KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:21:27 2014 Check: 00 .. Name: ENSP00000357005/1-299 Len: 676 Check: 8642 Weight: 1.00 Name: BACU003865/1-671 Len: 676 Check: 6855 Weight: 1.00 Name: ENSBTAP00000023725/1-298 Len: 676 Check: 6744 Weight: 1.00 Name: bmy_06330T0/1-311 Len: 676 Check: 21 Weight: 1.00 Name: ENSTTRP00000008651/1-298 Len: 676 Check: 3687 Weight: 1.00 // 1 50 ENSP00000357005/1-299 MGTKAQVERK LLCLFILAIL LCSLALGSVT VHSSE----- -----PEVR- BACU003865/1-671 -----MKCHL ESCSWTRRNL IRLLGVTEGK IFLNKEITLA GNILFPLIKQ ENSBTAP00000023725/1-298 MGTKAKVGST ELLLFT-SMI LCSLALGRGA VQTYE----- -----PVVR- bmy_06330T0/1-311 ---------- ---------- --SLALGRGA VQTSE----- -----PVVK- ENSTTRP00000008651/1-298 LGTKAKVGRK QLLLFT-SMI LCSLALGRGA VQTSE----- -----PVVR- 51 100 ENSP00000357005/1-299 IPENNPVKLS CAYSGFSSPR VEWKFDQGDT TRLVCYNNKI TASYEDRVTF BACU003865/1-671 VLACNSAKLS CSYSGFSSPR VEWKFAHGDI TSLVCYSNKI TASYEDRVTF ENSBTAP00000023725/1-298 VPENNPAKLS CSYSGFSSPR VEWKFTHGDI RGLVCYNNKI TASYENRVTF bmy_06330T0/1-311 VAENKPAKLS CSYSGFSSPR VEWKFAHGDI TSLVCYNNKI TASYEDRVTF ENSTTRP00000008651/1-298 VAENKPAKLS CSYSGFSSPR VEWKFAHGDI TSLVCYNNKI TASYEDRVTF 101 150 ENSP00000357005/1-299 LPTGITFKSV TREDTGTYTC MVSEEGGNSY GEVKVKLIVL VPPSKPTVNI BACU003865/1-671 SDSGITFHSV TRKDTGTYTC MVSDEGGNTY GEVTVQLIVL VPPSKPTISV ENSBTAP00000023725/1-298 SDTGITFHSV TRKDTGMYTC MVSDEGGNTY GEVTVQLIVL VPPSKPTINV bmy_06330T0/1-311 SDSGITFHSV TRKDTGTYTC MVSDEGGNTY GEVTVQLIVL VPPSKPTINV ENSTTRP00000008651/1-298 SDSGITFHSV TRKDTGMYTC MVSDEGGNTY GEVTVELIVL VPPSKPTISV 151 200 ENSP00000357005/1-299 PSSATIGNRA VLTCSEQDGS PPSEYTWFKD GIVMPTNPKS TRAFSNSSYV BACU003865/1-671 PSSATIGTRA VLTCSEKDGS PPSEYFWFKN GLLMPTEPKN NRAFSNSSYS ENSBTAP00000023725/1-298 PSSVTIGTRA VLTCSERDGS PPSEYKWFKD GVEMPLEPKS NRAFSNSSYT bmy_06330T0/1-311 PSSATIGTRA VLTCSEKDGS PPSEYFWFKN GLLMPTEPKS NRAFSNSSYS ENSTTRP00000008651/1-298 PASATIGTRA VLTCSETDGS PPSEYFWFKD GVLMPTEPKN NRAFSNSSYT 201 250 ENSP00000357005/1-299 LNPTTGELVF DPLSASDTGE YSCEARNGYG TPMTSNAVRM EAVERNVGVI BACU003865/1-671 LNHKTGELIF DPMSASDAGD YTCEAQNGYG SPMKSDTVHM DAAELNVGGI ENSBTAP00000023725/1-298 LNQKTGELIF DPVSASDTGD FTCQAQNGYA SPVKSDTVHM DAVELNVGGI bmy_06330T0/1-311 LNHKTGELIF DPMSASDAGD YTCEAQNGYG SPMKSDTVHM DAAELNVGGI ENSTTRP00000008651/1-298 LNHKTGELIF DPVSASDAGD YTCEAQNGFG PPMKSDTVHM DAVELNVGGI 251 300 ENSP00000357005/1-299 VAAVLVTLIL LGILVFGIWF AYSRGHFDRT KKGTSSKKVI YSQPSARSE- BACU003865/1-671 VAAVLVTLIL LGVLIFGIWF AYNRGYFDRA KKGTSSKKVI YSQPTARRDA ENSBTAP00000023725/1-298 VAAVFVTLIL LGALIFGIWF AYSRGYFDRA KKGTSNKKVI YSQPNARSD- bmy_06330T0/1-311 VAAVLVTLIL LGVLIFGIWF AYNRGYFDSK ---TSNKKVI YSQPTARRDV ENSTTRP00000008651/1-298 VAAVLVTLIL LGVLIFGIWF AYNRGYFDRA KKGTSNKKVI YSQPTARRD- 301 350 ENSP00000357005/1-299 ---------- ---------- ---------- ---------- ---------- BACU003865/1-671 METVEQGDRG LILPPAVPLF GHQRAECRSI KEIKESCGEA SDGLYFLHTE ENSBTAP00000023725/1-298 ---------- ---------- ---------- ---------- ---------- bmy_06330T0/1-311 R--------- ---------- ---------- -------GIQ TDLIILGVTQ ENSTTRP00000008651/1-298 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000357005/1-299 ---------- ---GE----- ---------- ---------- ---------- BACU003865/1-671 NGVIYQTFCD MTSGDGSWTL VACVHENHMP GKCTVGDRWS SQQGSRADCP ENSBTAP00000023725/1-298 ---------- ---GE----- ---------- ---------- ---------- bmy_06330T0/1-311 VQLISRPLCL PYTGA----- ---------- ---------- ---------- ENSTTRP00000008651/1-298 ---------- ---GE----- ---------- ---------- ---------- 401 450 ENSP00000357005/1-299 ---------- ---------- ---------- ---------- ---------- BACU003865/1-671 EGDGNWANTF GSAEAATSDT SVRVALQNPG YYDIQAQDLG TWHVPNKSSL ENSBTAP00000023725/1-298 ---------- ---------- ---------- ---------- ---------- bmy_06330T0/1-311 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008651/1-298 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000357005/1-299 --FK------ ---QTSSF-- ----LV---- ---------- ---------- BACU003865/1-671 QHWRNSSLLR YRTNTSFFPN LGHNLFGLYQ KYPVKYGSGS CQTDNGPAIP ENSBTAP00000023725/1-298 --FR------ ---QTSSF-- ----LV---- ---------- ---------- bmy_06330T0/1-311 --TRLWPLMS VVSRDALF-- ----VF---- ---------- ---------- ENSTTRP00000008651/1-298 --FR------ ---QTSSF-- ----LV---- ---------- ---------- 501 550 ENSP00000357005/1-299 ---------- ---------- ---------- ---------- ---------- BACU003865/1-671 VVYDFGDADF GDAEKTASYY SPIGQHGLYF LHTENGVVYQ TFCAMTSGGG ENSBTAP00000023725/1-298 ---------- ---------- ---------- ---------- ---------- bmy_06330T0/1-311 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008651/1-298 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000357005/1-299 ---------- ---------- ---------- ---------- ---------- BACU003865/1-671 DWTLLTCVHE NHMSRKCTVG GHWSSQQGVR ADYPEGDGNW TIYHPFGSAE ENSBTAP00000023725/1-298 ---------- ---------- ---------- ---------- ---------- bmy_06330T0/1-311 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008651/1-298 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000357005/1-299 ---------- ---------- ---------- ---------- ---------- BACU003865/1-671 AATSDDYKTF PMKRGGQCST DNGLAIPVAC DFGDSQKMAS YDSPLGQRLH ENSBTAP00000023725/1-298 ---------- ---------- ---------- ---------- ---------- bmy_06330T0/1-311 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008651/1-298 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000357005/1-299 ---------- ---------- ------ BACU003865/1-671 CGFVQFRNLI MREQVRALCA GVRVTR ENSBTAP00000023725/1-298 ---------- ---------- ------ bmy_06330T0/1-311 ---------- ---------- ------ ENSTTRP00000008651/1-298 ---------- ---------- ------