KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:21:35 2014 Check: 00 .. Name: ENSP00000371514/1-545 Len: 790 Check: 7943 Weight: 1.00 Name: ENSBTAP00000023770/1-566 Len: 790 Check: 3477 Weight: 1.00 Name: ENSTTRP00000006964/1-545 Len: 790 Check: 686 Weight: 1.00 Name: bmy_16396T0/1-784 Len: 790 Check: 7613 Weight: 1.00 Name: BACU019301/1-557 Len: 790 Check: 6523 Weight: 1.00 // 1 50 ENSP00000371514/1-545 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023770/1-566 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006964/1-545 ---------- ---------- ---------- ---------- ---------- bmy_16396T0/1-784 MAELKERDGT DFLQIGERGQ DHLIACVRLS LHSPTSYRQA GPISAQSSSL BACU019301/1-557 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000371514/1-545 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023770/1-566 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006964/1-545 ---------- ---------- ---------- ---------- ---------- bmy_16396T0/1-784 LFWRPGQRES LCSKYTEQKQ IHRDRDQREP WKTEENEMQK LGLARLDQST BACU019301/1-557 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000371514/1-545 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023770/1-566 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006964/1-545 ---------- ---------- ---------- ---------- ---------- bmy_16396T0/1-784 AVCLCVQTRQ AGLGWAAQGL RRDSSEGDAA DPRSAGPGRS LYNGAEHVIH BACU019301/1-557 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000371514/1-545 ---------- ---------- -----MLKQS ERRRSWSYRP WNTTENE--- ENSBTAP00000023770/1-566 ---------- ---------- -----MLKQT ERRRSWGQRS WGTTEGEDAA ENSTTRP00000006964/1-545 ---------- ---------- -----MLKQN ERRRSWGYKS WHTTESE--- bmy_16396T0/1-784 LPVAVSRLGT LPQPGGKSKG PLPPAMLKQN ERRRSWGYRS WHTTESEDAS BACU019301/1-557 ---------- ---------- -----MLKQN ERRRSWGYRS WHTAESEDAS 201 250 ENSP00000371514/1-545 ---GSQ-HRR SICSLGARSG SQASIHGWTE GNYNYYIEED EDG-EEEDQW ENSBTAP00000023770/1-566 QEVGSQSHRR SICSVGGRSG SQASIPPWIE GNYNYYIEED EDGEEEEELW ENSTTRP00000006964/1-545 ---GSQ-QRR RICSVGALPG SQTSFH-WTQ SYCSYYIDED TDT-EEDQQW bmy_16396T0/1-784 QAAGSQ-QRG SICSVGARLG SQASIPSWTE GNYNYYIEED EDG-EEEEQW BACU019301/1-557 QAVGSQ-QRR SICSVGTRLG SQASVPSWTE GNYNYYIDED EDGEEEEEQW 251 300 ENSP00000371514/1-545 KDDLA-EEDQ QAGEV--TTA KPE-GPSDPP ALLSTLNVNV GGHSYQLDYC ENSBTAP00000023770/1-566 KDEPAEEEDR QPGEAAATTE RAEGGGADTP LVSTTLNVNV GGHSYHLDYT ENSTTRP00000006964/1-545 KDDLA-EEDQ QPGEA--TTD QGE-GGTDAP VVSSTLNVNV GGQSYHLDYA bmy_16396T0/1-784 KDDPA-AEDQ QPGEA--TTN HGE-GGTDAP VVSSTLNVNV GGHSYHLEYA BACU019301/1-557 KDDLA-AEDQ QPGEA--TTN HGE-GSTDAP VVSSTLNVNV GGHSYHLEYA 301 350 ENSP00000371514/1-545 ELAGFPKTRL GRLATSTSRS RQLSLCDDYE EQTDEYFFDR DPAVFQLVYN ENSBTAP00000023770/1-566 ELACYPKTRL GRLATSTSRS RQLGLCDDYE VQTDEYFFDR DPEVFQLIYN ENSTTRP00000006964/1-545 ELASYPKTRL GRLATSTSRS RQLGLCDDYE AQTDEYFFDR DPEIFQLIYN bmy_16396T0/1-784 ELASYPKTRL GRLVTSTSRS RQLGLCDDYE AQTDEYFFDR DPEVFQLIYN BACU019301/1-557 ELASYPKTRL GRLVTSTSRS RQLGLCDDYE AQTDEYFFDR DPEVFQLIYN 351 400 ENSP00000371514/1-545 FYLSGVLLVL DGLCPRRFLE ELGYWGVRLK YTPRCCRICF EERRDELSER ENSBTAP00000023770/1-566 FYSSGVLLVR DELCPRSFLE ELGYWGVRLK YTPRCCRICF EERRDDLSEQ ENSTTRP00000006964/1-545 FYASGVLLVR DELCPRRFLE ELGYWGVRLK YAPRCCLICF EERRDELSEQ bmy_16396T0/1-784 FYASGVLLVR DELCPRCFLE ELGYWGVRLK YSPRCCLICF EERRDELSEQ BACU019301/1-557 FYASGVLLVR DELCPRCFLE ELGYWGVRLK YSPRCCLICF EERRDELCEQ 401 450 ENSP00000371514/1-545 LKIQHELRAQ AQVEEAEELF RDMRFYGPQR RRLWNLMEKP FSSVAAKAIG ENSBTAP00000023770/1-566 LKIQRELRAQ AQAEEAEELF QDMRFYGAQR RRLWNLMEKP FSSVAAKAIG ENSTTRP00000006964/1-545 LKIQRELRAQ AQAEEAEELF RDMRFYGPQR RRLWNLMEKP FSSVAAKAIG bmy_16396T0/1-784 LKIQRELRAQ AQAEEAEELF RDMRFYGPQR RRLWNLMEKP FSSVAAKAIG BACU019301/1-557 LKIQRELRAQ AQAEEAEX-X RDMRFYGPQR RRLWNFMEKP FSSVAAKAIG 451 500 ENSP00000371514/1-545 VASSTFVLVS VVALALNTVE EMQQHSGQGE GGPDLRPILE HVEMLCMGFF ENSBTAP00000023770/1-566 VASSLFVLIS VVALALNTVE EMQQQPERGE GGGNPRPFLE HVETLCMAFF ENSTTRP00000006964/1-545 VASSLFVLIS VVALALNTVE EMQQQTGQGA GSGNPQPFLE HVEMLCMAFF bmy_16396T0/1-784 VASSLFVLIS VVALALNTVE EMQQQAEQGA GGGNPRPFLE HVEMLCVAFF BACU019301/1-557 VASSLFVLIS VVALALNTVE EMQQQAEQGV GGGNPRPFLE HVEMLCMAFF 501 550 ENSP00000371514/1-545 TLEYLLRLAS TPDLRRFARS ALNLVDLVAI LPLYLQLLLE CFTGEGHQRG ENSBTAP00000023770/1-566 TLEFLLRLAS TPDLRRFARS ALNLVDLVAI LPLYLQLLLE CFTSEDQLHV ENSTTRP00000006964/1-545 TLEFLLRLAS TPDLRRFAQS ALNLVDLVAI LPLYLQLLLE CFTSEDH--- bmy_16396T0/1-784 TLEFLLRLAS TPDLRRFAQS ALNLVDLVAI LPLYLQLLLE CFTNEDQVRG BACU019301/1-557 TLEFLLRLAS TPDLRRFAQS ALNLVDLVAI LPLYLQLLLE CFTSEDQVRG 551 600 ENSP00000371514/1-545 ---------Q TVGSVGKVGQ VLRVMRLMRI FRILKLARHS TGLRAFGFTL ENSBTAP00000023770/1-566 KGSPREHDLE TMGRVGKVGQ VLRVMRLLRI FRILKLARHS TGLRAFGFTL ENSTTRP00000006964/1-545 -----EHDLE TMGRVGQVGQ VLRVMRLLRI FRILKLARHS TGLRAFGFTL bmy_16396T0/1-784 KGSLHEHDLE TMGRVGQVGQ VLRVMRLLRI FRILKLARHS TGLRAFGFTL BACU019301/1-557 KGSLHEHDLE TMGRV---GQ VLRVMRLLRI FRILKLARHS TGLRAFGFTL 601 650 ENSP00000371514/1-545 RQCYQQVGCL LLFIAMGIFT FSAAVYSVEH DVPSTNFTTI PHSWWWAA-- ENSBTAP00000023770/1-566 RQCYQQVGCL MLFITMGILT FAAAVYSVEH DVQGTNFTSI PHAWWWAA-- ENSTTRP00000006964/1-545 RQCYQQVGCL LLFITMGIFT FSAAVYSVEH DVRGTNFTSI PHAWWWAA-- bmy_16396T0/1-784 RQCYQQVGCL LLFITMGIFT FSEAVYSVEH DVRGTNFTSI PHAWWWAAGE BACU019301/1-557 RQCYQQVGCL LLFITMGIFT FSEAVYSVEH DVRGTNFTSI PHAWWWAA-- 651 700 ENSP00000371514/1-545 ---------- ---------- ---------- ---------- -------VSI ENSBTAP00000023770/1-566 ---------- ---------- ---------- ---------- -------VSI ENSTTRP00000006964/1-545 ---------- ---------- ---------- ---------- -------VSI bmy_16396T0/1-784 MVWPVERGEK VSKSQGIQSS SGAKKQEADH RPRSYFITAS HGPLVEKVSI BACU019301/1-557 ---------- ---------- ---------- ---------- -------VSI 701 750 ENSP00000371514/1-545 STVGYGDMYP ETHLGRFFAF LCIAFGIILN GMPISILYNK FSDYYSKLKA ENSBTAP00000023770/1-566 STVGYGDMYP ETHLGRLFAF LCIAFGIILN GMPISILYNK FSDYYSKLKA ENSTTRP00000006964/1-545 STVGYGDMYP ETHLGRLFAF LCIAFGIILN GMPISILYNK FSDYYSKLKA bmy_16396T0/1-784 STVGYGDMYP ETHLGRLFAF LCIAFGIILN GMPISILYNK FSDYYSKLKA BACU019301/1-557 STVGYGDMYP ETHLGRLFAF LCIAFGIILN GMPISILYNK FSDYYSKLKA 751 800 ENSP00000371514/1-545 YEYTTIRRER GEVNFMQRAR KKIAECLLGS NPQLTPRQEN ENSBTAP00000023770/1-566 YEYTAIRRER GNVEFLQRAG KKIAECLAGS NSQATPRLNS ENSTTRP00000006964/1-545 YEYTAIRRER GNVEFMQRAR KKIAECLAGS NPQPNPRQNH bmy_16396T0/1-784 YEYTAIRRER GNVEFMQRAR KKIAECLAGS NPQPNPRQNN BACU019301/1-557 YEYTAIRRER GNVEFMQRAR KKIAECLAGS NPQPNPRQNN