KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:21:27 2014 Check: 00 .. Name: bmy_11580T0/1-1140 Len: 1842 Check: 5391 Weight: 1.00 Name: ENSBTAP00000023716/1-1592 Len: 1842 Check: 3192 Weight: 1.00 Name: BACU010381/1-1655 Len: 1842 Check: 9203 Weight: 1.00 Name: ENSTTRP00000012023/1-1582 Len: 1842 Check: 8776 Weight: 1.00 // 1 50 bmy_11580T0/1-1140 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023716/1-1592 MGNAESQSVV HEFYGDKHAV LGRKHTSRSL RLSHKARRTR HASSGKVIHR BACU010381/1-1655 MGNAESQNVV HEFYGEKHAS LGRKHTSRSL RLSHKARRTR HASSGKVIHR ENSTTRP00000012023/1-1582 MGNAESQNVV HEFYGEKHAS LGRKHTSRSL RLSHKVRRTR HASSGKVIHR 51 100 bmy_11580T0/1-1140 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023716/1-1592 NSEVSTRSSS TPSIPQSLAE NGLEPFSQEG TLEDFGSPIW VDRVDVGLRP BACU010381/1-1655 TSEVTPRSSS TPSIPQSLAE NGLEPFSQEG TLEDFGSPIW VDRVDVGLRP ENSTTRP00000012023/1-1582 TSEVTTRSSS TPSIPQSLAE NGLEPFSQEG TLEDFGSPIW VDRVDMGLRP 101 150 bmy_11580T0/1-1140 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023716/1-1592 VSYTDSSVAP SVDSSIVLTA ASVQSMPDSE DSRLYGDDAT YLAEGGRRQR BACU010381/1-1655 VSYTDSSVSP SGGSSIVLAA ASVQSMPDSE ESRLYGHDAT YLAEGGRRQH ENSTTRP00000012023/1-1582 VSYTDSSVSP SVGSSIVLAA ASVQSMPDSE ESRLYGDDAT YLAEGGRRQH 151 200 bmy_11580T0/1-1140 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023716/1-1592 PYASNGPAFM ETASFKKKRS KSADIWREDS LEFSLSDLSQ EHLTSNEEIL BACU010381/1-1655 PYISNGPTFT ETASFKKKRS KSADIWREDS LEFSLSDLSQ EHLTSNEEIL ENSTTRP00000012023/1-1582 PYTSDGPTFT ETASFKKKRS KSADIWREDS LEFSLSDLSQ EHLTSNEEIL 201 250 bmy_11580T0/1-1140 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023716/1-1592 GSAEEKDCEE ARAMETRASP RQLSACQRAN SLGDLYA-QK NSGVTANGGP BACU010381/1-1655 GSAEEKDCEE TRGMEAPASP RQLSTCQRAN SLGDLYAPQK TSGVTADGGR ENSTTRP00000012023/1-1582 GSAEEKDCEE TRGMEAPASP RQLSTCQRAN SLGDLYAPQK TSGVTADGGR 251 300 bmy_11580T0/1-1140 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023716/1-1592 RSKLAGYCRN LVSDIPDLAN HKMPPAAAEE ALPYSNYNTL PCRKSHCLSE BACU010381/1-1655 RSKFAGYCRN LVSDIPDLAN HKMPPAAAEE ALPYSNYNTL PCRKSHCLSE ENSTTRP00000012023/1-1582 RGKFAGYCRN LVSDIPDLGN HKMPPAAAEE ALPYSNYNTL PCRKSHCLSE 301 350 bmy_11580T0/1-1140 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023716/1-1592 GATNPQISHS SSMQGRRAKT TQDVNAGEGS EFADSGIEGA TTDTDLLSRR BACU010381/1-1655 GATNPQMSHN NSMQGRRAKT TQDVNAGEGS EFADSGIEGA ATDTDLLSRR ENSTTRP00000012023/1-1582 GATNPQMSHN NSMQGRRAKT TQDVNAGEGS EFADSGIEGI DTD---LSRR 351 400 bmy_11580T0/1-1140 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023716/1-1592 SNATNSSYSP PTGRAFVGSD SGSSSTGDAA RQGVYENFRR ELEMSTTNSE BACU010381/1-1655 SNATNSSYSP PTGRAFVGSD SGSSSTGDAA RQGVYENFRR ELEMSTTNSE ENSTTRP00000012023/1-1582 SNA-NSSYSP PTGRA-VGSD SG-SSTGDAA RQGVYENFRR ELEMSTTNSE 401 450 bmy_11580T0/1-1140 ---------- --------MS P--------- ---------- ---------- ENSBTAP00000023716/1-1592 SLEEAGSAHS DEQSSGTLSS PGQSDILLTA AQGTVRKAGA LAVKNFLVHK BACU010381/1-1655 SLEEAGSAHS DEQSSGTLSS PGQSDILLTA AQGTVRKAGA LAVKNFLVHK ENSTTRP00000012023/1-1582 SLEEAGSAHS DEQSSGT-SS PGQSDILLTA AQGTVRKAGA LAVKNFLVHK 451 500 bmy_11580T0/1-1140 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023716/1-1592 KNKKVESATR RKWKHYWVSL KGCTLFFYEG DGRSGIDHNS VPKHAVWVEN BACU010381/1-1655 KNKKVESATR RKWKHYWVSL KGCTLFFYES DGRSGIDHNS IPKHAVWVEN ENSTTRP00000012023/1-1582 KNKKVESATR RKWKHYWVSL KGCTLFFYES DGRSGIDHNS IPKHAVWVEN 501 550 bmy_11580T0/1-1140 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023716/1-1592 SIVQAVPEHP KKDFVFCLSN SLGDAFLFQT TSQTELENWI TAIHSACAAA BACU010381/1-1655 SIVQAVPEHP KKDFVFCLSN SLGDAFLFQT TSQTELENWI TAIHSACAAA ENSTTRP00000012023/1-1582 SIVQAVPEHP KKDFVFCLSN SLGDAFLFQT TSQTELENWI TAIHSACAAA 551 600 bmy_11580T0/1-1140 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023716/1-1592 VARHHHKEDT LRLLKSEIKK LEQKIDMDEK MKKMGEMQLS SVTDSKKKKT BACU010381/1-1655 VARHHHKEDT LQLLKSEIKK LEQKIDMDEK MKKMGEMQLS SVTDSKKKKT ENSTTRP00000012023/1-1582 VARHHHKEDT LQLLKSEIKK LEQKIDMDEK MKKMGEMQLS SVTDSKKKKT 601 650 bmy_11580T0/1-1140 ---------- ---------- -----LAVLQ ---------- ---------- ENSBTAP00000023716/1-1592 ILDQIFVWEQ NLEQFQMDLF RYRCYLASLQ GGELPNPKRL LAFASRPTKV BACU010381/1-1655 ILDQIFVWEQ NLEQFQMDLF RYRCYLASLQ GGELPNPKRL LAFASRPTKV ENSTTRP00000012023/1-1582 ILDQIFVWEQ NLEQFQMDLF RYRCYLASLQ GGELPNPKRL LAFASRPTKV 651 700 bmy_11580T0/1-1140 ---------- ------VAAR TGETGVRRRT QAMSRSASKR RSRFSSLWGL ENSBTAP00000023716/1-1592 AMGRLGIFSV SSFHALVAAR TGETGVRRRT QAMSRSASKR RSRFSSLWGL BACU010381/1-1655 AMGRLGIFSV SSFHALVAAR TGETGVRRRT QAMSRSASKR RSRFSSLWGL ENSTTRP00000012023/1-1582 AMGRLGIFSV SSFHALVAAR TGETGVRRRT QAMSRSASKR RSRFSSLWGL 701 750 bmy_11580T0/1-1140 DTTSKKKQGR PSINQVFGEG TEAVKKSLEG IFDDTVPDGK REKEMVLPSV ENSBTAP00000023716/1-1592 DTTSKKKQGR PSINQVFGEG TEAVKKSLEG IFDDTVPDGK REKEMVLPAV BACU010381/1-1655 DTTSKKKQGR PSINQVFGEG TEAVKKSLQG IFDDTVPDGK REKEMVLPSV ENSTTRP00000012023/1-1582 DTTSKKKQGR PSINQVFGEG TEAVKKSLEG IFDDTVPDGK REKEMVLPSV 751 800 bmy_11580T0/1-1140 HQHSPDCDIW VHEYFTPSWF CLPNNKPVLT VVRPGDTARD ALELICKRQM ENSBTAP00000023716/1-1592 HQHNPDCDIW VHEYFTPSWF CLPNNQPALT VVRPGDTARD TLELICK--- BACU010381/1-1655 HQHNPDCDIW VHEYFTPSWF CLPNNKPVLT VVRPGDTARD ALELICK--- ENSTTRP00000012023/1-1582 HQHNPDCDIW VHEYFTPSWF CLPNNKPVLT AVRPGDTARD TLELICK--- 801 850 bmy_11580T0/1-1140 IELTSSVFTL RCRNFLIFFK DSWMNWIALT ILFPILSDPH HFTSVCHLPS ENSBTAP00000023716/1-1592 ---------- ---------- ---------- ---------- ---------- BACU010381/1-1655 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012023/1-1582 ---------- ---------- ---------- ---------- ---------- 851 900 bmy_11580T0/1-1140 EHQSSSGIAH RLDHSAHYLR LKFLIENKMQ HYVPKPEEDI YELLYKEIEI ENSBTAP00000023716/1-1592 --------AH KLDHSAHYLR LKFLIENKMQ YYVPKPEEDI YELLYKEIEI BACU010381/1-1655 --------AH RLDHSAHYLR LKFLIENKMQ HYVPKPEEDI YELLYKEIEI ENSTTRP00000012023/1-1582 --------AH RLDHSAHYLR LKFLIENKMQ HYVPKPEEDI YELLYKEIEI 901 950 bmy_11580T0/1-1140 CPKVTQNIQI AKSDTAGDNY GFSLSSVEED GVRRLYVNSV KETGLASKKG ENSBTAP00000023716/1-1592 CPKVTQNIQI EKSDTAGDNY GFSLSSVEED GVRRLYVNSV KETGLASKK- BACU010381/1-1655 CPKVTQNIQI EKSDTAGDNY GFSLSSVEED GVRRLYVNSV KETGLASKK- ENSTTRP00000012023/1-1582 CPKVTQNIQI EKSDTAGDNY GFSLSSVEED GVRRLYVNSV KETGLASKK- 951 1000 bmy_11580T0/1-1140 TLVLDKNKRS SAATPLPHIA LFSADARVMP TCPPGWQTIP SIRPAEGCVG ENSBTAP00000023716/1-1592 ---------- ---------- ---------- ---------- ---------- BACU010381/1-1655 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012023/1-1582 ---------- ---------- ---------- ---------- ---------- 1001 1050 bmy_11580T0/1-1140 RGLKAGDEIL EINNRAAGTL NASVLKDFLA QLSLGLLVRT YPELEGGAEL ENSBTAP00000023716/1-1592 -GLKAGDEIL EINKRAAGTL NSSVLRDFLT QPSLGLLVRT CPELEGGAEL BACU010381/1-1655 -GLKAGDEIL EINSRAAGTL NASVLKDFLA QLSLGLLVRT YPELEGGAEL ENSTTRP00000012023/1-1582 -GLKAGDEIL EINNRAAGTL NASVLKDFLA QLSLGLLVRT YPELEGEAEL 1051 1100 bmy_11580T0/1-1140 LGSPPLRLDG PADLSENPLA FLTSNTGMAV HRAAPWRLPM RLAYSEYSCF ENSBTAP00000023716/1-1592 LENPPHRLDG PADLGESPLA FLSSDTG--- ---------- ---------- BACU010381/1-1655 LGSPPLRLDG PADLSENPLA FLTSNTGKDF FPS------- ---------- ENSTTRP00000012023/1-1582 LGSPPLRLDG PADLSENPLA FLTSNT---- ---------- ---------- 1101 1150 bmy_11580T0/1-1140 SKSLLKLGLG SKILQNQVCL VKLGNQLGSR IQHESKVTVY RLSLMGLNGA ENSBTAP00000023716/1-1592 ---------- ---------- ---------- ---------- ---------- BACU010381/1-1655 ---------- ---------- ---------- -------SIK FKTLMGLNGA ENSTTRP00000012023/1-1582 ---------- ---------- ---------- ---------- ---------- 1151 1200 bmy_11580T0/1-1140 LVNASHPSKS KINQNVSFHS CVCTASNLIV VYPANGYLAH GHSLCSQQGS ENSBTAP00000023716/1-1592 ---------- ---------- ---------- ---------- GYSLSSRNNA BACU010381/1-1655 LVNASHPSKS KINQNVSLHS CVCTAPNLIV VYPAN----- GHSLCSQQGS ENSTTRP00000012023/1-1582 ---------- ---------- ---------- ---------- GHSLCSQQGS 1201 1250 bmy_11580T0/1-1140 SAETAPEETE GPDLESSDET DHSSKSTEQV AAFCRSLHEM NPSDPSPSPQ ENSBTAP00000023716/1-1592 ASEAAPEEVE GPDLESSDDT DHSSKSTEQV AAFCRSLHEM KPSDPSPSPQ BACU010381/1-1655 SVETAPEETE GPDLESSDET DHSSKSTEQV AAFCRSLHEM NPSDPSPSPQ ENSTTRP00000012023/1-1582 S-ESAPEETE GPDLESSDET DHSSKSTEQV AAFCRSLHEM NSSDPSPSPQ 1251 1300 bmy_11580T0/1-1140 DSAGPQLATM RQLTDADKLR KVICELLETE RTYVKDLNCL MERYLKPLQK ENSBTAP00000023716/1-1592 DSTGPQLAAM RQLTDADKLR KVICELLETE RTYVKDLNCL MERYLKPLQK BACU010381/1-1655 DSAGPQLATM RQLTDADKLR KVICELLETE RTYVKDLNCL MERYLKPLQK ENSTTRP00000012023/1-1582 DSAGPQLATM RQLTDADKLR KVICELLETE RTYVKDLNCL MERYLKPLQK 1301 1350 bmy_11580T0/1-1140 ETFLTQDELD VLFGNLTEMV EFQVEFLKTL EDGVRLVPDL EKLEKVDQFK ENSBTAP00000023716/1-1592 ETFLTQDELD VLFGNLTEMV EFQVEFLKTL EDGVRLVPDL EKLEKVDQFK BACU010381/1-1655 ETFLTQDELD VLFGNLTEMV EFQVEFLKTL EDGVRLVPDL EKLEKVDQFK ENSTTRP00000012023/1-1582 ETFLTQDELD VLFGNLTEMV EFQVEFLKTL EDGVRLVPDL EKLEKVDQFK 1351 1400 bmy_11580T0/1-1140 KVLFSLGGSF LYYADRFKLY SAFCASHTKV PKVLVKAKMD VAFKAFLDAQ ENSBTAP00000023716/1-1592 KVLFSLGGSF LYYADRFKLY SAFCASHTKV PKVLVKAKTD AAFKAFLDAQ BACU010381/1-1655 KVLFSLGGSF LYYADRFKLY SAFCASHTKV PKVLVKAKMD AAFKAFLDAQ ENSTTRP00000012023/1-1582 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXKMD AAFKAFLDAQ 1401 1450 bmy_11580T0/1-1140 NPKQQHSSTL ESYLIKPIQR ILKYPLLLKE LFALTDAESE EHYHLDLAIK ENSBTAP00000023716/1-1592 NPKQQHSSTL ESYLIKPIQR ILKYPLLLKE LFALTDAESE EHYHLDVAIK BACU010381/1-1655 NPKQQHSSTL ESYLIKPIQR ILKYPLLLKE LFALTDAESE EHYHLDLAIK ENSTTRP00000012023/1-1582 NPKQQHSSTL ESYLIKPIQR ILKYPLLLKE LFALTDAESE EHYHLDLAIK 1451 1500 bmy_11580T0/1-1140 TMNKVASHIN EMQKIHEEFG AVFDQLIAEQ TGEKKEVADL SMGDLLLHTT ENSBTAP00000023716/1-1592 TMNKVASHIN EMQKIHEEFG AVFDQLIAEQ TGEKKEVADL SMGDLLLHTT BACU010381/1-1655 TMNKVASHIN EMQKIHEEFG AVFDQLIAEQ TGEKKEVADL SMGDLLLHTT ENSTTRP00000012023/1-1582 TMNKVASHIN EMQKIHEEFG AVFDQLIAEQ TGEKKEVADL SMGDLLLHTT 1501 1550 bmy_11580T0/1-1140 VIWPNPPASL GKWKKEPELA AFV----FKT AVV--LVYKD GSKQKRKLVG ENSBTAP00000023716/1-1592 VIWPNPPASL GKWKKEPELA AFV----FKT AVV--LVYKD GTKQKKKLVG BACU010381/1-1655 VIWPNPPASL GKWKKEPELA AFVELPPFER DLLSWTLISE GF-----MVG ENSTTRP00000012023/1-1582 VIWPNPPASL GKWKKEPELA AFV-----KT AV---LVYKD GSKQKRKLVG 1551 1600 bmy_11580T0/1-1140 SHRLSIYEDW DPFRFRHMIP TEALQVRALA SADAEANAVC EIVHVKSESE ENSBTAP00000023716/1-1592 SHRLSIYEDW DPFRFRHMIP TEALQVRALA SADAEANAVC EIVHVKSESE BACU010381/1-1655 SHRLSIYEDW DPFRFRHMIP TEALQVRALA SADTEANAVC EIVHVKSESE ENSTTRP00000012023/1-1582 SHRLSIYEDW DPFRFRHMIP TEALQVRALA SADAEANAVC EIVHVKSESE 1601 1650 bmy_11580T0/1-1140 GRPERVFHLC C-------SS PESRKDFLKA VHSILRDKHR RQLLKTESLP ENSBTAP00000023716/1-1592 GRPERVFHLC C-------SS PESRKDFLKA VHSILRDKHR RQLLKTESLP BACU010381/1-1655 GRPERVFHLC CRCKSSFHSS PESRKDFLKA VHSILRDKHR RQLLKTESLP ENSTTRP00000012023/1-1582 GRPERVFHLC C-------SS PESRKEFLKA VHSILRDKHR RQLLKTESLP 1651 1700 bmy_11580T0/1-1140 SSQQYVPFGG KRLCALKGAR PAMSRAASVF IWGSLELLLE KRNLEFKWSQ ENSBTAP00000023716/1-1592 SSQQYVPFGG KRLCALKGAR PAMSRAVSA- --PSKSLGRR RRRL----AR BACU010381/1-1655 SSQQYVPFGG KRLCALKGAR PAMSRAVSA- --PSKSLGRR RRRL----AR ENSTTRP00000012023/1-1582 SSQQYVPFGG KRLCALKGAR PAMNRAVSA- --PSKSLGRR RRRL----AR 1701 1750 bmy_11580T0/1-1140 ERLLI---SV LKNFPPVLNC VEEAGKSFIT LLLKRLTIVR IFKLDDLKMV ENSBTAP00000023716/1-1592 NRFTIDSDAI SASSPEKDPQ QPPSGGDTDR WVEEQFDLAQ YEEQDDIKET BACU010381/1-1655 NRFTIDSDAI SASSPEKESQ QPPGGGDTDR WVEEQFDLAR YEEQDDIKET ENSTTRP00000012023/1-1582 NRFTIDSDAI SASSPEKESQ QHPGGGDTDR WVEEQFDLTQ YEEHDDVKET 1751 1800 bmy_11580T0/1-1140 LEWMIEHSGM MMEAQGSETE G--------- --GQSGSQFR PLSSSLTLYL ENSBTAP00000023716/1-1592 -DILSDDDEF CESAKGAAAD RDLQERLQAA SITQRERGRK PLDSHAS-RM BACU010381/1-1655 -DILSDDDEF CESAKGATAD RDLRERLQAA CISQREGGQK PLHSHAS-RM ENSTTRP00000012023/1-1582 -DILSDDDEF CESVKGAAAD RDLQERLQAA SISQRERCQK ALDSHAS-RM 1801 1850 bmy_11580T0/1-1140 LYLKPRLHLA VIMNSHLTSS STEAV----- ---------- -- ENSBTAP00000023716/1-1592 MQLKKQTALS GI-NGGPEST SEEVIWVRRE DFAPSCKLNT EI BACU010381/1-1655 TQLKKQAALS GI-NGGPEST SEEVIWVRRE DFAPSRKLNT EI ENSTTRP00000012023/1-1582 TQLKKQAALS GV-NGGPEST SDEVIWVRRE DFAPSRKLNT EI