KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:21:32 2014 Check: 00 .. Name: ENSBTAP00000023758/1-620 Len: 745 Check: 3204 Weight: 1.00 Name: bmy_22339T0/1-371 Len: 745 Check: 8859 Weight: 1.00 Name: ENSP00000375586/1-659 Len: 745 Check: 8018 Weight: 1.00 Name: BACU005986/1-689 Len: 745 Check: 1484 Weight: 1.00 Name: ENSTTRP00000003306/1-682 Len: 745 Check: 1376 Weight: 1.00 // 1 50 ENSBTAP00000023758/1-620 ---------- ---------- ---------- ---------- ---------- bmy_22339T0/1-371 IHGPRRGTGR LARRCQPGLR SSRGLRTRPP SSSASG---G GTLSLSAFLQ ENSP00000375586/1-659 ---------- ---------M AAAVLMDRV- ---------Q SCVTFEDVF- BACU005986/1-689 ---------- ---------M AAAALMDRA- ---------Q GCVTFEDVF- ENSTTRP00000003306/1-682 ---------- ---------M AAATLMDRAQ CVELMSPLWQ GCVTFEDVL- 51 100 ENSBTAP00000023758/1-620 ---------- ---------- ---------- ------MLEN FAHVAALG-- bmy_22339T0/1-371 GGAWGSECDS RPEATPPSVG WGF--GCSRR ACSSRQLLDP ILLRGSHG-G ENSP00000375586/1-659 ---------- ---VYFSREE WELL-EEAQR FLYRDVMLEN FALVATLG-- BACU005986/1-689 ---------- ---VYFSREE WEVL-EEAQR LLYRDVMLEN FALVASLG-- ENSTTRP00000003306/1-682 ---------- ---VSIFRIP CSCPGGGGRK PRVPDRALTP ATVREARGPC 101 150 ENSBTAP00000023758/1-620 ---------C WCEADNEEAP SEQIVCVEGV SEVRTPGSCP LIQKVHPCER bmy_22339T0/1-371 RGVYGPGSGC WCEADNEEAP SEQSVFVEGV SEVRTPESCP FIQKAQPCEI ENSP00000375586/1-659 ---------F WCEAEH-EAP SEQSVSVEGV SQVRTAESGL F-QKAHPCEM BACU005986/1-689 ---------C WCESDNEEAP SEQSVFVEGV SEVRTPESCP FIQKAQPCEI ENSTTRP00000003306/1-682 HAAWELKESC WCESDNEEAP SEQSILV-GV SEVRTPESCP FIQKAHPCEI 151 200 ENSBTAP00000023758/1-620 SDPLLKDIFH WAEHQGSCPA QNLDTRDPCG RGFLLSENFH QHQKPHSGND bmy_22339T0/1-371 CDPLLKDILH LAEHQGSCPA QKRYTCDPRG RGFLFSENFY QHQKQYSGKN ENSP00000375586/1-659 CDPLLKDILH LAEHQGSHLT QKLCTRGLCR RRFSFSANFY QHQKQHNGEN BACU005986/1-689 CDPLLKDILH LAEHQGSCPA QKRYTCDPCG RGFLFNENFY QHQKQYSGKN ENSTTRP00000003306/1-682 CDPLLKDILH LAEHQGSCPA QKLYTCDSCG QGFLFSENFY QHQKQYSGKN 201 250 ENSBTAP00000023758/1-620 PVQGDADEAS CVKSCAVYEL GRPCTCRGKG MDMLDSSSLF QHQSTHSGLS bmy_22339T0/1-371 PVRRGDDGAS LVKSCAVHML GRPFTCREEG MDLPDSSGLL QYQSTYNGMS ENSP00000375586/1-659 CFRGDDGGAS FVKSCTVHML GRSFTCREEG MDLPDSSGLF QHQTTYNRVS BACU005986/1-689 PVRRGDDGAS LVKSCAVHML GRPFTCREEG MDLPDSSGLL QYQSTYNGMS ENSTTRP00000003306/1-682 PVRRGDDGAS LVKSCAVHML GRPFTCREEG MDLPDSSGLF QHQSTHNGMS 251 300 ENSBTAP00000023758/1-620 PHRTAEFAES FAHKSSLSCH QGDSDELMFF SCTDDEKAFM NAFSLLDNQV bmy_22339T0/1-371 PCRRAEFMEP FPQSSRLGRH QXDHDELMLL NCSDNGKAFL NTFTLLDNQI ENSP00000375586/1-659 PCRRTECMES FPHSSSLRQH QGDYDGQMLF SCGDEGKAFL DTFTLLDSQM BACU005986/1-689 PCRRAEFMEP FPQSSRLGRH QGDHDELMLL NCSDNGKAFL NTFTLLDNQI ENSTTRP00000003306/1-682 PCRRAEFMEP FPQSSRLGRH QGDHDELMLL NCSDNGKAFL NTFTLHDNQI 301 350 ENSBTAP00000023758/1-620 TQAVEVQSFR CLPCGNLSNE KSTLIHHRKL HGGETSHVCR ECGKAFINLS bmy_22339T0/1-371 TQA-ELQAFR CLSCGNLSKE KSVLIHHTKI HGVETSHVCM ECGKAFIHLS ENSP00000375586/1-659 THA-EVRPFR CLPCGNVFKE KSALINHRKI HSGEISHVCK ECGKAFIHLH BACU005986/1-689 TQA-ELRAFR CLPCGNLSKE KSALIHHNKI HSGEISHVCK ECGKAFIHLS ENSTTRP00000003306/1-682 TQA-EVRAFR CLPCGDLSKE NSALTHHNKI HSGEISHVCK ECRKSFIHLS 351 400 ENSBTAP00000023758/1-620 HLKTHQKFHT GKRQYTCSEC GKAFSRKDTL VQHQRVHTGE RSYDCTECGK bmy_22339T0/1-371 HLKTHQKFHN GKRQYTCSE- ---------- ---------- ---------- ENSP00000375586/1-659 HLKMHQKFHT GKRHYTCSEC GKAFSRKDTL VQHQRVHTGE RSYDCSECGK BACU005986/1-689 HLKTHQKFHN GKRQYTCSEC GKAFSRKDTL VQHQRVHTGE RSYDCSECGK ENSTTRP00000003306/1-682 HLKTHQKFHT GKRQYTCSEC GKAYSRSSHL VQHQRIHTGE RPYECGECGK 401 450 ENSBTAP00000023758/1-620 AYSRSSHLVQ HQRIHTGERP YKCSECGKAF SRKD------ ---------- bmy_22339T0/1-371 ---------- ---------- ---------- ---------- ---------- ENSP00000375586/1-659 AYSRSSHLVQ HQRIHTGERP YKCNKCGKAF SRKD------ ---------- BACU005986/1-689 AYSRSSHLVQ HQRIHTGERP YECSECGKAF SRKNTLVQHQ RVHTGERSYD ENSTTRP00000003306/1-682 AFSRKNTLVQ HQRVHTGERS YDCSECGKAY SRSS------ ---------- 451 500 ENSBTAP00000023758/1-620 ---------- --TLVQHQRF HTGERPYECS ECGKFFSQSS HLIEHWRIHT bmy_22339T0/1-371 ---------- ---------- ---------- ---------- ---------- ENSP00000375586/1-659 ---------- --TLVQHQRF HTGERPYECS ECGKFFSQSS HLIEHWRIHT BACU005986/1-689 CSECGKAYSR SSHLVQHQRI HTGERPYECS ECGKFFSQSS NLIEHWRIHT ENSTTRP00000003306/1-682 ---------- --HLVQHQRV HTGERPYECS ECGKFFSQSS HLIEHWRIHT 501 550 ENSBTAP00000023758/1-620 GARPYECIEC GKFFSHNSSL IKHRRVHTGA KSYVCGKCGK AFGCKDTLVQ bmy_22339T0/1-371 ---------- ---------- ---------- ---------- ---------- ENSP00000375586/1-659 GARPYECIEC GKFFSHNSSL IKHRRVHTGA RSYVCSKCGK AFGCKDTLVQ BACU005986/1-689 GARPYECIEC GKFFSHNSSL IKHRRVHTGA RSYVCGKCGK AFGCKDTLVQ ENSTTRP00000003306/1-682 GARPYECIEC GKFFSHNSSL IKHRRVHTGA RSYVCGKCGK AFGCKDTLVQ 551 600 ENSBTAP00000023758/1-620 HQIIHTGARP YECSECGKAF SRKDTLVQHR KIHTGERPYE CNDCGKFFSH bmy_22339T0/1-371 ---------- -----CGKAF SRKD------ ---------- ---------- ENSP00000375586/1-659 HQIIHTGARP YECSECGKAF SRKDTLVQHQ KIHTGERPYE CGECGKFFSH BACU005986/1-689 HQIIHTGARP YECSECGKAF SRKDTLVQHR KIHTGERPYE CGECGKFFSH ENSTTRP00000003306/1-682 HQIIHTGARP YECSKCGKAF SRKDTLVQHR KIHTGERPYE CSECGKFFSH 601 650 ENSBTAP00000023758/1-620 SSNLIVHQRI HTGAKPYECS ECGKCFSHNS SLILHQRVHS GARPYVCSEC bmy_22339T0/1-371 ---------- ---------- ---------- ---------- ---------- ENSP00000375586/1-659 SSNLIVHQRI HTGAKPYECN ECGKCFSHNS SLILHQRVHT GARPYVCSEC BACU005986/1-689 SSNLIVHQRI HTGAKPYECS ECGKCFSHNS SLILHQRVHS GARPYVCSEC ENSTTRP00000003306/1-682 SYNLIVHQRI HTGAKPFECS ECGKCFSHNS SLILHQRGHS GVRPYVCSEC 651 700 ENSBTAP00000023758/1-620 GKAYISSSHL VQHKKVHTGA RPYKCSECGK FFSRNSSLIL HQRVHTGEKP bmy_22339T0/1-371 ---------- ---------- ---------- ---------- ---------- ENSP00000375586/1-659 GKAYISSSHL VQHKKVHTGA RPYECSECGK FFSRNSGLIL HQRVHTGEKP BACU005986/1-689 GKAYISSSHL VQHKKVHTGA RPYECSECGK FFSRNSSLIL HQRVHTGEKP ENSTTRP00000003306/1-682 GKAYISSSHL VQHKKVHTGA RPYECNECGK FFSRNSSLIL HQRVHTGEKP 701 750 ENSBTAP00000023758/1-620 YVCNECGKAY SRSSHLVRHQ KAHPGEGPHE CGSFGDPLAA SLKLV bmy_22339T0/1-371 ---------- ---------- ---------- ---------- ----- ENSP00000375586/1-659 YVCSECGKAY SRSSHLVRHQ KAHTGERAHE CNSFGGPLAA SLKLV BACU005986/1-689 YVCSECGKAY SRSSHLVRHQ KVHTGEGPHE CNSFDGPSAA SVTLV ENSTTRP00000003306/1-682 YVCSECGKAY SRSSHLVRHQ KVHTGEGPHE CNSFDGPLAA SVTLV