KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:21:48 2014 Check: 00 .. Name: ENSP00000356774/1-1196 Len: 1205 Check: 9965 Weight: 1.00 Name: ENSBTAP00000023877/1-1142 Len: 1205 Check: 3719 Weight: 1.00 Name: ENSTTRP00000004810/1-1168 Len: 1205 Check: 10 Weight: 1.00 Name: bmy_12337T0/1-656 Len: 1205 Check: 8627 Weight: 1.00 Name: BACU014329/1-871 Len: 1205 Check: 4798 Weight: 1.00 // 1 50 ENSP00000356774/1-1196 MPTAESEAKV KTKVRFEELL KTHSDLMREK KKLKKKLVRS EENISPDTIR ENSBTAP00000023877/1-1142 MPTVESEAKV KTKVRFEELL KAHNDLRRER KKLKKKIAQP GEKISMDVMY ENSTTRP00000004810/1-1168 -PRIESEAKV KTKVRFEELL KAHNDLIRER RKLKKKIGKS GEKIS----- bmy_12337T0/1-656 ---------- ---------- ---------- ---------- ---------- BACU014329/1-871 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000356774/1-1196 SNLHYMKET- TSDDPDTIRS NLPHIKETTS DDVSAANTNN LKKSTRVTKN ENSBTAP00000023877/1-1142 RDLYYLPDKR TSLNLDAVTS NLQKIRETKS DDITAANTKN PEKNMRVIKN ENSTTRP00000004810/1-1168 ---------- ----LDAVRS NLQKIRETES DDISAANTKN PGKNMRVTKN bmy_12337T0/1-656 ---------- ---------- ---------- ---------- ---------- BACU014329/1-871 ---------- ---------- ---------- ---------- ----MRVTKN 101 150 ENSP00000356774/1-1196 KLRNTQLATE NPNGDASVEE DKQGKPNKKV IKTVPQLTTQ DLKPETPENK ENSBTAP00000023877/1-1142 KPRDPQSATE DPENDVIVEE DKQEKANKKV MKTALQVTAQ EMEPEAPE-K ENSTTRP00000004810/1-1168 KPRDPQPATE DPDNDVTVED DTQEKANKKV IKTALQVTIQ EVDPETPEKK bmy_12337T0/1-656 ---------- ---------- ---------- ---------- ---------- BACU014329/1-871 KPRDSQPATE DPDNDVNVED DKQEKANKKV IKTALQVTAQ EVEPETPEKK 151 200 ENSP00000356774/1-1196 VDSTHQKTHT KPQPGVDHQK SEKANEGREE TDLEEDEELM QAYQCHVTEE ENSBTAP00000023877/1-1142 GDAAPQKRRT KPQPGVTHDK SEKAKEEGEK NTLDE-EQLM QVYQLQVAEE ENSTTRP00000004810/1-1168 ADATLQKAWT KPLPGVTREK SEKAEEG--E NSLDE-EELM QVYQLQVAEE bmy_12337T0/1-656 ---------- ---------- ---------- ---------- ---------- BACU014329/1-871 ADATPQKART KPLPGVTREK SEKAKEG--E NSLDE-EELM KVYQLQVAEE 201 250 ENSP00000356774/1-1196 MAKEIKRKIR KKLKEQLTY- -----FPSDT LFHDDKLSSE KRKKKKE-VP ENSBTAP00000023877/1-1142 MAKEIKKKIR KKLKEQLSY- -----FPLDS SLHDDKLSGE KRKKKKKKVP ENSTTRP00000004810/1-1168 MAKEIKKKIR KKLKEQLAY- -----FPSDT SLYDDKLNGE KRKKKKKNVP bmy_12337T0/1-656 ---------- ---------- ---------- ---------- ---------- BACU014329/1-871 MAKEIKKKIR KKLKEQLAYF PSETSFPSDT SLYDDKLNGE KRKKKKKKVP 251 300 ENSP00000356774/1-1196 VFSKAETSTL TISGDTVEGE QKKESSVRSV SSDSHQDDEI SSMEQSTEDS ENSBTAP00000023877/1-1142 TLSKSETSTS IISDDPVEGE QKKESPVGAV TSDTHQDDEV SSKEQNVEDN ENSTTRP00000004810/1-1168 ILSKSETSTL IISDDPVEGE QKKESPVGAV ISDSHQDDEI SSKEQNVEDN bmy_12337T0/1-656 ---------- ---------- ---------- ---------- ---------- BACU014329/1-871 ILSKSETSTL IISDDPVEGE QKKESPVGGV TSDSHQDDEI SSKEQNVEDN 301 350 ENSP00000356774/1-1196 MQDDTKPKPK KTKKKTKAVA DNNEDVDGDG VHEITSRDSP VYPKCLLDDD ENSBTAP00000023877/1-1142 MQDDSKSKLK KKKKKAKVVS DDNEDTDGDG VHEITSRDSP VYPKCLLDDD ENSTTRP00000004810/1-1168 VQDDAKSKPK K-KKKAKTVS DDNEDTDGDG VHEITSQDSP VYPKCLLDDD bmy_12337T0/1-656 ---------- ---------- ---------- ---------- ---------- BACU014329/1-871 VQDDAKSKPK K-KKKAKTVS DDNEDTDGDG VHEITSRDSP VYPKCLLDDD 351 400 ENSP00000356774/1-1196 LVLGVYIHRT DRLKSDFMIS HPMVKIHVVD EHTGQYVKKD DSGRPVSSYY ENSBTAP00000023877/1-1142 LVLGVYIHRT DRLKSDFMIS HPMVKIHVVD ENTGQYVKKD DSERPVSSYY ENSTTRP00000004810/1-1168 LVLGVYIHRT DRLKSDFMIS HPMVKIHVVD ENTGQYVKKD DSERPVSSYY bmy_12337T0/1-656 ---------- -------MIS HPMVKIHVVD ENTGQYVKKD DSERPVSSYY BACU014329/1-871 LVLGVYIHRT DRLKSDFMIS HPMVKIHVVD ENTGQYVKKD DSERPVSSYY 401 450 ENSP00000356774/1-1196 EKENVDYILP IMTQPYDFKQ LKSRLPEWEE QIVFNENFPY LLRGSDESPK ENSBTAP00000023877/1-1142 EKENVDYILP IMTQPYDFKQ LKSRLPEWEE QIIFNENFPY LLRDFEESPK ENSTTRP00000004810/1-1168 EKENVDYILP IMTQPYDFKQ LKSRLPEWEE QIIFNENFPY LLRDFDESPK bmy_12337T0/1-656 EKENVDYILP IMTQPYDFKQ LKSRLPEWEE QIIFNENFPY LLRDFDESPK BACU014329/1-871 EKENVDYILP IMTQPYDFKQ LKSRLPEWEE QIIFNENFPY LLRDFDESPK 451 500 ENSP00000356774/1-1196 VILFFEILDF LSVDEIKNNS EVQNQECGFR KIAWAFLKLL GANGNANINS ENSBTAP00000023877/1-1142 VILFFEILDF LSMEEIKNNS EIQNQECGFR KIAWAFLKLL GANGNVNINS ENSTTRP00000004810/1-1168 VILFFEILDF LSMEEIKNSS EIRNQECGFR KIAWAFLKLL G-NGNVNINS bmy_12337T0/1-656 VILFFEILDF LSMEEIKNNS EIRNQECGFR KIAWAFLKLL GANGNVNINS BACU014329/1-871 VILFFEILDF LSVEEIKNNS EIRNQECGFR KIAWAFLKLL GANGNVNINS 501 550 ENSP00000356774/1-1196 KLRLQLYYPP TKPRSPLSVV EAFEWWSKCP RNHYPSTLYV TVRGLKVPDC ENSBTAP00000023877/1-1142 KLRLQLYYPP TKPRSQSNVV EVFEWWSKCP RNHYPSTLYV TVRGLKVPEC ENSTTRP00000004810/1-1168 KLRLQLYYPP TKPRSQSNVV EVFEWWLKCP RNRYPSTLYV TVRGLKVPEC bmy_12337T0/1-656 KLRLQLYYPP TKPRSQSNVV EVFEWWSKCP RNRYPSTLYV TVRGLKVPEC BACU014329/1-871 KLRLQLYYPP TKPRSQSNVI EVFEWWSKCP RNRYPSTLYV TVRGLKVPEC 551 600 ENSP00000356774/1-1196 IKPSYRSMMA LQEEKGKPVH CERHHESSSV DTEPGLEESK EVIKWKRLPG ENSBTAP00000023877/1-1142 VKPSYRSMMA LQEEKGKPVY CERHHEPSLV DTEPGLEDSK EVVKWKRLPG ENSTTRP00000004810/1-1168 IKPSYRSMMA LQEEKGKPLY CEQHHEARSV DTEPGLEESK EVVKWKRLPG bmy_12337T0/1-656 IKPSYRSMTA LQEEKGKPLY CEQHHEARSV DTEPGLEDSK EVVKWKRLPG BACU014329/1-871 IKPSYRSMMA LQEEKGKPLY CEQHHEARSV DTEPGLEDSK EVVKWKRLPG 601 650 ENSP00000356774/1-1196 QACRIPNKHL FSLNAGERGC FCLDFSHNGR ILAAACASRD GYPIILYEIP ENSBTAP00000023877/1-1142 QACRIPNKHL FSLNAGERGC FCLAFSHNGR ILAAACASRD GYPIILYEIP ENSTTRP00000004810/1-1168 QACRIPNKHL FSLNAGERGC FCLAFSHNGR ILAAACASRD GYPIILYEIP bmy_12337T0/1-656 QACRIPNKHL FSLNAGERGC FGLAFSHNGR ILAAACASRD GYPVILYEVP BACU014329/1-871 QACRIPNKHL FSLNAGERGC LGLAFSHNGR ILAAACASRD GYPVILYEIP 651 700 ENSP00000356774/1-1196 SGRFMRELCG HLNIIYDLSW SKDDHYILTS SSDGTARIWK NEINNTNTFR ENSBTAP00000023877/1-1142 SGRFMRELCG HLNIIYDLCW SKDDRYILTA SSDGTARIWR NEINNTNTFR ENSTTRP00000004810/1-1168 SGRFMRELCG HLNIIYDLCW SKDDRYILTA SSDGTARIWK NEINNTNTFR bmy_12337T0/1-656 SGRFMRELCG HLNIIYDLCW SEDDRYILTA SSDGTARIWK NEINNTNTFR BACU014329/1-871 SGRFMRELCG HLNIIYDLCW SEDDRYILTA SSDGTARIWK NEINNTNTFR 701 750 ENSP00000356774/1-1196 VLPHPSFVYT AKFHPAVREL VVTGCYDSMI RIWKVEMRED SAILVRQFDV ENSBTAP00000023877/1-1142 VLPHPSFVYT AKFHPVVREL VVTGCYDSVI RIWEVDMRQD PAVLIRQFDT ENSTTRP00000004810/1-1168 VLPHPSFVYT AKFHPAVKEL VVTGCYDSVI RIWKVDMRED PAILIRQFDA bmy_12337T0/1-656 VLPHPSFVYT AKFHPAVKEL VVTGCYDSVI RIWKVDMRED PAILIRQFDT BACU014329/1-871 VLPHPSFVYT AKFHPAVKEL VVTGCYDSVI RIWKVDMRED PAILIRQFDN 751 800 ENSP00000356774/1-1196 HKSFINSLCF DTEGHHMYSG DCTGVIVVWN TYVKINDLEH SVHHWTINKE ENSBTAP00000023877/1-1142 HKSFINSLCF DIEGHHMYSG DCTGVIVVWN TYVKVNDAQH SVRHWSINKE ENSTTRP00000004810/1-1168 HKSFINSLCF DIEGHHMYSG DCTGVIVVWS TYVKVNDVQH SVRHWSVNKE bmy_12337T0/1-656 HKSFVNSLCF DIEGHHMYSG DCTGVIVVWN TYVKANDVQH SVRHWSVNKE BACU014329/1-871 HKSFVNSLCF DIEGNHMYSG DCTGVIVVWN TYVKANDVQH SVRHWSVNKE 801 850 ENSP00000356774/1-1196 IKETEFKGIP ISYLEIHPNG KRLLIHTKDS TLRIMDLRIL VARKFVGAAN ENSBTAP00000023877/1-1142 IKESEFKGIP ISYLEVHPNG KRLLIHTKDS TLRIMDLRIL AARKFVGAAN ENSTTRP00000004810/1-1168 IKESEFKGIP ISYLEVHPNG KRLLIHTKDS TLRIMDLRIL AARKFVGAAN bmy_12337T0/1-656 IKESEFKGIP ISYLEVHPNG KRLLIHTKDS TLRIMDLRIL AARKFVGAAN BACU014329/1-871 IKESEFKGIP ISYLEVHPNG KRLLIHTKDS TLRIMDLRIL AARKFVGAAN 851 900 ENSP00000356774/1-1196 YREKIHSTLT PCGTFLFAGS EDGIVYVWNP ETGEQVAMYS DLPFKSPIRD ENSBTAP00000023877/1-1142 YREKIHSTLT PCGTFLFAGS EDGIVYVWNP ETGEQVAMYS DLPFKSPVRD ENSTTRP00000004810/1-1168 YREKIHSTLT PCGTFLFAGS EDGIVYVWNP ETXXXXXXXX XXXXXXXIRD bmy_12337T0/1-656 YREKIHSTLT PCGTFLFAGS EDGIVYVWNP ETGEQVAMYS DLPFKSPIRD BACU014329/1-871 YREKIHSTLT PCGTFLFAGS EDGIVYVWNP ETGEQVAMYS DLPFKSPIRD 901 950 ENSP00000356774/1-1196 ISYHPFENMV AFCAFGQNEP ILLYIYDFHV AQQEAEMFKR YNGTFPLPGI ENSBTAP00000023877/1-1142 IAYHPLENMV AFCAFGQNEP ILLYIYDFHV AQQEAEMFRR YNGTFPLPGI ENSTTRP00000004810/1-1168 IAYH-LENMV AFCA-GQNEP -LLYIYDFHV AQQEAEMFKR YNGTFPLPGI bmy_12337T0/1-656 IAYHPLENMV AFCAFGQNEP ILLYIYDFH- ---------- ---------- BACU014329/1-871 IAYHPLENMV AFCAFGQNEP ILLYIYDFH- ---------- ---------- 951 1000 ENSP00000356774/1-1196 HQSQDALCTC PKLPHQGSFQ IDEFVHTESS STKMQLVKQR LETVTEVIRS ENSBTAP00000023877/1-1142 HQSQGALCTC PKLPHQGSFQ IDDYVPTEHS SMKMQQVKQR IDSVTEVIRA ENSTTRP00000004810/1-1168 HQNQDALCIC PRLPHQGSFQ IDDYVHTENS SMKMQQVKQR IDSVTEVIRA bmy_12337T0/1-656 ---------- -------EFY KEEIINFSDT YSDLQNSITD GGILFEVL-- BACU014329/1-871 ---------- -------EF- -DKFI----- ---------- -GILVKTF-- 1001 1050 ENSP00000356774/1-1196 CAAKVNKNLS FTSPPAVSSQ QSKLKQSNML TAQEILHQFG FTQTGIISIE ENSBTAP00000023877/1-1142 CAAKVNKNLS FTSTSA-SSQ QSKSKQSNML DAHQILRQFG FSQTGIMSIE ENSTTRP00000004810/1-1168 CAAKVNKNLS FTSVSAXXXX XXXXXXXXXX XXXXXXXXXX XXXXXIISIE bmy_12337T0/1-656 ---------- ---------- ---------- ---------- ---------- BACU014329/1-871 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000356774/1-1196 RKPCNHQVDT APTVVALYDY TANRSDELTI HRGDIIRVFF KDNEDWWYGS ENSBTAP00000023877/1-1142 RKPCNHHVDT APTVVALYDY TANRSDELTI HRGDIIRVFF KDNEDWWYGS ENSTTRP00000004810/1-1168 RKPCNHHVDT APTVVALYDY TANRSDELTI HRGDIIRVFF KDNEDWWYGS bmy_12337T0/1-656 ---------- ---LVTLYKF ---------- ---------- ---------- BACU014329/1-871 ---------- ---ISVVLGY ---------- ---------- ---------- 1101 1150 ENSP00000356774/1-1196 IGKGQEGYFP ANHVASETLY QELPPEIKER SPPLSPEEKT KIEKS-PAPQ ENSBTAP00000023877/1-1142 IGKGQEGYFP ANHVASETLY RELPPEVKER SPPITPKEKA KMEKAFPAPQ ENSTTRP00000004810/1-1168 RGKGQEGYFP ANHVASETLY REQPPEVKER SPPLTPKEKA KMEKAFSAPQ bmy_12337T0/1-656 -------YMT YK-------- ---------- ----IFQEIQ DYEQALKYTQ BACU014329/1-871 -------YFN IN-------- ---------- ----I---KM NKNGKFAYVK 1151 1200 ENSP00000356774/1-1196 KQSINKNKSQ DFRLGSESMT HSEMRKEQSH EDQGHIMDTR MRKNKQAGRK ENSBTAP00000023877/1-1142 K--------- ---------- ---------- ---------- ---------- ENSTTRP00000004810/1-1168 KQSF---KSQ DFRPGSESMT HSEVGREQSL EDHRHIMDVQ GKKNEQTGRK bmy_12337T0/1-656 ATRI---EAR TYT------- ---------- EALNLLYKSR RSVSYENILR BACU014329/1-871 AS-------- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000356774/1-1196 VTLIE ENSBTAP00000023877/1-1142 ----- ENSTTRP00000004810/1-1168 VTLIE bmy_12337T0/1-656 IFLIV BACU014329/1-871 -----