KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:21:51 2014 Check: 00 .. Name: bmy_15156T0/1-361 Len: 818 Check: 7364 Weight: 1.00 Name: ENSP00000309653/1-620 Len: 818 Check: 2466 Weight: 1.00 Name: ENSBTAP00000023928/1-709 Len: 818 Check: 5380 Weight: 1.00 Name: BACU000251/1-818 Len: 818 Check: 4172 Weight: 1.00 Name: ENSTTRP00000011166/1-620 Len: 818 Check: 9392 Weight: 1.00 // 1 50 bmy_15156T0/1-361 ---------- ---------- ---------- ---------- ---------- ENSP00000309653/1-620 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023928/1-709 ---------- ---------- ---------- ---------- ---------- BACU000251/1-818 MHCEVAEAHS DKRPKEAPGA PGPGRGPAGL GLHMAFRVTG SRGGCGDGGP ENSTTRP00000011166/1-620 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_15156T0/1-361 ---------- ---------- ---------- ---------- ---------- ENSP00000309653/1-620 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023928/1-709 ---------- ---------- ---------- ---------- ---------- BACU000251/1-818 RDLLPAPPRA HDLLEPRSPR DYGPSKASAA GKDKGGSERL GYLAKNTSVG ENSTTRP00000011166/1-620 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_15156T0/1-361 ---------- ---------- ---------- ---------- ---------- ENSP00000309653/1-620 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023928/1-709 ---------V NGSYGHCTPG SEKSLLDLDL AEGPGPTCRQ GLFLPAGSPP BACU000251/1-818 ERQSSDSRPV NGSYGHCTPG SEKSLLDLDL AEGPGLPCRQ GLFLPAGSPP ENSTTRP00000011166/1-620 ---------- ---------- ---------- ---------- ---------- 151 200 bmy_15156T0/1-361 ---------- ---------- ---------- ---------- ---------- ENSP00000309653/1-620 ---------- ---------- ---------- ---------- --------MA ENSBTAP00000023928/1-709 PRGHPLACER LLHFPHPSRS PRPQATYVNG GLPATQHIKQ ESLPDYRAMT BACU000251/1-818 PRGHPSACER LLHFPHPSRS PRPQATYVNG GLPATQHIKQ ESLPDYRAMT ENSTTRP00000011166/1-620 ---------- ---------- ---------- ---------- --------MT 201 250 bmy_15156T0/1-361 ---------- ---------- ----MGVGAT VLRRTAGQIG AQTGCGE--- ENSP00000309653/1-620 EARTSLSAHC RGPLATGLHP DLDLPGRSLA TPAPSCYLLG SEPSSGLGLQ ENSBTAP00000023928/1-709 EARAPPSAHC RAPPATGLHT DLDLPGRGLA NPAPSCYLLG SEPSSGLGPP BACU000251/1-818 EARAPLSAHC RAPPATGLHT DLDLSGRGLA NPAPSCYLLG SEPSSGLGPP ENSTTRP00000011166/1-620 EARAPLSAHC RAPPATGLHT DLDLSGRGLA NPAPSCYLLG SEPSSSLGPP 251 300 bmy_15156T0/1-361 ---------- ---MIYGSP- ---------- ---------- ---------- ENSP00000309653/1-620 PETHLPEGSL KRCCVLGLPP TSPASSSPCA SSDVTSIIRS SQTSLVTCVN ENSBTAP00000023928/1-709 PEAHLPEGGL KRCCLLGLPP TSSVSVSPCA ASDITSIIRS SQTALVTCVN BACU000251/1-818 PEAHPPEGGL KRCCLLGLPP ASSASASPCA SSDITSIIRS SQTALVTCVN ENSTTRP00000011166/1-620 PEAHLPEGGL KRCCLLGLPP ASSASASPCA SSDITSIIRS SQTALVTCVN 301 350 bmy_15156T0/1-361 ---------E SGGPSK-VRS GTRHSTPHQP FLQ------- ---------- ENSP00000309653/1-620 GLRSPPLTGD LGGPSKRARP GPASTDSHEG SLQLEACRKA SFLKQEPADE ENSBTAP00000023928/1-709 GLRSPPMPGD TGGPPKRARP SSASTESHEG TLRLEACRKA GFLKQEPADE BACU000251/1-818 GLRSPPLPGD PGGPPKRARP SPASTESHEG SLQLEACRKS GFLKQEPADE ENSTTRP00000011166/1-620 GLRSPPLPGD PGGPPKRARP SPASTESHEG SLQLEACRKA GFLKQEPADE 351 400 bmy_15156T0/1-361 ---------- ---------- ---------- ---------- ---------- ENSP00000309653/1-620 FSELFGPHQQ GLPPPYPLSQ LPPGPSLGGL GLGLAGRVVA GRQACRWVDC ENSBTAP00000023928/1-709 FSELFGPHQQ GLPPPYPLSQ LPPGPGLGGL GLGLAGRGLA GRQACRWVDC BACU000251/1-818 FSELFGPHQQ GLPPPYPLSQ LPPGPGLGGL GLGLAGRGLA GRQACRWVDC ENSTTRP00000011166/1-620 FSELFGPHQQ GLPPPYPLSQ LPPGPGLGGL ELGLAGRGVA GRQACRWVDC 401 450 bmy_15156T0/1-361 ---------- ---------- ---------- ---------- ---------- ENSP00000309653/1-620 CAAYEQQEEL VRHIEKSHID QRKGEDFTCF WAGCVRRYKP FNARYKLLIH ENSBTAP00000023928/1-709 CAAYEQQEEL VRHIEKSHID QRKGEDFTCF WAGCVRRYKP FNARYKLLIH BACU000251/1-818 CAAYEQQEEL VRHIEKSHID QRKGEDFTCF WAGCVRRYKP FNARYKLLIH ENSTTRP00000011166/1-620 CAAYEQQEEL VRHIEKSHID QRKGEDFTCF WAGCVRRYKP FNARYKLLIH 451 500 bmy_15156T0/1-361 ---------- ---FEGCSKA FSRLENLKIH LRSHTGEKPY LCQHPGCQKA ENSP00000309653/1-620 MRVHSGEKPN KCMFEGCSKA FSRLENLKIH LRSHTGEKPY LCQHPGCQKA ENSBTAP00000023928/1-709 MRVHSGEKPN KCMFEGCSKA FSRLENLKIH LRSHTGEKPY LCQHPGCQKA BACU000251/1-818 MRVHSGEKPN KCMFEGCSKA FSRLENLKIH LRSHTGEKPY LCQHPGCQKA ENSTTRP00000011166/1-620 MRVHSGEKPN KCMFEGCSKA FSRLENLKIH LRSHTGEKPY LCQHPGCQKA 501 550 bmy_15156T0/1-361 FSNSSDRAKH QRTHLDTKPY ACQIPGCSKR YTDPSSLRKH VKAHSAKEQQ ENSP00000309653/1-620 FSNSSDRAKH QRTHLDTKPY ACQIPGCSKR YTDPSSLRKH VKAHSAKEQQ ENSBTAP00000023928/1-709 FSNSSDRAKH QRTHLDTKPY ACQIPGCSKR YTDPSSLRKH VKAHSAKEQQ BACU000251/1-818 FSNSSDRAKH QRTHLDTKPY ACQIPGCSKR YTDPSSLRKH VKAHSAKEQQ ENSTTRP00000011166/1-620 FSNSSDRAKH QRTHLDTKPY ACQIPGCSKR YTDPSSLRKH VKAHSAKEQQ 551 600 bmy_15156T0/1-361 VRKKLHMCPD AEADVLTECL ALQQLHASTQ LAASNGKGGR TLSQELLPGV ENSP00000309653/1-620 VRKKLHAGPD TEADVLTECL VLQQLHTSTQ LAASDGKGGC GLGQELLPGV ENSBTAP00000023928/1-709 VRKKLHTGPD AEADILTECL ALQQLHTSTQ LAASDGKGGR ALGQELLPGM BACU000251/1-818 VRKKLHMCPD AEANVLTECL ALQQLHASTQ LAASNGKGGR TLSQELLPGV ENSTTRP00000011166/1-620 VRKKLHMCPD AEADVLTECL ALQQLHASTQ LAASNGKGGR TLSQELLPGV 601 650 bmy_15156T0/1-361 YPGSITPHNG LASSILPPMH DVPSRHHSLD ATTGSHHHLS PLPTAESTRD ENSP00000309653/1-620 YPGSITPHNG LASGLLPPAH DVPSRHHPLD ATTSSHHHLS PLPMAESTRD ENSBTAP00000023928/1-709 YPGSINPHNG LAASILPSMH DVPSRHHPLD ATTSSHHHLS PLPTAESTRD BACU000251/1-818 YPGSITPHNG LASSILPPMH DVPSRHHPLD ATTSSHHHLS PLPTAESTRD ENSTTRP00000011166/1-620 YPGSITPHNG LASSILPPMH DVPSRHHPLD ATTSSHHHLS PLPTAESTRD 651 700 bmy_15156T0/1-361 GLGPGLLSPM VSPLKGLAPP PLPPSSQSHS PGGQSFPTLP SKPPYPPFQS ENSP00000309653/1-620 GLGPGLLSPI VSPLKGLGPP PLPPSSQSHS PGGQPFPTLP SKPSYPPFQS ENSBTAP00000023928/1-709 GLGPGLLSPM VSPLKGLGPP PLPPSSQSHS PGGQPFPTLP SKPPYPPFQS BACU000251/1-818 GLGPGLLSPM VSPLKGLAPP PLPPSSQSHS PGGQSFPTLP SKPPYPPFQS ENSTTRP00000011166/1-620 GLGPGLLSPM VSPLKGLAPP PLPPSSQSHS PGGQSFPTLP SKPPYPPFQS 701 750 bmy_15156T0/1-361 PPPQPLPSPQ G--------- ---------- ---------T VVGHSH-VRP ENSP00000309653/1-620 PPPPPLPSPQ GYQGSFHSIQ SCFPYGDCYR MAEPAAGGDG LVGETHGFNP ENSBTAP00000023928/1-709 PPPQPLPSPQ GYQGSFHSIQ NCFPYGDCYR SAEQAASGDG LAGEAHGFNP BACU000251/1-818 PPPQPLPSPQ GYQGSFHSIQ NCFPYGDCYR SAEQAASGDG LAGEAHGFNP ENSTTRP00000011166/1-620 PPPQPLPSPQ GYQGSFHSIQ NCFPYGDCYR SAEQATSGDG LAGEAHGFNP 751 800 bmy_15156T0/1-361 PRPTPC-GAG PPAPPPAWDS L-----HSFT PPMPTGQ--- -----CGGLS ENSP00000309653/1-620 LRPNGYHSLS TPLPATGYEA LAEASCPTAL PQQPSEDVVS SGPEDCGFFP ENSBTAP00000023928/1-709 LRPNGYHGLS APLPAPGYEA LAEAPCPTTM PPQSSEDVVS SGPEDCGFFP BACU000251/1-818 LRPNGYHGLS APLPATGYEA LAEAPCPTVL PPQPSEDVMS SGPEDCGFFP ENSTTRP00000011166/1-620 LRPNGYHGLS APLPATGYEA LAEAPCPTVL PPQPSEDVVS SGPEDCGFFP 801 850 bmy_15156T0/1-361 TAVGDRPL-- -PPWAFSL ENSP00000309653/1-620 NGAFDHCLGH IPSIYTDT ENSBTAP00000023928/1-709 NGAFDHCLSH IPSIYTDT BACU000251/1-818 NGAFDHCLSH IPSIYTDT ENSTTRP00000011166/1-620 NGAFDHCLSH IPSIYTDT