KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:21:50 2014 Check: 00 .. Name: ENSP00000300900/1-312 Len: 313 Check: 2738 Weight: 1.00 Name: ENSBTAP00000023909/1-312 Len: 313 Check: 5911 Weight: 1.00 Name: ENSTTRP00000008324/1-290 Len: 313 Check: 2798 Weight: 1.00 Name: bmy_19402T0/1-268 Len: 313 Check: 8499 Weight: 1.00 Name: BACU005287/1-222 Len: 313 Check: 1383 Weight: 1.00 // 1 50 ENSP00000300900/1-312 MRMLLALLAL SAARPSASAE SHWCYEVQAE SSNYPCLVPV KWGGNCQKDR ENSBTAP00000023909/1-312 MRLLLALLVL AAAPPQARAA SHWCYQIQVK PSNYTCLEPD EWEGSCQNNR ENSTTRP00000008324/1-290 ---------- ---------- SHWCYQNQVK PSNYTCLGPD QWGDSCQNDR bmy_19402T0/1-268 MRLLPALLVL AAARPWAHAG SHWCYQNQVK PSNYTCLGPD QWGDSCQNDR BACU005287/1-222 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000300900/1-312 QSPINIVTTK AKVDKKLGRF FFSGYDKKQT WTVQNNGHSV MMLLENKASI ENSBTAP00000023909/1-312 QSPVNIVTAK TQLDPNLGRF SFSGYNMKHQ WVVQNNGHTV MVLLENKPSI ENSTTRP00000008324/1-290 QSPINIATAK TLLDPNLGPF SFSGYDKKQK WXXXXXXXXX MVLLGAEASI bmy_19402T0/1-268 QSPINIVTAK TLLDPNLGPF SFSGYDKKQK WA-------- -------ASI BACU005287/1-222 ---------- ---------- ---------- ---------- MVLLGDEASI 101 150 ENSP00000300900/1-312 SGGGLPAPYQ AKQLHLHWSD LPYKGSEHSL DGEHFAMEMH IVHEKEKGTS ENSBTAP00000023909/1-312 AGGGLSTRYQ ATQLHLHWSR AMDRGSEHSF DGERFAMEMH IVHEKEKGLS ENSTTRP00000008324/1-290 AGGGLAARYR AKQLHLHWSK VLDWGSEHSF DGDRFAMEMH VVHEKEKGTS bmy_19402T0/1-268 AGGGLAARYR AKQLHLHWSK LLDWGSEHSF DGDRFAMEIH MVHEKEKGTS BACU005287/1-222 AGGGLTARYR AKQLHLHWSK VMDWGSEHSF DGDRFAMEIH MVHEKEKGTS 151 200 ENSP00000300900/1-312 RNVKEAQDPE DEIAVLAFLV EAGTQVNEGF QPLVEALSNI PKPEMSTTMA ENSBTAP00000023909/1-312 GNASQNQFAE DEIAVLAFMV EDGSK-NVNF QPLVEALSDI PRPNMNTTMK ENSTTRP00000008324/1-290 RNTNQNQDPK DEIAVLAFMV EAGSE-NVNF QPLVQALSDI PNPNMNTMLK bmy_19402T0/1-268 RNTNKNQDPK DEIAVLAFMV EAGSK-NVNF QPLVQALSDI PSPNMNTTLK BACU005287/1-222 RNTNKNQDPK DEIAVLAFMV KAGSE-NVNF QPLVQALSDI PSPDMNTTLK 201 250 ENSP00000300900/1-312 E-SSLLDLLP KEEKLRHYFR YLGSLTTPTC DEKVVWTVFR EPIQLHREQI ENSBTAP00000023909/1-312 EGVSLFDLLP EEESLRHYFR YLGSLTTPTC DEKVVWTVFQ KPIQLHRDQI ENSTTRP00000008324/1-290 DNISLFDLLP KME-LRHYFR YLGSLTTPGC DEKV-WTVFQ EPIQLHKDQI bmy_19402T0/1-268 D-ISLFDLLP KKEKLRHYFR YLGSLTTPGC DEKV------ ---------- BACU005287/1-222 EDISLFDLLP KKEKLRHYFR YLGSLTTPGC DEKVVWTVFQ EPIQLHEDQI 251 300 ENSP00000300900/1-312 LAFSQKLYYD KEQTVSMKDN VRPLQQLGQR TVIKSGAPGR PLPWALPALL ENSBTAP00000023909/1-312 LAFSQKLFYD DQQKVNMTDN VRPVQSLGQR QVFRSGAPGL LLAQPLPTLL ENSTTRP00000008324/1-290 LAFSQKLYYD NEKKLKMTDN VRPLQPRGQR QVLRSQAPGR LLPLPLPALL bmy_19402T0/1-268 ---------- --KKLKMTDN VRPLQPRGQR QVFRSQAPGR LLPLPLPTLL BACU005287/1-222 LAFSQKLYYD NEKKLQMTDN VRPLQPRGER QVFRSQAPGR LLPLPLPTLL 301 350 ENSP00000300900/1-312 GPMLACLLAG FLR ENSBTAP00000023909/1-312 APVLACLTVG FLR ENSTTRP00000008324/1-290 APVLTCLTAG FLR bmy_19402T0/1-268 TLALTCLTAG FLR BACU005287/1-222 TLALACLTAG FLR