KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:21:24 2014 Check: 00 .. Name: BACU018579/1-370 Len: 443 Check: 452 Weight: 1.00 Name: ENSTTRP00000001987/1-407 Len: 443 Check: 6072 Weight: 1.00 Name: ENSBTAP00000023705/1-407 Len: 443 Check: 8971 Weight: 1.00 Name: bmy_03912T0/1-359 Len: 443 Check: 4693 Weight: 1.00 Name: ENSP00000262031/1-407 Len: 443 Check: 7033 Weight: 1.00 // 1 50 BACU018579/1-370 ---------- ---------- ---------- ---------- ------MAPP ENSTTRP00000001987/1-407 ---------- ------MLLS VTSRPGISTF GYNKNNKKPY VSLSQPMAPP ENSBTAP00000023705/1-407 ---------- ------MLLS VTSRPGISTF GYNKNNKKPY VSLSQQMAPP bmy_03912T0/1-359 MPRFQHAVLL PNIKEKMLLS VTSRPGISTF GYNKNNKKPY VSLSQPMAPP ENSP00000262031/1-407 ---------- ------MLLS VTSRPGISTF GYNRNNKKPY VSLAQQMAPP 51 100 BACU018579/1-370 SPVNGTPNSS SGST-NDQLS EINFYIRALQ PSTTDQDLVK LCQS-GKFVS ENSTTRP00000001987/1-407 SPSNSTPNSS SGSTVNDQLS KTNLYIRGLQ PSTTDQDLVK LCQSYGKIVS ENSBTAP00000023705/1-407 SPSSSTPNSS SGSTAHDQLS KTNLYIRGLQ PSTTDQDLVK LCQSYGKIVS bmy_03912T0/1-359 SPSNSTPNSS SGSTVNDQLS KTNLYIRGLQ PSTTDQDLVK LCQSYGKIVS ENSP00000262031/1-407 SPSNSTPNSS SGSNGNDQLS KTNLYIRGLQ PGTTDQDLVK LCQPYGKIVS 101 150 BACU018579/1-370 TKAILGKTTN KCKG------ ---------- ----YGLVDF DSPSATQKAV ENSTTRP00000001987/1-407 TKAILDKTTN KCKG------ ---------- ----YGFVDF DSPSAAQKAV ENSBTAP00000023705/1-407 TKAILDKTTN KCKG------ ---------- ----YGFVDF DSPSAAQKAV bmy_03912T0/1-359 TKAILDKTTN KCKGKGTAVL GGGEQLFLVV ENSCYGFVDF DNPSAAQKAV ENSP00000262031/1-407 TKAILDKTTN KCKG------ ---------- ----YGFVDF DSPSAAQKAV 151 200 BACU018579/1-370 QTLKASGVQA QMAKQQEQKP TNLHISNLPF SMDEQELKGM LKSFGQVIST ENSTTRP00000001987/1-407 TALKASGVQA QMAKQQEQAP PKLYISNLTL STDEQEXXXX XXXXXXXXXT ENSBTAP00000023705/1-407 TALKASGVQA QMAKQQEQDP TNLYISNLPL SMDEQELEGM LKPFGQVIST bmy_03912T0/1-359 TALKASGVQA QMAKQQEQDP TNLYISNLPL SMDEQELEGM LKPFGQVIST ENSP00000262031/1-407 TALKASGVQA QMAKQQEQDP TNLYISNLPL SMDEQELEGM LKPFGQVIST 201 250 BACU018579/1-370 RILRDMSGTS RGVGFARME- TEKCKAIITH FNGKYIKTPP GVPAPSDPLL ENSTTRP00000001987/1-407 RILRDTSGTS RGVGFARMES TEKCEAIITH FNGKYIKTPP GVPAPSDPLL ENSBTAP00000023705/1-407 RILRDTSGTS RGVGFARMES TEKCEAIITH FNGKYIKTPP GVPAPSDPLL bmy_03912T0/1-359 RILRDTSGTS RGVGFARMES TEKCEAIITH FNGKYIKTPP GVPAPSDPLL ENSP00000262031/1-407 RILRDTSGTS RGVGFARMES TEKCEAIITH FNGKYIKTPP GVPAPSDPLL 251 300 BACU018579/1-370 CKFADGGPRK RQNQGNFMQN G-AWPRNADM RGMALTYDPT TALQDGFYSA ENSTTRP00000001987/1-407 CKFADGGPKK RQNQGKFMQN GRAWPRNGDM GGMALTYDPT TALQNGFYPA ENSBTAP00000023705/1-407 CKFADGGPKK RQNQGKFVQN GRAWPRNGDM GGMALTYDPS TALQNGFYPA bmy_03912T0/1-359 CKFADGGPKK RQNQGKF--- ---------- GGMALTYDPT TALQNGFYPA ENSP00000262031/1-407 CKFADGGPKK RQNQGKFVQN GRAWPRNADM GVMALTYDPT TALQNGFYPA 301 350 BACU018579/1-370 PYNITPNRML AQSALSPYLP SPVSSYQRVT QKSP-QVPNP SWMHHQSYLM ENSTTRP00000001987/1-407 PYNITPNRML AQSALSPYLP SPVSSYQRVT QTSPLQVPNL SWMHHQSYLM ENSBTAP00000023705/1-407 PYNLAPNRML TQSALSPYLP SPMTSYQRVT QTSPLQAPSP SWMHHQSYLM bmy_03912T0/1-359 PYNITPNRML AQSALSPYLP SPVSSYQ--- ---------- ---------- ENSP00000262031/1-407 PYNITPNRML AQSALSPYLS SPVSSYQRVT QTSPLQVPNP SWMHHHSYLM 351 400 BACU018579/1-370 QPSCSVLTPG -DHPISLQPA SMMGSLTQQL AHLSLSSKGT YMPTAAAMQG ENSTTRP00000001987/1-407 QPSGSVLTPG MDHPISLQPA SMMGPLTQQL GHLSLSSMGT YMPTAAAMQG ENSBTAP00000023705/1-407 QPSGSVLTPG MDHPISLQPA SMVGPLTQQL GHLSLSSTGT YVPTAAAMQG bmy_03912T0/1-359 ---GSVLTPG MDHPISLQPA SMMGPLTQQL GHLSLSSTGT ---------- ENSP00000262031/1-407 QPSGSVLTPG MDHPISLQPA SMMGPLTQQL GHLSLSSTGT YMPTAAAMQG 401 450 BACU018579/1-370 AYISQYTPVP -SSFSVEENN GQQNQVTVDA PSDHGVYSFQ FNK ENSTTRP00000001987/1-407 AYISQYTPVP SSSVSVEESG SQQNQVTVDA PSDHGVYSFQ FNK ENSBTAP00000023705/1-407 AYLSQYTPVP SSSVSVEESG SQQSQVPVDA PSEHGVYSFQ FNK bmy_03912T0/1-359 ---------- ---------- ---------- -VKQDIFLL- --- ENSP00000262031/1-407 AYISQYTPVP SSSVSVEESS GQQNQVAVDA PSEHGVYSFQ FNK