KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:21:30 2014 Check: 00 .. Name: ENSP00000250617/1-776 Len: 864 Check: 7671 Weight: 1.00 Name: ENSTTRP00000002146/1-774 Len: 864 Check: 5421 Weight: 1.00 Name: ENSBTAP00000023731/1-776 Len: 864 Check: 6170 Weight: 1.00 Name: bmy_09196T0/1-539 Len: 864 Check: 8024 Weight: 1.00 Name: BACU010371/1-636 Len: 864 Check: 4646 Weight: 1.00 // 1 50 ENSP00000250617/1-776 MNPEEQIVTW LISLGVLESP KKTICDPEEF LKSSLKNGVV LCKLINRLMP ENSTTRP00000002146/1-774 MNPEERIVTW LISLGVLDSP KKTICDPEEF LKSSLKNGVV LCKLINRLRP ENSBTAP00000023731/1-776 MNPEERVVTW LISLGVLDSP KKTICDPEEF LKSSLKNGVV LCKLINRLRP bmy_09196T0/1-539 MVPE------ ---------- ---------- ---------- ---------- BACU010371/1-636 MNPEERIVTW LISLGVLDSP KKTICDPEEF LKSSLKNGVV LCKLINRLRP 51 100 ENSP00000250617/1-776 GSVEKFCLDP QTEADCINNI NDFLKGCATL QVEIFDPDDL YSGVNFSKVL ENSTTRP00000002146/1-774 GSIEKYCLEP QTEADCTNNI NDFLKGCAAL QVEVFDPDDL HAGVNFSKVL ENSBTAP00000023731/1-776 GSVEKYCLEP QTEADCTNNI NDFLKGCAAL QVEIFDPDDL YAGVNFSKVL bmy_09196T0/1-539 ---------- ---------- ---------- ---------- ---------- BACU010371/1-636 GSIEKYCLEP QTEADCTNNI NDFLKGCAAL QVEVFDPDDL HAGVNFSKVL 101 150 ENSP00000250617/1-776 STLLAVNKAT EDQLSERPCG RSSSLSAANT SQTNPQGAVS STVSGLQRQS ENSTTRP00000002146/1-774 STLLAVSKAT EDQLSERPCG RSSSLSAANS SQTNPQGAVS SPAPGLQRQS ENSBTAP00000023731/1-776 NTLLAVNKAT EDQLSERPCG RSSSLSAANS SQTNPQGAVS STAPGLQRQS bmy_09196T0/1-539 ---------- ---------- ---------- ---------- ---------- BACU010371/1-636 STLLAVNKAT EDQLSERPCG RSSSLSAANS SQTNPQGAVS STAPGLQRQS 151 200 ENSP00000250617/1-776 KTVEMTENGS HQLIVKARFN FKQTNEDELS VCKGDIIYVT RVEEGGWWEG ENSTTRP00000002146/1-774 KPVEMTENGS HQLIVKARFN FKQTNEDELS VCKGDIIYVT RVEEGGWWEG ENSBTAP00000023731/1-776 KPVEMTENGS HQLIVKARFN FKQTNEDELS VCKGDIIYVT RVEEGGWWEG bmy_09196T0/1-539 ---------- ---------- ---------- ---------- ---------- BACU010371/1-636 KPVEMTENGS HQLIVKARFN FKQTNEDELS VCKGDIIYVT RVEEGGWWEG 201 250 ENSP00000250617/1-776 TLNGRTGWFP SNYVREIKSS ERPLSPKAVK GFETAPLTKN YYTVVLQNIL ENSTTRP00000002146/1-774 TLNG-TGWFP SNYVREIKSS ERPLSPKAVK GFETTPLTKN YYTVVLQNIL ENSBTAP00000023731/1-776 TLNGRTGWFP SNYVREIKSS ERPLSPKAVK GFEATPLTKN YYTVVLQNIL bmy_09196T0/1-539 ---------- ---------- ---------- ---------- ----VLQNIL BACU010371/1-636 TLNGRTGWFP SNYVREIKSS ERPLSPKAVK GFETTPLTKN YYTVVLQNIL 251 300 ENSP00000250617/1-776 DTEKEYAKEL QSLLVTYLRP LQSNNNLSTV EVTSLLGNFE EVCTFQQTLC ENSTTRP00000002146/1-774 DTEKEYAKEL QSLLVTYLRP LQSNNNLSTV EFTSLLGNFE EVCTFQQTLC ENSBTAP00000023731/1-776 DTEKDYAKEL QSLLVTYLRP LQSNNNLSTV EFTSLLGNFE EVCTFQQTLC bmy_09196T0/1-539 DTEKDYAKEL QSLLVTYLRP LQSNNNLSTV EFTSLLGNFE EVCTFQQTLC BACU010371/1-636 DTEKDYAKEL QSLLVTYLRP LQSNNNLSTV EFTSLLGNFE EVCTFQQTLC 301 350 ENSP00000250617/1-776 QALEECSKFP ENQHKVGGCL LSLMPHFKSM YLAYCANHPS AVNVLTQHS- ENSTTRP00000002146/1-774 QALEECSKFP ENQHKVGGCL LNLMPHFKSM YLAYCANHPS AVNVLTQHS- ENSBTAP00000023731/1-776 QALEECSKFP ENQHKVGGCL LSLMPHFKSM YLAYCANHPS AVNVLTQHS- bmy_09196T0/1-539 QTLEECSKFP ENQHKVGGCL LNLMPHFKSM YLAYCANHPS AVNVLTQHSL BACU010371/1-636 QALEECSKFP ENQHKVGGCL LNLMPHFKSM YLAYCANHPS AVNVLTQHS- 351 400 ENSP00000250617/1-776 --------DE LEQFMENQGA SSPGILILTT NLSKPFMRLE KYVTLLQELE ENSTTRP00000002146/1-774 --------DD LERFMENQGA SSPGILILTT SLSKPFMRLE KYVTLLQELE ENSBTAP00000023731/1-776 --------DE LERFMENQGA SSPGILILTT SLSKPFMRLE KYVTLLQELE bmy_09196T0/1-539 EVRMLHGNDD LERFMESQGA SSPGILILTT SLSKPFMRLE KYVTLLQELE BACU010371/1-636 --------DD LERFMESQGA SSPGILILTT SLSKPFMRLE KYVTLLQELE 401 450 ENSP00000250617/1-776 RHMEDTHPDH QDILKAIVAF KTLMGQCQDL RKRKQLELQI LSEPIQAWEG ENSTTRP00000002146/1-774 RHMEDTHPDH QDILKAIIAF KTLMGQCQDL RKRKQLELQI LSEPIQAWEG ENSBTAP00000023731/1-776 RHMEDTHPDH QDILKAIVAF KTLMGQCQDL RKRKQLELQI LSEPIQAWEG bmy_09196T0/1-539 RHME------ ---------- ----GQCQDL RKRKQLELQI LSEPIQAWEG BACU010371/1-636 RHME------ ---------- ----GQCQDL RKRKQLELQI LSEPIQAWEG 451 500 ENSP00000250617/1-776 EDIKNLGNVI FMSQVMVQYG ACEEKEERYL MLFSNVLIML SASPRMSGFI ENSTTRP00000002146/1-774 EDIKTLGNVI FMSQVMVQYG TCEEKEERYL MLFSSVLIML SASPRMSGFI ENSBTAP00000023731/1-776 EDIKTLGNVI FMSQVMVQCG TSEEKEERYL MLFSSVLIML SASPRMSGFI bmy_09196T0/1-539 EDIKTLGNVI FMSQVMVQYG TCEEKEERYL MLFSSVLIML SASPRMS--- BACU010371/1-636 EDIKTLGNVI FMSQVMVQYG TCE------- ---------- ---------- 501 550 ENSP00000250617/1-776 YQGKIPIAGT VVTRLDEIEG NDCTFEITGN TVERIVVHCN NNQDFQEWLE ENSTTRP00000002146/1-774 YQGKMPIAGM VVTRLDEIEG NDYTFEITGN IVERIVVHCG NNQGFQDWLE ENSBTAP00000023731/1-776 YQGKIPVAGM VVTRLDEIEG NDSTFEITGN IVERIVVHCG NNQDFQDWLE bmy_09196T0/1-539 ---------- ---------- ---------N MVERIVVHCG NNQDFQDWLE BACU010371/1-636 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000250617/1-776 QLNRLIRGPA SCSSLSKTSS SSCSAHS--- ---------- --------SF ENSTTRP00000002146/1-774 HLYRLIRGPA SCSSLSKTSS SSCSAHS--- ---------- --------SF ENSBTAP00000023731/1-776 HLYRLIRGPA SCSSLSKTSS SSCSAHS--- ---------- --------SF bmy_09196T0/1-539 HLYRLMRGPA SCSSLSKTSS SSCSAHSCMA QGSGSDGRLP ASHQTFSQSF BACU010371/1-636 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000250617/1-776 SSTGQPRGPL EPPQIIKPWS LSCLRPAPPL RPSAALGYKE RMSYI----- ENSTTRP00000002146/1-774 SSTGQPRGPL EPPQIIKPWS LSCLRPAPPL RPSAALGYKE RMSYI----- ENSBTAP00000023731/1-776 SSTGQPRGPL EPPQIIKPWS LSCLRPAPPL RPSAALGYKE RMSYI----- bmy_09196T0/1-539 SSTGQPRGPL EPPQIIKPWS LSCLRPAPPL RPSAALGYKE NLARKQPHRL BACU010371/1-636 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000250617/1-776 ---------- ---------- LKESSKSPKT MKKFLHKRKT ERKPSEEEYV ENSTTRP00000002146/1-774 ---------- ---------- LKESGKSPKT MKKFLHKRKT ERKPSEEEYV ENSBTAP00000023731/1-776 ---------- ---------- LKESSKSPKT MKKFLHKRKT ERKPSEEEYV bmy_09196T0/1-539 ALEIDRTVFL GLLHDDIASE TNESGKSPKT MKKFLHKRKT ERKPSEEEYV BACU010371/1-636 ---------- ---------- --ESGKSPKT MKKFLHKRKT ERKPSEEEYV 701 750 ENSP00000250617/1-776 IRKSTAALEE DAQILKVIEA YCTSANFQQG HGSS------ ---------- ENSTTRP00000002146/1-774 IRKSTAALEE DAQILKVIEA YCXXXXXXXX XXXX------ ---------- ENSBTAP00000023731/1-776 IRKSTAALEE DAQILKVIEA YCTSASFPQG HGSS------ ---------- bmy_09196T0/1-539 IRKSTAALEE DAQILKVIEA YCTSASFQQG HGSS------ ---------- BACU010371/1-636 IRKSTAALEE DAQILKVIEA YCTSASFQQG HGSSRFPQTT FSNERCFFAT 751 800 ENSP00000250617/1-776 ---------- -------TRK DSIPQVLLPE EEKLIIEETR SNGQTIMEEK ENSTTRP00000002146/1-774 ---------- -------ARK DSVPQVLLPE EEKLIIEETR SNGQTIIEEK ENSBTAP00000023731/1-776 ---------- -------ARK DSVPQVLLPE EEKLIVEETR SNGQTIIEEK bmy_09196T0/1-539 ---------- -------ARK DSVPQVLLPE EEKLIIEETR SNGQTIIEEK BACU010371/1-636 AHRRLEKEKS NPDGLQGARK DSVPQVLLPE EEKLIIEETR SNGQTIIEEK 801 850 ENSP00000250617/1-776 SLVDTVYALK DEVRELKQEN KRMKQCLEEE LKSRRDLEKL VRRLLKQTDE ENSTTRP00000002146/1-774 SLVDTVYA-K DEVKELKQEN KRMKQCLEEE LKSRRDLEKL VRRLLKQTDE ENSBTAP00000023731/1-776 SLVDTVYALK DEVKELKQEN KRMKQCLEEE LKSRRDLEKL VRRLLKQTDE bmy_09196T0/1-539 SLVDTVYALK DEVKELKQEN KRMKQCLEEE LKSRRDLEKL VRRLLKQTDE BACU010371/1-636 SLVDTVYALK DEVKELKQEN KRMKQCLEEE LKSRRDLEKL VRRLLKQTDE 851 900 ENSP00000250617/1-776 CIRGESSSKT SILP ENSTTRP00000002146/1-774 CMRAESSSKP SILP ENSBTAP00000023731/1-776 CIRAESSSKT SVLP bmy_09196T0/1-539 CIRAESSSKT SILP BACU010371/1-636 CIRAESSSKT SILP