KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:21:34 2014 Check: 00 .. Name: ENSTTRP00000008688/1-509 Len: 551 Check: 8284 Weight: 1.00 Name: ENSP00000356991/1-510 Len: 551 Check: 3343 Weight: 1.00 Name: ENSBTAP00000023767/1-510 Len: 551 Check: 2897 Weight: 1.00 Name: bmy_06334T0/1-532 Len: 551 Check: 4244 Weight: 1.00 Name: BACU003863/1-509 Len: 551 Check: 9870 Weight: 1.00 // 1 50 ENSTTRP00000008688/1-509 MPLSLGAEMC GPEAW-LPLL LLASFTGRCP AGELETSDLV TVVLGQDAKL ENSP00000356991/1-510 MPLSLGAEMW GPEAWLLLLL LLASFTGRCP AGELETSDVV TVVLGQDAKL ENSBTAP00000023767/1-510 MPLSLGAEMW GPAAWLLLLL LLASFTGQRL AGELETSDLV TVVLGQDAKL bmy_06334T0/1-532 ------METR G--------- ----LTGRCP AGELETSDLV TVVLGQDAKL BACU003863/1-509 MPLSLGAEMC GPETC-LLLL LLASFTGRCP AGELETSDLV TVVLGQDAKL 51 100 ENSTTRP00000008688/1-509 PCFYRGDPGE QVEQVAWARV HEGEGGQELA LLNSKYGLYV SSAYEGRVEQ ENSP00000356991/1-510 PCFYRGDSGE QVGQVAWARV DAGEGAQELA LLHSKYGLHV SPAYEGRVEQ ENSBTAP00000023767/1-510 PCFYRGDPGE QVEQVAWARV DAGEGGRELA LLNSKYGLHV SSAYEGRVEQ bmy_06334T0/1-532 PCFYRGDPGE QVEQVAWARV DADEGGQELA LLNSKYGLHV SSAYEGRVEQ BACU003863/1-509 PCFYRGDPGE QVEQVAWARV DADEGGQELA LLNSKYGLHV SSAYEGRVEE 101 150 ENSTTRP00000008688/1-509 PPPPRNPLDG AVLLRNAVQA DEGEYECRVS TFPAGSFQAQ LRLRVLVPPL ENSP00000356991/1-510 PPPPRNPLDG SVLLRNAVQA DEGEYECRVS TFPAGSFQAR LRLRVLVPPL ENSBTAP00000023767/1-510 PPPPRNPLDG AVLLRNAVQA DEGEYECRVS TFPAGSFQAR LRLRVLVPPL bmy_06334T0/1-532 PPPPRNPLDG AVLLRNAVQA DEGEYECRVS TFPAGSFQAR LRLRVLVPPL BACU003863/1-509 PPPPRNPLDG AVLLRNAVQA DEGEYECRVS TFPAGSFQVR LRLRVLVPPL 151 200 ENSTTRP00000008688/1-509 PSLNPGPALE EGQGLTLAAS CTAEGSPAPS VTWDTEVKGT TSSRSFAHSR ENSP00000356991/1-510 PSLNPGPALE EGQGLTLAAS CTAEGSPAPS VTWDTEVKGT TSSRSFKHSR ENSBTAP00000023767/1-510 PSLNPGPPLE EGQGLTLAAS CTAEGSPAPS VTWDTEVKGT ASHRSFTHSR bmy_06334T0/1-532 PSLNPGPALE EGQGLTLAAS CTAEGSPAPS VTWDTEVKGT TSSRSFTHSR BACU003863/1-509 PSLNPGPALE EGQGLTLAAS CTAEGSPAPS VTWDTEVKGT TSSRSFTHSR 201 250 ENSTTRP00000008688/1-509 SAAVTSEFHL VPSRSMNGQP LTCVVSHPGL LQDQRITHIL QVAFLAEASV ENSP00000356991/1-510 SAAVTSEFHL VPSRSMNGQP LTCVVSHPGL LQDQRITHIL HVSFLAEASV ENSBTAP00000023767/1-510 SAAVTSEFHL VPSRSMNGQP LTCVVSHPGL LQDQRITHIL QVAFLAEASV bmy_06334T0/1-532 SAAVTSEFHL VPSRSMNGQP LTCVVSHPGL LQDQRITHIL QVAFLAEASV BACU003863/1-509 SAAVTSEFHL VPSRSMNGQP LTCVVSHPGL LQDQRIIHIL QVAFLAEASV 251 300 ENSTTRP00000008688/1-509 RGLEDQKLWQ VGREGAMLKC LSEGQPPPSY NWTRLDGPLP SGVQAEGDTL ENSP00000356991/1-510 RGLEDQNLWH IGREGAMLKC LSEGQPPPSY NWTRLDGPLP SGVRVDGDTL ENSBTAP00000023767/1-510 RGLEDRKLWQ VGREGAMLKC LSEGQPPPSY NWTRLDGPLP SGVRAEGDTL bmy_06334T0/1-532 RGLEDQNLWQ VGREGAMLKC LSEGQPPPSY NWTRLDGPLP SGVRAEGDTL BACU003863/1-509 RGLEDQNLWQ VGREGAMLKC LSEGQPPPSY NWTRLDGPLP SGVRAEGDTL 301 350 ENSTTRP00000008688/1-509 TFPPLTTEHS GTYVCHVSNE LSSRDSQVDV DVL------- ---------- ENSP00000356991/1-510 GFPPLTTEHS GIYVCHVSNE FSSRDSQVTV DVL------- ---------- ENSBTAP00000023767/1-510 GFPTLTPEHS GTYVCRVSNA LSSRDSQVVV DVL------- ---------- bmy_06334T0/1-532 GFPPLTTEHS GTYVCHVSNE LSSRDSQVVV VVLEGQAEGV VWDVFCEDSA BACU003863/1-509 GFPPLTAEHS GTYVCHVSNE LSSRDSQVVV VVL------- ---------- 351 400 ENSTTRP00000008688/1-509 ---------- ---------- ----DPQDTT GKQVDLVSAS VVVVGVIAAL ENSP00000356991/1-510 ---------- ---------- ----DPQEDS GKQVDLVSAS VVVVGVIAAL ENSBTAP00000023767/1-510 ---------- ---------- ----DPEDAP GKQVDLVSAS VVVVGVIAAL bmy_06334T0/1-532 WGAVESGARS GIWASASDSG LSPADPQDAT GKQVDLVSAS VVVVGVIAAL BACU003863/1-509 ---------- ---------- ----DPQDAT GKQVDLVSAS VVVVGVIAAL 401 450 ENSTTRP00000008688/1-509 LFCLLVVVVV LMSRYHRRKA QQMTQKXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000356991/1-510 LFCLLVVVVV LMSRYHRRKA QQMTQKYEEE LTLTRENSIR RLHSHHTDPR ENSBTAP00000023767/1-510 LFCLLVVVVV LMSRYHRRKA QQMTQKYEEE LTLTRENSIR RLHSHHSDPR bmy_06334T0/1-532 LFCLLVVVVV LMSRYHRRKA QQMTQKYEEE LTLTRENSIR RLHSHHPDPK BACU003863/1-509 LFCLLVVVVV LMSRYHRRKA QQMTQKYEEE LTLTRENSIR RLHSHHPDPK 451 500 ENSTTRP00000008688/1-509 XXPEESVGLT AEGHPDGLKD NSSCSVMSEE AEGRSYSTLT TVREIETQTE ENSP00000356991/1-510 SQPEESVGLR AEGHPDSLKD NSSCSVMSEE PEGRSYSTLT TVREIETQTE ENSBTAP00000023767/1-510 NQPEESVGLR AEGHPDSLKD NSSCSVMSEE PEGRSYSTLT TVREIETQTE bmy_06334T0/1-532 NQPEESVGLR SEGHPDSLKD NSSCSVMSEE AEGRSYSTLT TVREIETQTE BACU003863/1-509 NQPEESVGLR AEGHPDSLKD NSSCSVMSEE AEGRSYSTLT TVREIETQTE 501 550 ENSTTRP00000008688/1-509 LLSPGSGRTE EEEDQDEGIK QAMNHFVQEN GTLRAKPTGN GIYINGRGHL ENSP00000356991/1-510 LLSPGSGRAE EEEDQDEGIK QAMNHFVQEN GTLRAKPTGN GIYINGRGHL ENSBTAP00000023767/1-510 LPSPGPGRAE EEEDRDEGIK QAMNHFVQEN GTLRAKPTGN GIYINGRGHL bmy_06334T0/1-532 LLSPGSGRTE EEEDQDEGIK QAMNHFVQQN GTLRAKPTGN GIYINGRGHL BACU003863/1-509 LLSPGSGRTE EEEDQDEGIK QAMNHFVQEN GTLRAKPTGN GIYINGRGHL 551 600 ENSTTRP00000008688/1-509 V ENSP00000356991/1-510 V ENSBTAP00000023767/1-510 V bmy_06334T0/1-532 V BACU003863/1-509 V