KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:21:43 2014  Check: 00 ..

 Name: ENSP00000358501/1-250     Len:    272  Check:  3821  Weight:  1.00
 Name: ENSBTAP00000023836/1-260  Len:    272  Check:  5047  Weight:  1.00
 Name: BACU002675/1-202          Len:    272  Check:  1438  Weight:  1.00
 Name: ENSTTRP00000012730/1-248  Len:    272  Check:  8518  Weight:  1.00
 Name: bmy_10615T0/1-243         Len:    272  Check:  552  Weight:  1.00

//


                          1                                                   50
ENSP00000358501/1-250     ---------- -----MVAGS DAGRALGVLS VVCLLHCFGF ISCFSQQIYG 
ENSBTAP00000023836/1-260  ELCGCEPLAE TARTAMAAGS APGWALGVLG VVYLFLKLDF ISC-SQEIYG 
BACU002675/1-202          ---------- -----MAAGS APGWAVGALG VVCLLLQLDF ISCDSQVIYG 
ENSTTRP00000012730/1-248  ---------- -----MAAGS AAGWAVGALG VVCLLLRLDF ISCDSQVIYG 
bmy_10615T0/1-243         ---------- -----MAAGS APGWAVGALG VVCLLLRLDF ISCDSQVIYG 


                          51                                                 100
ENSP00000358501/1-250     VVYGNVTFHV PSNVPLKEVL WKKQKDKVAE LEN-SEFRAF SSFKNRVYLD 
ENSBTAP00000023836/1-260  AMNGNVTFYV SKFHPSTEII WKKEKNKVVE WDIQSGLEAF QSFKDRVYLD 
BACU002675/1-202          AVNKNVTLYA SSFKPFKEIV WKRGKDKVVE WDDQSEVRAF LSFKDRVHLD 
ENSTTRP00000012730/1-248  AVNKSVTLYT SSFKPFKEIV WKRGKDKVVE WDDQSEVRAF LSFKDRVYLD 
bmy_10615T0/1-243         AVNKNVTLYA SSFKPFKEIV WKRGKDKVVE WDDQSEVRAF LSFKDRVKLD 


                          101                                                150
ENSP00000358501/1-250     TVSGSLTIYN LTSSDEDEYE MESPNITDTM KFFLYVLESL PSPTLTCALT 
ENSBTAP00000023836/1-260  IGSGNLTITR LTKSDEGLYE LESPGVRNKS EFHLKVIAPP PSPSTFCSLS 
BACU002675/1-202          TVSGNLTIFK LTQSDEDEYG IESPSVRNNS KFTLKVIESL PSPTLSCALT 
ENSTTRP00000012730/1-248  TVSGNLTIDK LTPSDEDEYG IESPSVRNNT KFTLRVIESL PSPTL-CT-T 
bmy_10615T0/1-243         IVSGNLTIFK LTRSDEDEYG IESPSVRNNS KFTLKVIESL PSPALSCTLT 


                          151                                                200
ENSP00000358501/1-250     -NGSIEVQCM IPEH-YNSHR GLIMYSWDCP ME-QCKRNS- -TSIYF-KME 
ENSBTAP00000023836/1-260  DDGNITLTCE IMEAGYDIDG NLLQYSWECP PTVQCHRGLS PSEAYV-LKK 
BACU002675/1-202          -DGNITLQCV ILEA-YDTHV ELIQYSWDCP STIQCQSGSK PSEAFSETPI 
ENSTTRP00000012730/1-248  -DGNITLQCM ILED-YNTHL ELIPYSWDCP STIQCQSGSK PSEAYV-TEE 
bmy_10615T0/1-243         -DGNITLQCM ILEA-YDTHL ELIQYSWDCP STIQCQSGSK PSEAYV-TKE 


                          201                                                250
ENSP00000358501/1-250     NDLPQKIQCT LSNPLFNTTS SIILTTCIPS SGHSRHRYAL IPIPLAVITT 
ENSBTAP00000023836/1-260  SDLSQNVQCI VSNPLFRTSA SISLSTCVPE D-NTRHRYVL FAILPAVI-- 
BACU002675/1-202          ADKHRELDDK ADD------- -------LPK D-VQ------ ---------- 
ENSTTRP00000012730/1-248  GDLSQEIQCI ISNPLFRRTT SVILSTCVPS --KTRHRFVL FAILPALI-- 
bmy_10615T0/1-243         GDLSQEIQCI ISNPLFRRTA SIILSTCVPS D-NTRHRFVL LVILPVLI-- 


                          251                                                300
ENSP00000358501/1-250     CIVLYMNGIL KCDRKPDRTN SN 
ENSBTAP00000023836/1-260  CGLLFLKCFL GRHSQ----- -- 
BACU002675/1-202          ---------- ---------- -- 
ENSTTRP00000012730/1-248  GGLLFLKCFL GRSRTRRTST CC 
bmy_10615T0/1-243         CGLLFIKCTY TFFF------ --