KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:21:45 2014 Check: 00 .. Name: ENSTTRP00000000986/1-1214 Len: 1288 Check: 9444 Weight: 1.00 Name: ENSBTAP00000023854/1-1216 Len: 1288 Check: 699 Weight: 1.00 Name: bmy_19534T0/1-1250 Len: 1288 Check: 2706 Weight: 1.00 Name: BACU018431/1-1172 Len: 1288 Check: 5146 Weight: 1.00 // 1 50 ENSTTRP00000000986/1-1214 MSPAASAAGG GDRRRPLASV RDGRGRGWGC GGPAGAALLV LSLLGLVLYL ENSBTAP00000023854/1-1216 MSPAATAAGG GNRRRPIASV RE--GRGWGC GRPAGAALLG LSLLGLVLYL bmy_19534T0/1-1250 MSPPAAAAGG GDRRRPLASV RDGRGRGWGC GGPAGAALLV LSLLGLVLYL BACU018431/1-1172 ---------- ---------- ---------- ---------- ---XGLVLYL 51 100 ENSTTRP00000000986/1-1214 VPAAAALAWL AVGATAAWWG LSREPRGSRA F-SLVRNARR QRTLLASPPA ENSBTAP00000023854/1-1216 VPAAAALAWL AVGATAAWWG LSREPRGSRA LSSLVWNARR QRTLLASPPA bmy_19534T0/1-1250 VPAAAALAWL AVGATAAWWG LSREPRGSRA F-SLVRNARR QRTLLASPPA BACU018431/1-1172 VPAAAALAWL AVGATAAWWG LSREPRGSRA F-SLVRNARR QRTLLASPPA 101 150 ENSTTRP00000000986/1-1214 KSAVNGNLLE PRSLLEGPDP AELLLLGSYL GKPGPPQPAP APESKDLRER ENSBTAP00000023854/1-1216 KSAANGNLLE PRSPLEGPDP AELLLMGSYL GKPGPPQPAP APEARDLRER bmy_19534T0/1-1250 KSAVNGNLLE PRSLLEGPDP AELLLLGSYL GKPGPPQPAP APESRDLRER BACU018431/1-1172 KSAVNGNLLE PRSLLEGPDP AELLLLGSYL GKPGPPQPAP APESRDLRER 151 200 ENSTTRP00000000986/1-1214 SGRRPPARTA PPLSPPFPWR QAYYLPXXXX XXXXXXXXXX XXXXDCGTLS ENSBTAP00000023854/1-1216 PGRRPPVRTA SPAPSAHPQR VQVH---PSL PTSLLRPSRR PSYRDCGTLS bmy_19534T0/1-1250 PGRRPPARTA PPAQSAHPRG VQVH---SFL PTPLLRSSRR PSHRDCGTLS BACU018431/1-1172 PGRRPPARTA PPAQSAHPRG VQVH---PFL PTPLLRSSRR PSHRDCGTLS 201 250 ENSTTRP00000000986/1-1214 HRFVITPRRR YPIQQTQYSL LGVLPTVCWN GYHKKTVLSA RNSKMVCSPV ENSBTAP00000023854/1-1216 HRFVVTPRRR YPIQQAQYSL LGVLPTVCWN GCHKKTVLSA RNSRMVCSPV bmy_19534T0/1-1250 HRFVITPRRR YPIQQTQYSL LGVLPTVCWN GYHKKTVLSA RNSKMVCSPV BACU018431/1-1172 HRFVITPRRR YPIQQTQYSL LGVLPTVCWN GYHKKTVLSA RNSKMVCSPV 251 300 ENSTTRP00000000986/1-1214 TVRIAPPDSK LTRSPIREQI INSTLSSPST SAPDPCAKET VLNALKERKK ENSBTAP00000023854/1-1216 TVRIAPPDSK LARSPVPEQM INSTLSSPST SAPDPCAKET VLNALKERKK bmy_19534T0/1-1250 TVRIAPPDSK LTRSPIREQV INSTLSSPST SAPDPCAKET VLNALKERKK BACU018431/1-1172 TVRIAPPDSK LTRSPIREQV INSTLSSPST SAPDPCAKET VLNALKERKK 301 350 ENSTTRP00000000986/1-1214 RTVEEEDQIF ADGQENKRRR HDSSGSGHSA FEPLVANGVP ASFVPKPGSL ENSBTAP00000023854/1-1216 RTVGEEDQMS ADGQENKRRR HDSSGSGHSA FEPLVANGVP ASFVPKPGSL bmy_19534T0/1-1250 RTVEEEDQIF ADGQENKRRR HDSSGSGHSA FEPLVANGVP ASFVPKPGSL BACU018431/1-1172 RTVEEEDQIF ADGQENKRRR HDSSGSGHSA FEPLVANGVP ASFVPKPGSL 351 400 ENSTTRP00000000986/1-1214 KRGLNSQSSD DHSNKRSRTS SMSSLT-STY TGGIPSSSRN AIASSYSSTR ENSBTAP00000023854/1-1216 KRGLNSQNSD DHLNKRSRTS SVSSLTSSTC TGGIPSSSRN AIASSYSSTR bmy_19534T0/1-1250 KRGLNSQSSD DHSNKRSRTS SMSSLT-STY TGGIPSSSRN AITSSYSSTR BACU018431/1-1172 KRGLNSQSSD DHSNKRSRTS SMSSLT-STY TGGIPSSSRN AITSSYSSTR 401 450 ENSTTRP00000000986/1-1214 GLFQLWKRSG PGSSPF---- SSPASSRSQ- -------TPE ---------- ENSBTAP00000023854/1-1216 GLSQLWKRSG PSSSPF---- SSPASSRSQ- -------TPE ---------- bmy_19534T0/1-1250 GLSQAPSKEA EMKTDYLCYH GTPLGEETDA WIIITINTTD AAKVIDVMIV BACU018431/1-1172 GLSQLWKRSG PSSSPF---- SSPASSRSQ- -------TPE ---------- 451 500 ENSTTRP00000000986/1-1214 --RPAKKIRE EELSHHSSSS TPLVTDKESQ GEKXXXXXXX XXXXXXXXXX ENSBTAP00000023854/1-1216 --RPAKKVRE EELSHHSSSS TPLVTDKESQ GEKIADPTTG KKQNSWNSPS bmy_19534T0/1-1250 YFKKIKLIKE EELSHHSSSS TPLVTDRESQ GEKVADKTTW KKQNSWNSPS BACU018431/1-1172 --RPAKKIRE EELSHHSSSS TPLVTDKESQ GEK------- ------GSVA 501 550 ENSTTRP00000000986/1-1214 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX X--------- ENSBTAP00000023854/1-1216 TPGSSGQRKR KVQLLPSRRG DQLTL-PPPP QLGYSITAED L--------- bmy_19534T0/1-1250 TPGSSGQRKR KVQLLPSRRG DQLTL-PPPP QLGYSITAED L--------- BACU018431/1-1172 ALQARG---- -----PADLG MVLSIYLCPP QLNSVLGRLN IGFFQFLLID 551 600 ENSTTRP00000000986/1-1214 -------XXX XXXXXXX--- ---XXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000023854/1-1216 ----DLEKKA SLQWFNK--- ---VLEDKTD AASTSVTEAP PAGQSSFTLT bmy_19534T0/1-1250 ----DLEKKA SLQWFNK--- ---VLEDKTD TASDSVTENP PTSQSSFTFT BACU018431/1-1172 NFFFSLVAST SPAWIPKQGR TMSSFLSSLD AASDSVTENA PTSQSSFTFT 601 650 ENSTTRP00000000986/1-1214 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000023854/1-1216 LPAAGTASSP TTLQAPSANP LLESLKKMQN SPGLPSLPEP AGVTSTVADS bmy_19534T0/1-1250 LPAAGTASSP ASLPAPSTNP LLESLKKMQN SPGLPSLPES AGVATTVAHS BACU018431/1-1172 LPAAGTASSP TSLPAPSTNP LLESLKKMQN SPGLPSLPES AGVATTVAHS 651 700 ENSTTRP00000000986/1-1214 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000023854/1-1216 PPKTPSPLAS LSSSQSGALP ATSSDSRSTT TVLGLTPASS PGPVTDAAKS bmy_19534T0/1-1250 PPKTPSPLAP PGSSESAPLP GTSSDSKSTT TFLGLTPAAS PGPVTDATKS BACU018431/1-1172 PPKTPSPLAP PGSSESAPLP GTSSDSKSTT TFLGLTPASS PGPVTDATKS 701 750 ENSTTRP00000000986/1-1214 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000023854/1-1216 PPAPSAETST KSQALSTPPP SPKQSILFGM LSTPAANPPA SVAPAASSAS bmy_19534T0/1-1250 PPDPQAETSA KSQAPSAPSP SPKQTILFGM LSTPPANPPA SVAPAVSSAS BACU018431/1-1172 PPDPQAETSA KSQAPSAPSP SPKQSILFGM LSTPPAKPPA SVAPAVSSAS 751 800 ENSTTRP00000000986/1-1214 XXXXXIFVVP LKSENEGPLP SSL-TVTAAA SSSSAVPMTT SSPPLTFKPI ENSBTAP00000023854/1-1216 PMFRPIFVAP LKSESGDPLP SSPSTVTAVT SSSSALPTTA SSTAPAFKPI bmy_19534T0/1-1250 PMFKPIFAVP PKSENEGPLP SSPSKVTAAA SSSSAIPTTT SSPPLTFKPI BACU018431/1-1172 PMFKPIFVVP PKSENEGPLP SGPSKVTAAA SSSSAIPTTT SSPPLTFKPI 801 850 ENSTTRP00000000986/1-1214 FSNMGPRASV PMLTPFSLKQ TATPATTTSA PLFSGQAGAT SAVVSMTTAS ENSBTAP00000023854/1-1216 FSSVGPPTSV PGLTPF-LKQ TATLATTTSA PLFTGQATAT STVTSVTTAS bmy_19534T0/1-1250 FSNMGPPASV PMLTPFSFKQ TATPATSTSA PLFSGQASAT SAVVSMTTAS BACU018431/1-1172 FSNMGPPASM PMLTPFSFKQ TATPATSTSA PLVSGQASAT SAVVSMTTAS 851 900 ENSTTRP00000000986/1-1214 ASADSAPKPA FSFGVRTATS TPSSVTSTTA SASQPFLFGT PPASGASFTP ENSBTAP00000023854/1-1216 TSTDSAPKPS FSFGVSSVTS TLSSVTSTTA SASQPFLFGT PPTSGASFTP bmy_19534T0/1-1250 TSADSAPKPA FSFGVCTVTS TLGSVTSTTA SASQPFLFGT PPASGASFTP BACU018431/1-1172 TSADSAPKPA FSFGVCTVTS TLGSVTSTTT SASQPFLFGT PPASGASFTP 901 950 ENSTTRP00000000986/1-1214 AVGPIFQFGK PPAMPASTAV ATFGQSLPSA ---APAASSS STASFSGFGS ENSBTAP00000023854/1-1216 AGGSIFQFGK PPAMPASTSV TTFGQSLPSA PQTAPSSSSS SSTGFGGFGS bmy_19534T0/1-1250 AVGPIFQFGK PPAMPASTAV ATFGQSLPSA AQTAPSSSSS STSSFSGFGS BACU018431/1-1172 AVGPIFQFGK PPAMPASTAV ATFGQSLPSA AQTAPSSGSS STSSFSGFGG 951 1000 ENSTTRP00000000986/1-1214 TLTASAPVSS SQPTLTFSSA TAPAFNIPFG PSAKPPPPSY PGANPQPAFG ENSBTAP00000023854/1-1216 SLSTSAPATT GQPTLTFSST TTPAFNIPFA SGAKPPLPSY PGANPQPTFG bmy_19534T0/1-1250 TLTASAPVTS SQPTLTFSST TAPAFNIPFG SSAKPPLPSY PGANPQPAFG BACU018431/1-1172 TLTASAPVTG SQPTLTFSST TAPAFNIPFG SSAKPPLPSY PGANPQPAFR 1001 1050 ENSTTRP00000000986/1-1214 AADGQQQGAA KSTPVPSFGS SFTFGNSAAP APTAAPAPAP AQPAFGGTAQ ENSBTAP00000023854/1-1216 AAEGQPQGAA KPALVPSFGS SFTFGNSAAP APTATPAPTP AQPAFGGAAQ bmy_19534T0/1-1250 AVDGQQQGAA KSALVPSFGS SFTFGNSAAP APTAAPAPTP AQPAFGGTTQ BACU018431/1-1172 AVEGQQQGAA KSALVPSFGS SFTFGNSEAR APTAAPAPTP AQPAFGGTAQ 1051 1100 ENSTTRP00000000986/1-1214 SAFSGLKATA SAFGTPASTQ PAFGGTTAAF SFGAATTSGF GATTQTASSG ENSBTAP00000023854/1-1216 PAFGSLKATP SAFGTSATTR PAFGSATAVF SFGAATTSGF GATTQTTSSG bmy_19534T0/1-1250 SAFSGLKATA SAFGTPASTQ PAFGGTTAAF SFGAATTSGF GATTQTASSG BACU018431/1-1172 SAFSGLKATA SAFGTPASTQ PAFGGTTAAF SFGAATTSGF GATTQTASSG 1101 1150 ENSTTRP00000000986/1-1214 TSSSVFGSTT PSPFTFGGPA APAGGGGFGI SAATPGTSSA SGAFGFGAGQ ENSBTAP00000023854/1-1216 TSGSVFGGTT PSPFMFGGPA TLAGSGAFGM SVATPGTGAA SGAFGFGAGQ bmy_19534T0/1-1250 TSSSVFGSTT PSPFTFGGSA APAGGGGFGI SAATPGTSSA SGAFGFGAGQ BACU018431/1-1172 TSSSVFGSTT PSPFTFGGSA APAGGGGFGI SAATPGTSSA SGAFGFGAGQ 1151 1200 ENSTTRP00000000986/1-1214 SGTTGSTTPF GGGLSQNSLG APSQGTPFAF NVASTPDSKP VFGGTSTPAF ENSBTAP00000023854/1-1216 SGATGSTAPF GGGLSQNSLG TPSQTTSFAF SVTSTPDSKP VFGGTSTPTF bmy_19534T0/1-1250 SGTTGSTTPF GGGLSQNSLG APSQSTPFAF NAPPHP---P LV-------- BACU018431/1-1172 SGTTGSTTPF GGGLSQNSLG APSQSTPFAF NVASTPDSKP VFGGTSTPAF 1201 1250 ENSTTRP00000000986/1-1214 GQNTPAP-GV GASGSSLSFG ASSTPAQGFV GVGPFGSAAP SFSIGAGSKT ENSBTAP00000023854/1-1216 GQNTPAP-GV GAAGSSLSFG ASSTPAQGFV GVGPFGSTAP SFSIGAGSKT bmy_19534T0/1-1250 --RTPLPLGW AHQAAASPLG RPQHPPKALS ELDLSDRRPP PFPLVRDPRP BACU018431/1-1172 GQNTPAP-GV GASGSSLSFG ASSTPAQGFV GVGPFGSATP SFSIGAGSKT 1251 1300 ENSTTRP00000000986/1-1214 PG-------- ----ARQRLQ ARRQHTRKK- -------- ENSBTAP00000023854/1-1216 PG-------- ----ARQRLQ ARRQHTRKK- -------- bmy_19534T0/1-1250 QGLDSDCRPE GSTPARNSLC PCPTHPRHPC PNLDLSTC BACU018431/1-1172 PG-------- ----ARQRLQ ARRQHTRKK- --------