KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:21:51 2014 Check: 00 .. Name: bmy_22099T0/1-390 Len: 536 Check: 1535 Weight: 1.00 Name: ENSP00000361413/1-461 Len: 536 Check: 6244 Weight: 1.00 Name: ENSBTAP00000023924/1-460 Len: 536 Check: 3747 Weight: 1.00 Name: BACU016208/1-461 Len: 536 Check: 5152 Weight: 1.00 Name: ENSTTRP00000014390/1-440 Len: 536 Check: 9141 Weight: 1.00 // 1 50 bmy_22099T0/1-390 MVNDRWKTVG GASQLEDRPR DKPQRPSCTY ALCTVLLSLA VLLAVAVTGA ENSP00000361413/1-461 MVNDRWKTMG GAAQLEDRPR DKPQRPSCGY VLCTVLLALA VLLAVAVTGA ENSBTAP00000023924/1-460 MVNDRWKTMG GASQLEDRPR DKPQRPSCSY VLCTVLLSLA VLLAVAVTGA BACU016208/1-461 MVNDRWKTVG GASQLEDRPR DKPQRPSCTY ALCTVLLSLA VLLAVAVTGA ENSTTRP00000014390/1-440 ---------- ---------- -KPQRPSCTY ALCTVLLSLA VLLAVAVTGA 51 100 bmy_22099T0/1-390 VLFLNHAHAP GTAPPPIVST GPAGANSALV TVDRADGSRL NILIDPRCPD ENSP00000361413/1-461 VLFLNHAHAP GTAPPPVVST GAASANSALV TVERADSSHL SILIDPRCPD ENSBTAP00000023924/1-460 VLLLNHARVP GTAPPPVVST GPAGANSALV TVDRADSSRL SILIDPRCPD BACU016208/1-461 VLFLNHAHAP GTAPPPVVST GPAGANSALV TVDRADGSRL NILIDPRCPD ENSTTRP00000014390/1-440 VLFLNHAHVP GTAPPPLVST GPAGANSALV TVDRADASRL NILIDPRCPD 101 150 bmy_22099T0/1-390 LADGFARLEG AQASVLQALS QRQPEPRLAG EQERELLDTL ADQLPRLLAR ENSP00000361413/1-461 LTDSFARLES AQASVLQALT EHQAQPRLVG DQEQELLDTL ADQLPRLLAR ENSBTAP00000023924/1-460 LADGFARLEG AQASVLQALS QRQAELRLPG EQEQELLDTL ADQLPRLLAR BACU016208/1-461 LADGFARLEG AQASVLQALS QRQPEPRLAG EQERELLDTL ADQLPRLLAR ENSTTRP00000014390/1-440 LADGFARLEG AQASVLQALS QRQPEPWLAG QQERELLDTL ADQLPRLLAR 151 200 bmy_22099T0/1-390 ASELQAECVG LRKGHSTLGQ GLSALQREQG RFIQSSTKPC APPFRSPTHL ENSP00000361413/1-461 ASELQTECMG LRKGHGTLGQ GLSALQSEQG RLI------- ---------- ENSBTAP00000023924/1-460 ASELQAECSG LRKGHGALGQ GLSALQSEQG RLI------- ---------- BACU016208/1-461 ASELQAECVG LRKGHSTLGQ GLSALQSEQG RFI------- ---------- ENSTTRP00000014390/1-440 ASELQAECVG LRKGHSVLGQ GLSALQSEQG RFI------- ---------- 201 250 bmy_22099T0/1-390 ELHPPLCSTH PELHQTLCST LPEPHPPGAP PTPALHPLPC STLPELHRTL ENSP00000361413/1-461 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023924/1-460 ---------- ---------- ---------- ---------- ---------- BACU016208/1-461 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014390/1-440 ---------- ---------- ---------- ---------- ---------- 251 300 bmy_22099T0/1-390 RSTEPCAPQL LSESQGHMAH LVNSVSDVLD ALQRDRGLGR PHVKADLQRA ENSP00000361413/1-461 --------QL LSESQGHMAH LVNSVSDILD ALQRDRGLGR PRNKADLQRA ENSBTAP00000023924/1-460 --------QL LSESQGHMAH LVNSVSDVLD ALQRDRGLAR PHVKADLQRA BACU016208/1-461 --------QL LSESQGHMAH LVNSVSDVLD ALQRNRGLGR PHVKADLQRA ENSTTRP00000014390/1-440 --------QL LSESQGHMAH LVNSVSDVLD ALQRDRGLGR LHVKADLQRA 301 350 bmy_22099T0/1-390 PARGSRPRGC ANGSRPRDCL DVLLSGQQED GVYSVFPTHD PAGFQVYCDM ENSP00000361413/1-461 PARGTRPRGC ATGSRPRDCL DVLLSGQQDD GVYSVFPTHY PAGFQVYCDM ENSBTAP00000023924/1-460 PARGSRPRGC ANGSRPRDCL DVLLSGQQED GVYSVFPTHD PAGFQVYCDM BACU016208/1-461 PARGSRPRGC ANGSRPRDCL DVLLSGQQED GVYSVFPTHD PAGFQVYCDM ENSTTRP00000014390/1-440 PARGSRPRGC ANGSRPRDCL DVLLSGQQED GVYSVFPTHD PAGFQVYCDM 351 400 bmy_22099T0/1-390 RTDGGGWTAV ---------- ---------- ---VAG---- ---------- ENSP00000361413/1-461 RTDGGGWTVF QRREDGSVNF FRGWDAYRDG FGRLTGEHWL GLKRIHALTT ENSBTAP00000023924/1-460 RTDGGGWTVF QRREDGSVNF FRGWEAYRDG FGKLTGEHWL GLKRIHALTT BACU016208/1-461 RTDGGGWTVF QRREDGSVNF FRGWEAYRDG FGKLTGEHWL GLKRIHALTT ENSTTRP00000014390/1-440 RTDGGGWTVF QRREDGSVNF FRGWEAYRDG FGKLTGEHWL GLKRIHALTT 401 450 bmy_22099T0/1-390 ---------- ---------- -----GPAVT SV-------P QAA------- ENSP00000361413/1-461 QAAYELHVDL EDFENGTAYA RYGSFGVGLF SVDPEEDGYP LTVADYSGTA ENSBTAP00000023924/1-460 QAAYELHVDL EDFDNGTAYA HYGSFGVGLF SVDPEEDGYP LTVADYSGTA BACU016208/1-461 QAAYELHVDL EDFDNGTAYA HYGSFGVGLF SVDPEEDGYP LTVADYSGTA ENSTTRP00000014390/1-440 QAAYELHVDL EDFDNGTAYA HYGSFGVGLL SVDPEEDGYP LTVAGYSGTA 451 500 bmy_22099T0/1-390 ---------- ---------- ---------- --------CR APNCSGES-- ENSP00000361413/1-461 GDSLLKHSGM RFTTKDRDSD HSENNCAAFY RGAWWYRNCH TSNLNGQYLR ENSBTAP00000023924/1-460 GDSLLKHSGM KFTTKDRDSD HSENNCAAFY RGAWWYRNCH TSNLNGQYLR BACU016208/1-461 GDSLLKHSGM RFTTKDRDSD HSENNCAAFY RGAWWYRNCH TSNLNGQYLR ENSTTRP00000014390/1-440 GDSLLKHSGM RFTTKDRDSD HSENNCAAFY RGAWWYRNCH TSNLNGQYLR 501 550 bmy_22099T0/1-390 ---------- ---------- ----SE---- PCTR-- ENSP00000361413/1-461 GAHASYADGV EWSSWTGWQY SLKFSEMKIR PVREDR ENSBTAP00000023924/1-460 GAHASYADGV EWSSWTGWQY SLK-SEMKIR PVVRPL BACU016208/1-461 GAHASYADGV EWSSWTGWQY SLKFSEMKVR PVREDR ENSTTRP00000014390/1-440 GAHASYADGV EWSSWTGWQY SLKFSEMKIR PVREDR