KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:21:33 2014 Check: 00 .. Name: ENSP00000356992/1-1101 Len: 1491 Check: 2364 Weight: 1.00 Name: ENSBTAP00000023764/1-882 Len: 1491 Check: 3467 Weight: 1.00 Name: ENSTTRP00000008681/1-1096 Len: 1491 Check: 9181 Weight: 1.00 Name: bmy_06333T0/1-1096 Len: 1491 Check: 1282 Weight: 1.00 Name: BACU003864/1-1458 Len: 1491 Check: 9446 Weight: 1.00 // 1 50 ENSP00000356992/1-1101 MKSRQKGKKK GSAKERVFGC DLQEHLQHSG QEVPQVLKSC AEFVEEYGVV ENSBTAP00000023764/1-882 MKSRQKGKKK GSSKERVFGC DLQEHLQHSG QEVPQVLRSC AEFVEEYGVV ENSTTRP00000008681/1-1096 MKSRQKGKKK GSSKERVFGC DLQEHLQHSG QEVPQVLRSC AEFVEEYGVV bmy_06333T0/1-1096 MKSRQKGKKK CSSKERVFGC DLQEHLQHSG QEVPQVLRSC AEFVEEYGVV BACU003864/1-1458 MKSRQKGKKK GSSKERVFGC DLQEHLQHSG QEVPQVLRSC AEFVEEYGVV 51 100 ENSP00000356992/1-1101 DGIYRLSGVS SNIQKLRQEF ESERKPDLRR DVYLQDIHCV SSLCKAYFRE ENSBTAP00000023764/1-882 DGIYRLSGVS SNIQKLRQEF ETERKPDLRR DVYLQDIHCV SSLCKAYFRE ENSTTRP00000008681/1-1096 DGIYRLSGVS SNIQKLRQEF EAERKPDLRR DVYLQDIHCV SSLCKAYFRE bmy_06333T0/1-1096 DGIYRLSGVS SNIQKLRQEF EAERKPDLRR DVYLQDIHCV SSLCKAYFRE BACU003864/1-1458 DGIYRLSGVS SNIQKLRQEF EAERKPDLRR DVYLQDIHCV SSLCKAYFRE 101 150 ENSP00000356992/1-1101 LPDPLLTYRL YDKFAEAVGV QLEPERLVKI LEVLRELPVP NYRTLEFLMR ENSBTAP00000023764/1-882 LPDPLLTYRL YDKFAEAVAV QLEPERLVKI LEVLQELPVP NYRTLEFLMR ENSTTRP00000008681/1-1096 LPDPLLTYRL YDKFAEAVAV QLEPERLVKI LEVLRELPVP NYRTLEFLMR bmy_06333T0/1-1096 LPDPLLTYRL YDKFAEAVAV QLEPERLVKI LEVLRELPVP NYRTLEFLMR BACU003864/1-1458 LPDPLLTYRL YDKFAEAVAV QLEPERLVKI LEVLRELPVP NYRTLEFLMR 151 200 ENSP00000356992/1-1101 HLVHMASFSA QTNMHARNLA IVWAPNLLRS KDIEASGFNG TAAFMEVRVQ ENSBTAP00000023764/1-882 HLVHMASFSA QTNMHARNLA IVWAPNLLRS KDIEASGFNG TAAFMEVRVQ ENSTTRP00000008681/1-1096 HLVHMASLSA QTNMHARNLA IVWAPNLLRS KDIEASGFNG TAAFMEVRVQ bmy_06333T0/1-1096 HLVHMASLSA QTNMHARNLA IVWAPNLLRS KDIEASGFNG TAAFMEVRVQ BACU003864/1-1458 HLVHMASLSA QTNMHARNLA IVWAPNLLRS KDIEASGFNG TAAFMEVRVQ 201 250 ENSP00000356992/1-1101 SIVVEFILTH VDQLFGGAAL SGGEVESGWR SLPGTRASGS PEDLMPRPLP ENSBTAP00000023764/1-882 SIVVEFILTH VDQLFGGAAL SGSEVESGWR SLPGVRVSGS PEDLMPRSLP ENSTTRP00000008681/1-1096 SIVVEFILTH VDQLFEGAAL SGGEVESGWR SLPGVRVSGS PEDLMPRSLP bmy_06333T0/1-1096 SIVVEFILTH VDQLFE---- -GGEVESGWR SLPGVRVSGS PEDLMPRSLP BACU003864/1-1458 SIVVEFILTH VDQLFEGAAL SGGEVESGWR SLPGVRVSGS PEDLMPRSLP 251 300 ENSP00000356992/1-1101 YHLPSILQAG DGPPQMRPYH TIIEIAEHKR KGSLKVRKWR SIFNLGRSGH ENSBTAP00000023764/1-882 YNLPSILQAG DGPPQMRPYH TIIEIAEHKR KGSLKVRKWR SIFNLGRSGH ENSTTRP00000008681/1-1096 YHLPSVLQSG DGPPQMRPYH TIIEIAEHKR KGSLKVRKWR SIFNLGRSGH bmy_06333T0/1-1096 YHLPSILQAG DGPPQMRPYH TIIEIAEHKR KGSLKVRKWR SIFNLGRSGH BACU003864/1-1458 YHLPSILQAG DGPPQMRPYH TIIEIAEHKR KGSLKVRKWR SIFNLGRSGH 301 350 ENSP00000356992/1-1101 ETKRKLPRGA EDREDKSNKG TLRPAKSMDS LSAAAGASDE PEGLVGPSSP ENSBTAP00000023764/1-882 ETKRKLPRGA EDREDKSDKG TLRPAKSMDS LSAVAGVSDE PEGLVGSNSP ENSTTRP00000008681/1-1096 ETKRKLPRGA EDREDKSDKV TLRPAKSMDS LSAVAGVSDE PEGLVGRSSP bmy_06333T0/1-1096 ETKRKLPRGA EDREDKSDKG SLRPAKSMDS LSAVAGVSDE PEGLVGRSSP BACU003864/1-1458 ETKRKLPRGA EDR------- ---------- ---------E PEGLVGRSSP 351 400 ENSP00000356992/1-1101 RPSPLLPESL ENDSIEAAEG EQEPEAEALG GTNSEPGTPR AGRSAIRAGG ENSBTAP00000023764/1-882 RPGPLLTESL ENDSVEAAEC EQEPDPEALG GTSSEPGTPR PGRSAVRVGG ENSTTRP00000008681/1-1096 RPCPLLLASL ENDSVEAAEG EQEPEAEALA GTSSEPGTPR PGRSAIRAGG bmy_06333T0/1-1096 RPGPLLLASL ENDSVEAAEG EQEPEAEALG GTSSEPGTPR PGRSAIRAGG BACU003864/1-1458 RPAPLLLASL ENDSVDAAEG EQEPEAEALG GTSSEPGTPR PGRSAIRAGG 401 450 ENSP00000356992/1-1101 SSRAERCAGV HISDPYNVNL PLHITSILSV PPNIISNVSL ARLTRGLECP ENSBTAP00000023764/1-882 SSHAERRAGV HISEPYDVNL PAHISNMLNI SANNIS-ISL AGFARGLERP ENSTTRP00000008681/1-1096 SSHAERRAGV HISEPYDVNL PPHISSMLNI SPNIISNVSL AGFARGLEYP bmy_06333T0/1-1096 SSHAQRRAGV HISEPYDVNL PPHISSMLNI SPSIISNVSL AGFARGLEYP BACU003864/1-1458 SSHAQRRAGV HISEPYDVNL PPHISSMLNI SPGIISNVSL AGFARGLEYP 451 500 ENSP00000356992/1-1101 ALQHRPSPAS GPGPGPGLGP GPPDEKLEAS PASSPLADSG PDDLAPALED ENSBTAP00000023764/1-882 ALQPRPSPAS GPGPGPGLGP GPPDEKLEAS PAPGPSADSG PVDVAPALED ENSTTRP00000008681/1-1096 TLQPRPSPAS GPGSGPGLGP GPPDEKLEAS PAPGPLADSG PADMTPALED bmy_06333T0/1-1096 TLQPRPSPAS GPGSGPGLGP GPPDEKLEAS PAPGPLADSG PADMTPALED BACU003864/1-1458 TLQPRPSPAS GPGSGPGLGP GPPDEKLEAS PAPGPLADSG PADMTPALED 501 550 ENSP00000356992/1-1101 SLSQEVQDSF SFLEDSSSSE PEWVGAEDGE VAQAEAAGAA FSPGEDDPGM ENSBTAP00000023764/1-882 CLSQEVQDSF SFLEDSSSSE PEWVGVEDGE VAKAGPAGAA FSPGEEDPGM ENSTTRP00000008681/1-1096 CLSQEVQDSF SFLEDSSSSE PEWVGVVDGE VAKAGPAGAA FSPGEDDPGM bmy_06333T0/1-1096 CLSQEVQDSF SFLEDSSSSE AEWVGVLDGE VAKAGPAGAA FSPGEDDPGM BACU003864/1-1458 CLSQEVQDSF SFLEDSSSSE AEWVGVVDGE VVKAGPAGAA FSPGEDDPGM 551 600 ENSP00000356992/1-1101 GYLEELLGVG PQVEEFSVEP PLDDLSLDEA QFVLAPSCCS LDSAGPRPEV ENSBTAP00000023764/1-882 GYLEELLGAG PQVEEFSVEP PLDDLSLDEA QFVLAPSCCS LDSPGPRPET ENSTTRP00000008681/1-1096 GYLEELLGVG PQVEEFSVEP PLDDLSLDEA QFVLAPSCCS LDSPGSGPEA bmy_06333T0/1-1096 GYLEELLGVG PQVEEFSVEP PLDDLSLDEA QFVLAPSCCP LDSPGSRPEA BACU003864/1-1458 GYLEELLGVG PQVEEFSVEP PLDDLSLDEA QFVLAPSCCS LDSPGSRPEA 601 650 ENSP00000356992/1-1101 EEENGEEVFL SAYDDLSPLL GPKPPIWKGS GSLEGEAAGC GRQ-ALGQGG ENSBTAP00000023764/1-882 EEESGEEVFL SAYDDLSPLL EPKLPSWEGP GREEEKVAGS GRQEASGQAE ENSTTRP00000008681/1-1096 EEESGEEVFL SAYDDLSPLL GPKLPTWEGS GSLEEKGTGS GRQEAPGQAE bmy_06333T0/1-1096 EEESGEEVFL SAYDDLSPLL GPELPTWEGS CSLEEKGTGS GRQEAPGQAE BACU003864/1-1458 EEESGEEVFL SAYDDLSPLL GPELPTWEGS GSLEEKGTGS GRQEAPGQAE 651 700 ENSP00000356992/1-1101 EEQACWEVGE DKQAEPGGRL DIREEAEGSP ETKVEAGKAS EDRGEAGGSQ ENSBTAP00000023764/1-882 GEQALCEGGE D-EVEPGSRR DTGEEAEGRP ET-------- ---------- ENSTTRP00000008681/1-1096 GEQVFWEVEE GKEAEPGIRR DIREEAEGSP ESGVEGGEAS EEGVEAEGSQ bmy_06333T0/1-1096 GEQAFWEVEE DKEAEPGSRG DIREEAEGSP ESEVEGGEAS EEGVEAEGSQ BACU003864/1-1458 GEQAFWEVEE DKEAEPGSRG DIREEAEGSP ESEVEGAEAS EDGVEAEGSQ 701 750 ENSP00000356992/1-1101 ETKVRLRE-- -GSREETEAK EEKSKGQKKA DSM-EAKGVE EPGGDEYTDE ENSBTAP00000023764/1-882 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008681/1-1096 KVIDSLSERC GEEREETEAK GEESKGQQED ESTEEAKGVE ETGGEQG--- bmy_06333T0/1-1096 KVIDSLSERC GEEREETEAK GEESKGQQED ESMEEAKGVE ETGGEQGKDQ BACU003864/1-1458 KVIDSLSERC GEEREETDAK GEESKGQQED ESMEEAKGVE ETGGEQGKDQ 751 800 ENSP00000356992/1-1101 -KEKEIEREE D-EQREEAQV EAGRDLEQGA QEDQVAEEKW EVVQKQEAEG ENSBTAP00000023764/1-882 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008681/1-1096 -KERKTEREE E-EEGDEAQG EAGRDPEDGA QENQIAEESW EVVHKQEAEG bmy_06333T0/1-1096 GKERKTEQEE EAEEGEEAQG EAGRDPEDGA QENQTAEESW EVVHKREAEG BACU003864/1-1458 GKEGKTEREE EAEEGDEAQG EAGRDPEDGA QENQTAEESW EVVHKQEAEG 801 850 ENSP00000356992/1-1101 VREDEDKGQR EKGYHEARKD QGDGEDSRSP EAATEGGAGE VSKERESGDG ENSBTAP00000023764/1-882 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008681/1-1096 GREDEVKGQR GDENQEARED QGDGEDSRIP EAAAEGGAGK VSKERECGDG bmy_06333T0/1-1096 GREDEVKGQG GDENQEARED QGDGEDSRIP EAAAEGEAGE VSKERECGDG BACU003864/1-1458 GREDEVKGQG GDENQEARED QGDGEDSRIP EEAAEGGAGE VSKERECGDG 851 900 ENSP00000356992/1-1101 EAEGDQRAGG YYLEEDTLSE GSGVASLEVD CAKEGNPHSS EMEEVAPQPP ENSBTAP00000023764/1-882 ---------- ---------- ---------- ---------- ------PQPP ENSTTRP00000008681/1-1096 EDEGDQRAGG DHVEEGSLPE MPHVESLEVD SAKEGNAQPS ETEHAAPQPP bmy_06333T0/1-1096 EAEGDQRAGG DHLEEGSLPE VSPVESLEVD SAKEGNAQSS ETEQAAPQPR BACU003864/1-1458 EAEGDQRAGG DHLEEGSLPE VSPVESLEVD SAKEGNAQSS ETEQAAPQPR 901 950 ENSP00000356992/1-1101 QPEEMEPEGQ PSPDGCLCPC SLGLGGVGMR LASTLVQVQQ VRSVPVVPPK ENSBTAP00000023764/1-882 RPEEMDPEGQ PNPLGS---- ---AGGVGMR LASTLVQVQQ VRSVPVVPPK ENSTTRP00000008681/1-1096 RPEEMDPEGQ PSPLGS---- ---AGGVSMR LASTLVQVQQ VRSVPVVPPK bmy_06333T0/1-1096 RSEEMDPEGQ PSPLGS---- ---AGGVSMR LASTLVQVQQ VRSVPVVPPK BACU003864/1-1458 RPEELDPEGQ PSPLGS---- ---AGGVSMR LASTLVQVQQ VRSVPVVPPK 951 1000 ENSP00000356992/1-1101 PQFAKMPSAM CSKIHVAPAN PCPRPGRLDG TPGERAWGSR ASRSSWRNGG ENSBTAP00000023764/1-882 PQFAKMPSAM CGKIHVAPAN PCPKPGRLD- --GDRAWGSR ASRSSWRNGG ENSTTRP00000008681/1-1096 PQFAKMPSAM CGKIHVAPAN PCPRPGRLDG TPGERAWGSR ASRSSWRNGG bmy_06333T0/1-1096 PQFAKMPSAM CGKIHVAPAN PCPRPGRLDG TPGEWAWGSR ASRSSWRNGG BACU003864/1-1458 PQFAKMPSAM CGKIHVAPAN PCPRPGRLDG TPGEWAWGSR ASRSSWRNGG 1001 1050 ENSP00000356992/1-1101 SLSFDAAVAL ARDRQRTEAQ GVRRTQTCTE GGDYCLIPRT SPCSMISAHS ENSBTAP00000023764/1-882 SLSFDAAVAL ARDRQRTEAQ AVRRTQTCTG AGDYSLIPKT SPYSLIPAYA ENSTTRP00000008681/1-1096 SLSFDAAVAL ARDRQRTEAQ AVRRTQTCTG AGDYSLIPKT SPYSMISAYC bmy_06333T0/1-1096 SLSFDAAVAL ARDRQRTEAQ AVRRTQTCTG AGDYSLIPKT SPYSMIPAYC BACU003864/1-1458 SLSFDAAVAL ARDRQRTEAQ AVRRTQTCTG AGDYSLIPKT SPYSMIPAYC 1051 1100 ENSP00000356992/1-1101 PRPLSCLELP SEGAEGSGSR SRLSLPPREP QVPDPLLSSQ RRSYAFETQA ENSBTAP00000023764/1-882 PRPLSCLEIP AEGTEGSGPR SRFSLPPREP QPPDPLLSPQ RRSYGFETQA ENSTTRP00000008681/1-1096 PRPLSCLELP AEGTEGSGPR SRFSLPPREP QLPDPVESPQ RRSYAFETQA bmy_06333T0/1-1096 PRPLSCLELP AEGTEGSGPR SRFSLPPREP QLPEPVTSPQ RRSYAFETQA BACU003864/1-1458 PRPLSCLELP AEGTEGSGPR SRFSLPPREP QLPEPVTSPQ RRSYAFETQA 1101 1150 ENSP00000356992/1-1101 NPGKG----- ---------- ---------- ---------- ---------- ENSBTAP00000023764/1-882 NSGRG----- ---------- ---------- ---------- ---------- ENSTTRP00000008681/1-1096 NSGKG----- ---------- ---------- ---------- ---------- bmy_06333T0/1-1096 NSGKG----- ---------- ---------- ---------- ---------- BACU003864/1-1458 NSGKGAVATG EDPTSVAIAS IQSAATFPDP NVKYVFRTEN GGQVMYRVIQ 1151 1200 ENSP00000356992/1-1101 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023764/1-882 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008681/1-1096 ---------- ---------- ---------- ---------- ---------- bmy_06333T0/1-1096 ---------- ---------- ---------- ---------- ---------- BACU003864/1-1458 VSEGQLDGQT EGTGAISGYP ATQSMTQAVI QGAFTSDDAV DTEGTAAETH 1201 1250 ENSP00000356992/1-1101 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023764/1-882 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008681/1-1096 ---------- ---------- ---------- ---------- ---------- bmy_06333T0/1-1096 ---------- ---------- ---------- ---------- ---------- BACU003864/1-1458 YTYFPSTAVG DGAGGTTSGS TAAVVTTQGS EALLGQATPP GTGQFFVMMS 1251 1300 ENSP00000356992/1-1101 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023764/1-882 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008681/1-1096 ---------- ---------- ---------- ---------- ---------- bmy_06333T0/1-1096 ---------- ---------- ---------- ---------- ---------- BACU003864/1-1458 PQEVLQGGSQ RSIAPRTHPY SPKSEAPRTT RDEKRRAQHN EVERRRRDKI 1301 1350 ENSP00000356992/1-1101 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023764/1-882 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008681/1-1096 ---------- ---------- ---------- ---------- ---------- bmy_06333T0/1-1096 ---------- ---------- ---------- ---------- ---------- BACU003864/1-1458 NNWIVQLSKI IPDCSMESTK SGQSKGGILS KACDYIQELR QSNHRLSEEL 1351 1400 ENSP00000356992/1-1101 EGL------- ---------- ---------- ---------- ---------- ENSBTAP00000023764/1-882 EGL------- ---------- ---------- ---------- ---------- ENSTTRP00000008681/1-1096 EGL------- ---------- ---------- ---------- ---------- bmy_06333T0/1-1096 EAL------- ---------- ---------- ---------- ---------- BACU003864/1-1458 QGLDQLQLDN DVLRQQRGLY LFLLTGGGPK PTVLLPELRS LLASGRAQLI 1401 1450 ENSP00000356992/1-1101 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023764/1-882 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008681/1-1096 ---------- ---------- ---------- ---------- ---------- bmy_06333T0/1-1096 ---------- ---------- ---------- ---------- ---------- BACU003864/1-1458 DVRSREEAAA GTIPGALNIP VSELETALQM EPAAFKALYS TEKPKLEDEN 1451 1500 ENSP00000356992/1-1101 ---------- ---------- ---------- ---------- - ENSBTAP00000023764/1-882 ---------- ---------- ---------- ---------- - ENSTTRP00000008681/1-1096 ---------- ---------- ---------- ---------- - bmy_06333T0/1-1096 ---------- ---------- ---------- ---------- - BACU003864/1-1458 LIFFCQRGKR GFQATQLALG LGYKGARNYK GAYSEWFQKE G