KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:21:29 2014 Check: 00 .. Name: ENSP00000360944/1-1288 Len: 1295 Check: 8451 Weight: 1.00 Name: ENSBTAP00000023728/1-1288 Len: 1295 Check: 1685 Weight: 1.00 Name: ENSTTRP00000000785/1-1276 Len: 1295 Check: 402 Weight: 1.00 Name: bmy_12717T0/1-833 Len: 1295 Check: 527 Weight: 1.00 Name: BACU000297/1-391 Len: 1295 Check: 6643 Weight: 1.00 // 1 50 ENSP00000360944/1-1288 ---MEPIYPF ARPQMNTRFP SSRMVPFHFP PSKCALWNPT PTGDFIYLHL ENSBTAP00000023728/1-1288 ---MESTYPL AGPQINTRFS SSRMVPFYFP PSKCALWNPV PIGDFIYLHL ENSTTRP00000000785/1-1276 ----METYPL TGTQMNSRFS SSRMVPFYFP PSKCALWNPM PIGDYIYLRL bmy_12717T0/1-833 MKPGTEVAEM ERQNLHRGRG RKEEDPEHVK LSKS------ -FSNYHGAYV BACU000297/1-391 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000360944/1-1288 SYYRNPKLVV TEKTIRLAYR HAKQNKKNSS CFLLGSLTAD EDEEGVTLTV ENSBTAP00000023728/1-1288 RYYRNPRLVV TEKTIRLACR HAKQNKNNLP CFLLGSLTVD EDEESMTLTV ENSTTRP00000000785/1-1276 NYHRNPKLVV TEKTIRLACR HAKQNKENLP CFLLGSLTVD EDEESVTLTI bmy_12717T0/1-833 SSHRDP---- ---------- ------DEYQ TLQFGQVGKY IYEESVTLTI BACU000297/1-391 ---------- ---------- ---------M CFQSG----- ---------- 101 150 ENSP00000360944/1-1288 DRFDPGREVP ECLEITPTAS LPGDFLIPCK VHTQELCSRE MIVHSVDDFS ENSBTAP00000023728/1-1288 DRFDPGREVP ELLERIPTAS LPGDFVIPCK IHTQGLCSRE IITHNADDFN ENSTTRP00000000785/1-1276 DRFDPGREVP ECLERTPTAS LPGDFVIPCT IHTQGLC-RE MXXHT----- bmy_12717T0/1-833 DRFDPGREVP ECLERTPTAS LPGDFVIPCK IHTQGLCSRE IIVHNADDFN BACU000297/1-391 ---------- ------PTEG ATNSSVTSGE PKTEQV---- ---------- 151 200 ENSP00000360944/1-1288 SALKALQCHI CSKDSLDCGK LLSLRVHITS RESLDSVEFD LHWAAVTLAN ENSBTAP00000023728/1-1288 SSFKALQHHV CSKEPLDCGK LLALRAHITS KESLDTVDFD LDWAAVTLAN ENSTTRP00000000785/1-1276 ----ALQHHV CSKDSLDCGK LLSLRAHITS RESLDTVDFD LDWAAVTLAN bmy_12717T0/1-833 SAFKALQHHV CSKDSLDCGK LLSLRAHITS RESLDTVDFD LDWAAVTLAN BACU000297/1-391 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000360944/1-1288 NFKCTPVKPI PIIPTALARN LSSNLNISQV QGTYKYGYLT MDETRKLLLL ENSBTAP00000023728/1-1288 TFKCTPVKPI SIIPTALARN LSSNLNISQV QGTYKYGYLT MDETRKLLLL ENSTTRP00000000785/1-1276 TFKCTPVKPI PIIPTALARN LSSNLNISQV QGTYKYGYLT MDETRKLLLL bmy_12717T0/1-833 TFKCTPVKPI PIIPTALARN LSSNLNISQV QGTYKYGYLT MDETRKLLLL BACU000297/1-391 ------MQPL P--------- ---------- ---------- ---------- 251 300 ENSP00000360944/1-1288 LESDPKVYSL PLVGIWLSGI THIYSPQVWA CCLRYIFNSS VQERVFSESG ENSBTAP00000023728/1-1288 LESDPKVYSL PLVGIWLSGI IHIYSPQVWA CCLRYMFSSS IQERVFSESG ENSTTRP00000000785/1-1276 LETDPKIYSL PLVGIWLSGI IHIYSPQVWA CCLRYMFSSS IQERVFSESG bmy_12717T0/1-833 LESDPKVYSL PLVGM----- ---------- ---------- ----VFSESG BACU000297/1-391 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000360944/1-1288 NFIIVLYSMT HKEPEFYECF PCDGKIPDFR FQLLTSKETL HLFKNVEPPD ENSBTAP00000023728/1-1288 NFIIVLYSVT HKDPEFYECL PCDGRLPDLR FQLLTSKETL RLFKNVEPSD ENSTTRP00000000785/1-1276 NFIIVLYSVT HKDPEFYECL PCDGRLPDLR FQLLTSKETL HLFKNVEPSD bmy_12717T0/1-833 NFIIVLYSVT HKDPEFYECL PCDGRSPDLR FQLLTSKETL HLFKNVEPSD BACU000297/1-391 ---------- HQ-------- ---------- ---------- -------PSD 351 400 ENSP00000360944/1-1288 KNPIRCELSA ESQNAETEFF SKASKNFSIK RSSQKLSSGK MPIHDHDSGV ENSBTAP00000023728/1-1288 KNPVCFELSA EDQNAEREFF KKVSKNLSIK SSSQKLPPGK MPTNDHDSGV ENSTTRP00000000785/1-1276 KNPVYFELSA EGQNAEREFF NKVSKNLSIK RSSQKLPPGK MPISDHDSGV bmy_12717T0/1-833 KNPAYFELSA EGQNAEREFF NNVSKNLSIK RSSQKLPPGK MPISDHDSGV BACU000297/1-391 NQKLFQDVLG QGNH----LL NNSHK----- ---------- ---------- 401 450 ENSP00000360944/1-1288 EDEDFSPRPI PSPHPVSQKI SKIQPSVPEL SLVLDGNFIE SNPLPTPLEM ENSBTAP00000023728/1-1288 EDEDVSPRPI PSPHPVSQKV SKIQPSVPEL SLVLDENSIE PTPVPNPLEM ENSTTRP00000000785/1-1276 EDEDVSPRPI PSPHPVSQKV SKIQPSVPEL SLVLDGNFIE SNPVPNPLEM bmy_12717T0/1-833 EDEDVSPRPI PSPHPV---- SKIQPSVPEL SLVLDGNFIE SNPVPNPLEM BACU000297/1-391 ETEQPSTRAV IISHEC---- TRMQ------ ---------- ---------- 451 500 ENSP00000360944/1-1288 VNNENPP-LI NHLEHLKPLQ PQLYDEKHSP EVEAGEPSLR GIPNQLNQDK ENSBTAP00000023728/1-1288 VNNENPPLLI NHAEHLEQSQ PQLCDEKHRP EAEAGEPSFR GLPNPLNQDT ENSTTRP00000000785/1-1276 VNNENPPLLI NHSEHFEPLQ PQLYDEKHSP EVEAGEPSVR GLPNQLNQDT bmy_12717T0/1-833 VNNENPPLLI NHSEHFEPLQ PQLYDEKHSP EAEAGEPSLR GLPNQVNQDT BACU000297/1-391 ---------- ---------- -NVYHTKKK- KHDSG----- ----PVDKD- 501 550 ENSP00000360944/1-1288 PALLRHCKVR QPPAYKKGN- PHTRNSIKPS SHNGPSHDIF EKLQTVSAGN ENSBTAP00000023728/1-1288 -APLRHCKVR QLSTCKKGN- SHIRNSSKP- SFNGLSSDTS EKLQTVSAAN ENSTTRP00000000785/1-1276 -APLRHCKVR RPSTCKKGNN PHIRSSVTPS SFNGPSPEAS EKLQTVSAGN bmy_12717T0/1-833 -ALLRHCK-- ---------- ---------- ---------- ---------- BACU000297/1-391 ------C--- ---------- ---------- ---------- ---------- 551 600 ENSP00000360944/1-1288 VQNEEYPIRP STLNSRQSSL APQSQPHDFV FSPHNSGRPM ELQIPTPPLP ENSBTAP00000023728/1-1288 VHKEEYPVRS STFNSKQSSL APQSHPHNFV FSLHNSGRPM EFQIPTPQPP ENSTTRP00000000785/1-1276 VHKEEYPVRS STFNSRQSSF APQSHPHNFV FSPHNSGRPM EFQIPTPPPP bmy_12717T0/1-833 ---------- ---------- ---------- ---------- ---------- BACU000297/1-391 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000360944/1-1288 SYCSTNVCRC CQHHSHIQYS PLNSWQGANT VGSIQDVQSE ALQKHSLFHP ENSBTAP00000023728/1-1288 SYYSTNVCSC CQHHGHIQYS PINSWQGMNT VGSVQDLKSE TLHKHSLFHP ENSTTRP00000000785/1-1276 SYYSTNVCNC FQHHGCIQYS PINSWQGMNT VGSTQDLQSE ALQKHSLFHP bmy_12717T0/1-833 ---------- ---------- ---------- ---------- ---------- BACU000297/1-391 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000360944/1-1288 SGCPALYCNA FCSSSSPIAL RPQGDMGSCS PHSNIEPSPV ARPPSHMDLC ENSBTAP00000023728/1-1288 SGCPAQYHNA FFSSSSPIAL RPQGNMRGCS SDSNVEPSPA ARLPPHVDFC ENSTTRP00000000785/1-1276 SGCPAQY-NA FCSSSSPVAL RPQGNMGGCS SHSNVEPSPV ARLPPHVDSC bmy_12717T0/1-833 ---------- ---------- ---------- ---------- ---------- BACU000297/1-391 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000360944/1-1288 NPQPCTVCMH TPKTESDNGM MGLSPDAYRF LTEQDRQLRL LQAQIQRLLE ENSBTAP00000023728/1-1288 SPWPCAVCMH TPKTGSDDGM MGLSPDAYRF ITEQDRQLRL LQAQIQRLLL ENSTTRP00000000785/1-1276 NPRPCAVCVH TPKTGSDNGM MGLSPDAYRF VTEQDRQLRL LQAQIQRLLE bmy_12717T0/1-833 ---------- ---------- ---------- ---------- ----IQRLLE BACU000297/1-391 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000360944/1-1288 AQSLMPC-SP KTTAVEDTVQ AGRQMELVSV EAQSSPGLHM RKGVSIAVST ENSBTAP00000023728/1-1288 HMAVLSTLSG AFTALHFKIQ LTQSLRVSVT QFYPCTQTHY DPSVSIICSP ENSTTRP00000000785/1-1276 AQSLQPC-SP KTTTVEDTVQ AARQMELVSM EAQSPPALHM RKSVSIAVST bmy_12717T0/1-833 AQSLQPC-SP KTTTVEDTVQ AARQMELVSM EAQSPPALHM RKSVSIAVST BACU000297/1-391 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000360944/1-1288 GASLFWNAAG EDQEPDSQMK QDDTKISSED MNFSVDINNE VTSLPGSASS ENSBTAP00000023728/1-1288 GASLFWNAAG DHQEPESQLR QDDTKISSED MNFSVDINNE VTSTPGSASS ENSTTRP00000000785/1-1276 GASLFWNAAG DDQEPESQLR QDDTKISSED MNFSVDINNE VTSTPGSASS bmy_12717T0/1-833 ---------G DDQEPESQLR QDDTKISSED MNFSVDINNE VTSTPGSASS BACU000297/1-391 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000360944/1-1288 LKAVDIPSFE ESNIAVEEEF NQPLSVSNSS SLVVRKEPDV PVFFPSGQLA ENSBTAP00000023728/1-1288 LKAVDIPSFE ESNVAVEEEF NQQLCISN-S SPLERKEPDV PVFFPNPLQA ENSTTRP00000000785/1-1276 LKAVDIPSFE ESNIAV-EEF NQQLSISNSS SPLVEKEPDV PVFFPNPLLA bmy_12717T0/1-833 LKAVDIPSFE ESNIAVEEEF NQQLSISN-- ---------- ---------- BACU000297/1-391 ---------- ---------- ---------- ---------- ---------- 901 950 ENSP00000360944/1-1288 ESVSMCLQTG PTGGASNNSE TSEEPKIEHV MQPLLHQPSD NQKIYQDLLG ENSBTAP00000023728/1-1288 ECGSMCFQSG PTEGATNSSG TSGEPQTEQV MQPLPHQPSD NQQLFQDVLS ENSTTRP00000000785/1-1276 ESVSMCFQSG PTEGATNSSV TSGEPKTEQV MQPLPHQPSD NQKLFQDVLG bmy_12717T0/1-833 ---------- ---------- ---------- ---------- ---------- BACU000297/1-391 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSP00000360944/1-1288 QVNHLLNSSS KETEQPSTKA VIISHECTRT QNVYHTKKKT HHSRLVDKDC ENSBTAP00000023728/1-1288 QGNHLLNNSP KVTEEPSTKA VIISDECTKN QNVYHTKKKK HDPGSVDKEC ENSTTRP00000000785/1-1276 QGNHLLNNSH KETEQPSTKA VIISHECTRM QNVYHTKKKN HDSGPVDKDC bmy_12717T0/1-833 ---------- ---------- ---------- ---------- ---------- BACU000297/1-391 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000360944/1-1288 VLNATLKQLR SLGVKIDSPT KVKKNAHNVD HASVLACISP EAVISGLNCM ENSBTAP00000023728/1-1288 VLNATLKQLR SFGVKIDSPT KVKKNAHKVD HASVLACISP EAVISGLNYM ENSTTRP00000000785/1-1276 VLNATLKQLR SLGVKIDSPT KMKKNVHKVD HAXXXXXXXX XXXXXXXXCM bmy_12717T0/1-833 ---------- ---------- ---------- ---VLACISP EAVISGLNCM BACU000297/1-391 VLNATLKQLR SLGVKIDSPT KVKKNVHKVD HASVLACISP EAVISGLNCM 1051 1100 ENSP00000360944/1-1288 SFANVGMSGL SPNGVDLSME ANAIALKYLN ENQLSQLSVT RSNQNNCDP- ENSBTAP00000023728/1-1288 SFANVGMSGL SPSGVDLSME ANAIALKYLN ENQLSQLSLT RSSQNNGDSP ENSTTRP00000000785/1-1276 SFANVGMSGL SPNGVDLSME ANAIALKYLN ENQLSQLSLT RSNQNNCDSS bmy_12717T0/1-833 SFANVGMSGL SPNGVDLSME ANAIALKYLN ENQLSQLSLT RSNQNNCDSS BACU000297/1-391 SFANVGMSGL SPNGVDLSME ANAIALKYLN ENQLSQLSLT RSNQNNCDSS 1101 1150 ENSP00000360944/1-1288 FSLLHINTDR STVGLSLISP NNMSFATKKY MKRYGLLQSS DNSEDEEEPP ENSBTAP00000023728/1-1288 FSLLHINTDR STVGLSLISP NNMSFATKKY MKRYGLIQSS DNSEDEEEPP ENSTTRP00000000785/1-1276 FSLLHINTDR NTVGLSLISP NNMSFATKKY MKRYGLIQSS DNSEDEEEPP bmy_12717T0/1-833 FSLLHINTDR NTVGLSLISP NNMSFATKKY MKRYGLIQSS DNSEDEEEPP BACU000297/1-391 FSLLHINTDR NTVGLSLISP NNMSFATKKY MKRYGLIQSS DNSEDEEEPP 1151 1200 ENSP00000360944/1-1288 DNADSKSEYL LNQNLRSIPE QLGGQKEPSK NDHEIINCSN CESVGTNADT ENSBTAP00000023728/1-1288 NNTDGKSEHL VNQNLTYIAE QLDCQKEPSR NAGEITDCSN CDSMGTHTGT ENSTTRP00000000785/1-1276 NNTDTKSEHL ANQNLTCIAE QLDCQKEPSR NAWEITTC-N CDSMGTHTDM bmy_12717T0/1-833 NNTDTKSEHL VNQNLTCIAE QLDCQKEPSK NACEITTRYN YDSMGTHTDM BACU000297/1-391 DNTDTKSEHL VNQNLTCIAE QLDCQKEPSK NACEITTRYN YDSTGTHTDM 1201 1250 ENSP00000360944/1-1288 PVLRNITNEV LQTKAKQQLT EKPAFLVKNL KPSPAVNLRT GKAEFTQHPE ENSBTAP00000023728/1-1288 PVLRNITNEA VQPKATQQLN ENPTFLLKNL KPSPAMNLRI GKAEFTQHPE ENSTTRP00000000785/1-1276 PVLRNITNEV VQPKATPQLN ENPDFLLKNL KSSPAVKLRT GKAEFTQHPE bmy_12717T0/1-833 PVLRNITNEV VRPKATPQLN ENPDFLLKNL KSSPAVNLRT GKAEFTQHPE BACU000297/1-391 PVLRNITNEV VRPKATPQLN ENPDFLLKNL KSSPAVNLRT GKAEFTQHPE 1251 1300 ENSP00000360944/1-1288 KENEGDITIF PESLQPSETL KQMNSMNSVG TFLDVKRLRQ LPKLF ENSBTAP00000023728/1-1288 KENVRDTPIF PESLKPSETL KQMNSMNSVG TFLDVKRLRQ LPKLF ENSTTRP00000000785/1-1276 KENVRDTPIF PESLKPSDTL KQMNSMNSVG TFLDVKRLRQ LPKLF bmy_12717T0/1-833 KENVRDTPIF PESLKPSDTL KQMNSMNSVG TFLDVKRLRQ LPKLF BACU000297/1-391 KENVRDTPIF PESLKPSDTL KQMNSMNSVG TFLDVKRLRQ LPKLF