGGITSI ENSP00000339449/1-620 ---------- ----MGGLLV GSGAGLLVFC KSPGYKPIKK IQLQGGITSI ENSTTRP00000015758/1-593 ---------- ----MGGLLV GSGAGLLVFC KSPSYKPIKK IQLQGGITSI ENSBTAP00000023697/1-623 ---------- ----MGGLLV GSGDGLLVFC KSPSYKPIKK IQLQGGITSI 351 400 BACU001203/1-438 TLRGEGHQFF VGTEESHIYR VNFTDFKETL ITTCHFEAVE DIVFPFGTAE bmy_01693T0/1-691 TLRGEGHQFF VGTEESHIYR VNFTDFKETL ITTCHFEAVE DIVFPFGTAE ENSP00000339449/1-620 TLRGEGHQFL VGTEESHIYR VSFTDFKETL IATCHFDAVE DIVFPFGTAE ENSTTRP00000015758/1-593 TLRGEGHQFF VGTEESHIYR LTFTDFKETL ITTCHFEAVE DIVFPSGTAE ENSBTAP00000023697/1-623 TLRGEGHQFF VGTEESHIYR VNFTNFKETL ITTCHFESVE DIVFPFGTAE 401 450 BACU001203/1-438 LFATCAKKDI RVWHTLSNRE LLRITVPNMT CRGIDFMRDG KSIIS----G bmy_01693T0/1-691 LFATCAKKDI RVWHTLSNRE LLRITVPNMT CHGIDFMRDG KSIISAWDDG ENSP00000339449/1-620 LFATCAKKDI RVWHTSSNRE LLRITVPNMT CHGIDFMRDG KSIISAWNDG ENSTTRP00000015758/1-593 LFATCAKKDI RVWHTLSNRE LLRITVPNMT CRGIDFMRDG KSIISAWDDG ENSBTAP00000023697/1-623 LFATCAKKDI RVWHTLTNRE LLRITVPNMT CHGIDFMRDG KSIISAWDDG 451 500 BACU001203/1-438 KV-------- ---------- ---------- -----AVPGF GFG-FRLW-- bmy_01693T0/1-691 KIRAFAPETG RLMYVINNAH RIGVTAIATT SDCKRVISGG GEGEVRVWQI ENSP00000339449/1-620 KIRAFAPETG RLMYVINNAH RIGVTAIATT SDCKRVISGG GEGEVRVWQI ENSTTRP00000015758/1-593 KIRAFAPETG RLMYVINNAH RIGVTAIATT SDCKRVISGG GEGEVRVWQI ENSBTAP00000023697/1-623 RIRAFAPETG RLMYVINNAH RIGVTAIATT SDCKRVISGG GEGEVRVWHI 501 550 BACU001203/1-438 ---------- ---------- ---------- ---------- LW-------- bmy_01693T0/1-691 GHQTQKLEEA LKEHKSSVSC IRVKKSNEQC VTASTDGTCI IWDLVRLRRN ENSP00000339449/1-620 GCQTQKLEEA LKEHKSSVSC IRVKRNNEEC VTASTDGTCI IWDLVRLRRN ENSTTRP00000015758/1-593 GHQTQKLEEA LKEHKSSVSC I--VKSNEEC VTASTDGTCI IMDLVRLRRN ENSBTAP00000023697/1-623 GHQTQKLEEA LKEHKSSVSC IRVKKSNEEC VTASTDGTCI IWDLVRLRRN 551 600 BACU001203/1-438 ----FSPFLS CQARHGDELE ---------- ---------- ---------- bmy_01693T0/1-691 QMILANTLFQ CVCYHPEEFQ ---------I AYWEVFDGSV IRELDGSLSG ENSP00000339449/1-620 QMILANTLFQ CVCYHPEEFQ IITSGTDRKI AYWEVFDGTV IRELEGSLSG ENSTTRP00000015758/1-593 QMILANTLFQ CVCYHPEEFQ IITSGTDRKI AYWEVFDGSV IRELEGSLSG ENSBTAP00000023697/1-623 QMILANTLFQ CVCYHPEEFQ IITSGTDRKI AYWEVFDGSV IRELDGSLSG 601 650 BACU001203/1-438 ---------- ---------- ---------- ---------- ---------Q bmy_01693T0/1-691 AVNGMDITVE GVHFVTGGND HLVKVWDYNE GEVTHVGVGH SGNITRIRIS ENSP00000339449/1-620 SINGMDITQE GVHFVTGGND HLVKVWDYNE GEVTHVGVGH SGNITRIRIS ENSTTRP00000015758/1-593 AVNGMDITVE GVHFVTGGND RLVKVWDYNE GEVTHVGVGH SGNITRVRIS ENSBTAP00000023697/1-623 AVNGMDITVE GVHFVTGGND HLVKVWDYNE GEVTHVGVGH SGNITRIRIS 651 700 BACU001203/1-438 PPNVHLLLI- ---------- ---------- ---------- ---------- bmy_01693T0/1-691 PGNXYIVSNA FYILELYIKT EMCSRIIRPD CNLLLPYLTY QGGYLINDDH ENSP00000339449/1-620 PGNQYIVSVS ---------- ---------- ---------- ADGAILRWKY ENSTTRP00000015758/1-593 PGNQYIISVS ---------- ---------- ---------- ADGAILRWKY ENSBTAP00000023697/1-623 PGNQYIVSVS ---------- ---------- ---------- ADGAILRWKY 701 750 BACU001203/1-438 ---- bmy_01693T0/1-691 LFIK ENSP00000339449/1-620 PYTS ENSTTRP00000015758/1-593 PFPS ENSBTAP00000023697/1-623 PFPS