KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:21:42 2014 Check: 00 .. Name: BACU006769/1-737 Len: 752 Check: 3474 Weight: 1.00 Name: bmy_10391T0/1-553 Len: 752 Check: 8192 Weight: 1.00 Name: ENSTTRP00000008341/1-746 Len: 752 Check: 3539 Weight: 1.00 Name: ENSP00000346466/1-747 Len: 752 Check: 4924 Weight: 1.00 Name: ENSBTAP00000023798/1-746 Len: 752 Check: 2745 Weight: 1.00 // 1 50 BACU006769/1-737 MTKPLPALPE NPGGQC---- FFHSLLDLGD GIAGRGRGGA TDARRAVDKI bmy_10391T0/1-553 MAEAVERTDE LVREYLLFRG FTHTLRQLDA EIKADKEKGF R-----VDKI ENSTTRP00000008341/1-746 MAEAVERTDE LVREYLLFRG FTHTLRQLDA EIKADKEKGF R-----VDKI ENSP00000346466/1-747 MAEAVERTDE LVREYLLFRG FTHTLRQLDA EIKADKEKGF R-----VDKI ENSBTAP00000023798/1-746 MAEAVERTDE MVREYLLFRG FTHTLRQLDA EIKADKEKGF R-----VDKI 51 100 BACU006769/1-737 VDQLQQLMQV YDLAALRDYW NYLERRLFSR LEDMYRPTIN KLKTSLFRFY bmy_10391T0/1-553 VDQLQQLMQV YDLAALRDYW NYLERRLFSR LEDMYRPTIN KLKTSLFRFY ENSTTRP00000008341/1-746 VDQLQQLMQV YDLAALRDYW NYLERRLFSR LEDMYRPTIN KLKTSLFRFY ENSP00000346466/1-747 VDQLQQLMQV YDLAALRDYW SYLERRLFSR LEDIYRPTIH KLKTSLFRFY ENSBTAP00000023798/1-746 VDQLQQLMQV YDLAALRDYW NYLERRLFSR LEDVYRPTIN KLKTSLFRFY 101 150 BACU006769/1-737 LVYTIQTNRN DKAQEFFAKQ ATELQNQAEW KDWFVLPFLP SPDTNPIFAA bmy_10391T0/1-553 LVYTIQ---- ---------- ---------- ---------- ---------- ENSTTRP00000008341/1-746 LVYTIQTNRS DKAQEFFAKQ ATELQNQAEW KDWFVLPFLP SPDTNPIFAT ENSP00000346466/1-747 LVYTIQTNRN DKAQEFFAKQ ATELQNQAEW KDWFVLPFLP SPDTNPTFAT ENSBTAP00000023798/1-746 LVYTIQTNRS DKAQEFFAKQ ASELQNQAEW KDWFVLPFLP SPDTNPTFAT 151 200 BACU006769/1-737 YFSRQWADTF IVSLHNFLSV LFQCMHILSA ARGWGPRLRQ PDS------- bmy_10391T0/1-553 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008341/1-746 YFSRQWADTF IVSLHNFLSV LFQCMXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000346466/1-747 YFSRQWADTF IVSLHNFLSV LFQCMPVPVI LNFDAECQRT NQVQEENEVL ENSBTAP00000023798/1-746 YFSRQWADTF IVSLHNFLSV LFQCMPVPVI LNFDAECQRT NQVQEENEVL 201 250 BACU006769/1-737 ---LFALQAE IHRLKKEEQQ PEEEEALVQH RLPSYVSNMD RLGDSELAMV bmy_10391T0/1-553 ---LFALQAE IHRLKKEEQQ PEEEEALVQH RLPSYVSNMD RLGDSELAMV ENSTTRP00000008341/1-746 XXXLFALQAE IHRLKKEEQQ PEEEEALVQH RLPSYVSNMD RLGDSELAMV ENSP00000346466/1-747 RQKLFALQAE IHRLKKEEQQ PEEEEALVQH KLPPYVSNMD RLGDSELAMV ENSBTAP00000023798/1-746 RQKLFALQAE IHRLKKEEQQ PEEEEALVQH KLPPYVSNMD RLGDSELAMV 251 300 BACU006769/1-737 CSQRNASLSQ SPRVGFLSSL LPQSKKSPSR LLPAQAPPQA QSSARKESSG bmy_10391T0/1-553 CSQRNASLSQ SPRVGFLSSL LPQSKKSPSX LLPAQAPPQA QSSARKESSG ENSTTRP00000008341/1-746 CSQRNASLSQ SPRVGFLSSL LPQSKKSPSR LLPAQAPPQA QSSAKKESFG ENSP00000346466/1-747 CSQRNASLSQ SPRVGFLSSL LPQSKKSPSR LSPAQGPPQP QSSAKKESFG ENSBTAP00000023798/1-746 CSQRNASLSQ SPRVGFLSSL LPQSKKSPSR LSPAQGPPQT QSSAKKESFG 301 350 BACU006769/1-737 GQSTKGREPA CAPKDGKSLF SGLATGESSW SQHRQRRLQD HGKERKELFS bmy_10391T0/1-553 GQSTKGREPA CAPKDGKILF SGLATGESSW SQHRQRRLQD HGKERKELFS ENSTTRP00000008341/1-746 GQSTKGREPA CAPKDGKSLF SGLATGESSW SQHRQRRLQD HGKERKELFS ENSP00000346466/1-747 GQGTKGKDPT SGAKDGKSLL SGLATGESGW SQHRQRRLQD HGKERKELFS ENSBTAP00000023798/1-746 SQTTKGREPA GAPKDGKSLF GGLAPGESSW SQHRQRRLQD HGKERKELLS 351 400 BACU006769/1-737 MTL-QCAEKK PEAGGPEAEP CPELHVEVLE TLTRAPTAGA EGGGVRPEQP bmy_10391T0/1-553 MTL-QCAEKK PEAGGPEAEP CPELHVEVLE TLTRAPTAGP EGGGVRPEQP ENSTTRP00000008341/1-746 MTL-QCAEKK PEAGGPEAEP CPELHVEVLE TLARAPAAGP EGGGVRPEQP ENSP00000346466/1-747 TTTSQCAEKK PEASGPEAEP CPELHTEPVE PLTRASSAGP EGGGVRPEQP ENSBTAP00000023798/1-746 MTL-QCAEKK PEAGGPEAEP CPEPHVEALE TLTRVPTAGP EGGGVRPEQP 401 450 BACU006769/1-737 FIVLGQEEYG EHHSSIMHCR VDCSGRRVAS LDVDGVIKVW SFNPIMQTKA bmy_10391T0/1-553 FIVLGQEEYG EHHSSIMHCR VDCSGRRVAS LDVDGVIKVW SFNPIMQTKA ENSTTRP00000008341/1-746 FIVLGQEEYA EHHSSIMHCR VDCSGRRVAS LDVDGVIKVW SFNPIMQTKA ENSP00000346466/1-747 FIVLGQEEYG EHHSSIMHCR VDCSGRRVAS LDVDGVIKVW SFNPIMQTKA ENSBTAP00000023798/1-746 FIVLGQEEYG EHHSSIMHCR VDCSGRRVAS LDVDGVIKVW SFNPIMQTKA 451 500 BACU006769/1-737 SSISKSPLLS LEWATKRDRL LLLGSGVGTV RLYDTEAKKN LCEISINDDM bmy_10391T0/1-553 SSISKSPLLS LEWATKRDRL LLLGSGVGTV RLYDTEAKKN LCEISINDDM ENSTTRP00000008341/1-746 SSISKSPLLS LEWATKRDRL LLLGSGVGTV RLYDTEAKKN LCEISINDDM ENSP00000346466/1-747 SSISKSPLLS LEWATKRDRL LLLGSGVGTV RLYDTEAKKN LCEININDNM ENSBTAP00000023798/1-746 SSISKSPLLS LEWATKRDRL LLLGSGVGTV RLYDTEAKKN LCEININDDM 501 550 BACU006769/1-737 PRILSLACSP SGASFICSAA APSLAAQVDL SAPDIGSKGT NQVPGKLLLW bmy_10391T0/1-553 PRILSLACSP SGASFVCSAA APSLAAQVDL SAPDIGSKGT NQVPGKLLLW ENSTTRP00000008341/1-746 PRILSLACSP SGASFVCSAA APSLAAQVDL SAPDIGSKGT NQVPGKLLLW ENSP00000346466/1-747 PRILSLACSP NGASFVCSAA APSLTSQVDF SAPDIGSKGM NQVPGRLLLW ENSBTAP00000023798/1-746 PRILSLACSP SGASFVCSAA ASSLTAHVDV LAPDIGSRGT NQVPGRLLLW 551 600 BACU006769/1-737 DTKTMKQQLQ FSLDPEPIAV NCTAFNHNGN LLVTGAADGV LRLFDMQQHE bmy_10391T0/1-553 DTKTMKQQWR LIAS------ ---------- ---------- ----DMQQHE ENSTTRP00000008341/1-746 DTKTMKQQLQ FSLDPEPIAI NCTAFNHNGN LLVTGAADGV IRLFDMQQHE ENSP00000346466/1-747 DTKTMKQQLQ FSLDPEPIAI NCTAFNHNGN LLVTGAADGV IRLFDMQQHE ENSBTAP00000023798/1-746 DTKTMKQQLQ FSLDPEPIAI NCTAFNHNGN LLVTGAADGV IRLFDMQQHE 601 650 BACU006769/1-737 CAMSWKAHCG EVYSVEFSYD ENTVYSIGED GKFIQWNIHK SGLKVSEYGL bmy_10391T0/1-553 CAMSWKAHCG EVYSVEFSYD ENTVYSIGED G--------- ---------- ENSTTRP00000008341/1-746 CAMSWKAHCG EVCSVEFSYD ENTVYSIGED GKFIQWNIHK SGLKVSEYGL ENSP00000346466/1-747 CAMSWRAHYG EVYSVEFSYD ENTVYSIGED GKFIQWNIHK SGLKVSEYSL ENSBTAP00000023798/1-746 CAMSWKAHCG EVYSVEFSYD ENTVYSIGED GKFIQWNIHK SGLKVSEYGL 651 700 BACU006769/1-737 PADATGPFVL SGYSGYKQVQ VPRGRLFAFD SEGNYMLTCS ATGGVIYKLG bmy_10391T0/1-553 ---------- ---------- ---------- ---------- -------KLG ENSTTRP00000008341/1-746 PTDATGPFVL SGYSGYKQVQ VPRGRLFAFD SEGNYMLTCS ATGGVIYKLG ENSP00000346466/1-747 PSDATGPFVL SGYSGYKQVQ VPRGRLFAFD SEGNYMLTCS ATGGVIYKLG ENSBTAP00000023798/1-746 PADATGPFVL SGYSGYKQVQ VPRGRLFAFD SEGNYMLTCS ATGGVIYKLG 701 750 BACU006769/1-737 GEEKVLESCL SLGGHRAPVV TVDWSTAVDC GTCLTASMDG KIKLTTLLAH bmy_10391T0/1-553 GEEKVLESCL SLGGHRAPVV TVDWSTAVDC GTCLTASMDG KIKLTTLLAH ENSTTRP00000008341/1-746 GEEKVLESCL SLGGHRAPVV TVDWSTAVDC GTCLTASMDG KIKLTTLLAH ENSP00000346466/1-747 GDEKVLESCL SLGGHRAPVV TVDWSTAMDC GTCLTASMDG KIKLTTLLAH ENSBTAP00000023798/1-746 GDDKVLESCV SLGGHRAPVV TVDWSTAMDC GTCLTASMDG KIKLTTLLAH 751 800 BACU006769/1-737 KV bmy_10391T0/1-553 KV ENSTTRP00000008341/1-746 KV ENSP00000346466/1-747 KA ENSBTAP00000023798/1-746 KV