KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:21:53 2014 Check: 00 .. Name: ENSP00000335560/1-619 Len: 670 Check: 2976 Weight: 1.00 Name: ENSBTAP00000023960/1-619 Len: 670 Check: 3571 Weight: 1.00 Name: bmy_03875T0/1-630 Len: 670 Check: 4327 Weight: 1.00 Name: BACU008160/1-618 Len: 670 Check: 8680 Weight: 1.00 Name: ENSTTRP00000015918/1-618 Len: 670 Check: 8731 Weight: 1.00 // 1 50 ENSP00000335560/1-619 MKPPDRPAPG RTDRILGVMG GMLRACALPG QEGPPRRSPL GLVGTEPESE ENSBTAP00000023960/1-619 MKPPDRPGPG RTDRILGVMG GMLRACALPG QEGPSKRSPL GPGSTEPGSN bmy_03875T0/1-630 MRGGQKGGRC ACPRVI---- ---------- ------RKVL AKCGC----- BACU008160/1-618 MKPPDRPAPG RTDRILGVMG GMLRACALPG QEGHPKRSPL GPGGTEPESN ENSTTRP00000015918/1-618 MKPPERPAPG RTDRILGVMG GMLRACALPG QEGPPKRSPL GLGGTEPESN 51 100 ENSP00000335560/1-619 RTEGDHRRDR EHEVLAGALQ PESYSIAGSE GSISASAASG LAAPSGPSSG ENSBTAP00000023960/1-619 CTEGDQRGES DREVPAWVPL LESYSIAGSE GSISASAASG LAAPSGPSSG bmy_03875T0/1-630 CFA---RGGR ---------- -ESYSIAGSE GSISASAASG LAAPSGPSSG BACU008160/1-618 CMEGNQRGER EREVPAWAPL PESYSIAGSE GSISASAASG LAAPSGPSSG ENSTTRP00000015918/1-618 CTEGNQRGER EREVPAWAPL PESYSIAGSE GSISASAASG LAAPSGPSSG 101 150 ENSP00000335560/1-619 LSSGPCSPGP PGPVSGLRRW LDHSKHCLSV ETEADSGQAG PYENWMLEPA ENSBTAP00000023960/1-619 LSSGPCSPGP PRPVSGLRRW LDHSKHCLSV ETEADSGRAG PYENWMLEPA bmy_03875T0/1-630 LSSGPCSPGP PGPVSGLRRW LDHSKHCLSV ETEAEGGQAG PYENWMLEPA BACU008160/1-618 LNSGPCSPGP PGPVSGLRRW LDHSKHCLSV ETEAEGGQAG PYENWMLEPA ENSTTRP00000015918/1-618 LSSGPCSPGP PGPVSGLRRW LDHSKHCLSV ETEAEGGQAG PYENWMLEPA 151 200 ENSP00000335560/1-619 LATGEELPEL TLLTTLLEGP GDKTQPPEEE TLSQAPESEE EQKKKALERS ENSBTAP00000023960/1-619 LATGEELPEL NLLTTLLGGP GDKTQPPEEE TLSQAPESEE EQKKKALERS bmy_03875T0/1-630 LATGEELPEL TLLTTLLGGP GDKMQPPEEE TLSQAPESEE DQ-KKALERS BACU008160/1-618 LATGEELPEL TLLTTLLGGP GDKTQPPEEE TLSQAPESEE DQ-KKALERS ENSTTRP00000015918/1-618 LATGEELPEL TLLTTLLGGP GDKTQPPEEE TLSQAPESEE DQ-KKALERS 201 250 ENSP00000335560/1-619 MYVLSELVET EKMYVDDLGQ IVEGYMATMA AQGVPESLRG RDRIVFGNIQ ENSBTAP00000023960/1-619 MYVLSELVET EKMYVDDLGQ IVEGYMATMA AQGVPENLRG RDRIVFGNIQ bmy_03875T0/1-630 MYVLSELVET EKMYVDDLGQ IVEGYMATMA AQGVPENLRG RDRIVFGNIQ BACU008160/1-618 MYVLSELVET EKMYVDDLGQ IVEGYMATMA AQGVPENLRG RDRIVFGNIQ ENSTTRP00000015918/1-618 MYVLTELVET EKMYVEDLGQ IVEGYMATMA AQGVPENLRG RDRIVFGNIQ 251 300 ENSP00000335560/1-619 QIYEWHRDYF LQELQRCLKD PDWLAQLFIK HERRLHMYVV YCQNKPKSEH ENSBTAP00000023960/1-619 QIYEWHRDYF LRELQRCLKD PDWLAQLFIK HERRLHMYVV YCQNKPKSEH bmy_03875T0/1-630 QIYEWHRDYF LQELQRCLKD PDWLAQLFIK HERRLHMYVV YCQNKPKSEH BACU008160/1-618 QIYEWHRDYF LQELQLCLKD PDWLAQLFIK HERRLHMYVV YCQNKPKSEH ENSTTRP00000015918/1-618 QIYEWHRDYF LQELQRCLKD PDWLAQLFIK HERRLHMYVV YCQNKPKSEH 301 350 ENSP00000335560/1-619 VVSEFGDSYF EELRQQLGHR LQLNDLLIKP VQRIMKYQLL LKDFLKYYNR ENSBTAP00000023960/1-619 VVSEFGDSYF EELRQQLGHR LQLNDLLIKP VQRIMKYQLL LKDFLKYYRR bmy_03875T0/1-630 VVSEFGDSYF EELRQQLGHR LQLNDLLIKP VQRIMKYQLL LKDFLKYYSR BACU008160/1-618 VVSEFGDSYF EELRQQLGHR LQLNDLLIKP VQRIMKYQLL LKDFLKYYSR ENSTTRP00000015918/1-618 VVSEFGDSYF EELRQQLGHR LQLNDLLIKP VQRIMKYQLL LKDFLKYYSR 351 400 ENSP00000335560/1-619 AGMDTADLEQ AVEVMCFVPK RCNDMMTLGR LRGFEGKLTA QGKLLGQDTF ENSBTAP00000023960/1-619 AGMDTEELEQ AVEVMCFVPK RCNDMMTLGR LRGFEGKLTA QGKLLGQDTF bmy_03875T0/1-630 AGMDTEELEQ AVEVMCFVPK RCNDMMTLGR LRGFEGKLTA QGKLLGQDTF BACU008160/1-618 AGMDTEELEQ AVEVMCFVPK RCNDMMTLGR LRGFEGKLTA QGKLLGQDTF ENSTTRP00000015918/1-618 AGMETEELEQ AVEVMCFVPK RCNDMMTLGR LRGFEGKLTA QGKLLGQDTF 401 450 ENSP00000335560/1-619 WVTEPEAGGL LSSRGRERRV FLFEQIIIFS EALGGGVRGG TQPGYVYKNS ENSBTAP00000023960/1-619 WVTEPEAGGL LSSRGRERRV FLFEQIIIFS EALGGGVRGG AQPGYVYKNS bmy_03875T0/1-630 WVTEPEAGGL LSSRGRERRV FLFEQIIIFS EALGGGVRGG TQPGYVYKSS BACU008160/1-618 WVTEPEAGGL LSSRGRERRV FLFEQIIIFS EALGGGVRGG TQPGYVYKSS ENSTTRP00000015918/1-618 WVTEPEAGGL LSSRGRERRV FLFEQIIIFS EALGGGVRGG TQPGYVYKSS 451 500 ENSP00000335560/1-619 IK-------- ---------- ---------- ---------- ---------- ENSBTAP00000023960/1-619 IK-------- ---------- ---------- ---------- ---------- bmy_03875T0/1-630 IKVGRVSQGR GLTGIGEASE RMEASQILLD LLEGTGTREG LKNLGATSYL BACU008160/1-618 IK-------- ---------- ---------- ---------- ---------- ENSTTRP00000015918/1-618 IK-------- ---------- ---------- ---------- ---------- 501 550 ENSP00000335560/1-619 ---VSCLGLE GNLQGDPCRF ALTSRGPEGG IQRYVLQAAD PAISQAWIKH ENSBTAP00000023960/1-619 ---VSCLGLE ANLQGDPCRF ALTSRGPEGG IQRYVLQAAD PAISQAWIKQ bmy_03875T0/1-630 PIQVSCLGLE GNLQGDPCRF ALTSRGPEGG IQRYVLQTAD PAVSQAWIKQ BACU008160/1-618 ---VSCLGLE GNLQGDPCRF ALTSRGPEGV IQRYVLQTAD PAVSQAWIKQ ENSTTRP00000015918/1-618 ---VSCLGLE GNLQGDPCRF ALTSRGPEGG IQRYVLQTAD PAVSQAWIKQ 551 600 ENSP00000335560/1-619 VAQILESQRD FLNALQSPIE YQRRESQTNS LGRPRGPGVG SPGRIQLGDQ ENSBTAP00000023960/1-619 VAQILESQRD FLNALQSPIE YQRRESQTNS LGRPGGPGVG SPGRIRPGDR bmy_03875T0/1-630 VAQILESQRD FLNALQSPIE YQRRESQTNS LGRPGGPGVG SPGRIRPGDR BACU008160/1-618 VAQILESQRD FLNALQSPIE YQRRESQTNS LGRPGGPGVG SPGRIRPGDR ENSTTRP00000015918/1-618 VAQILESQRD FLNALQSPIE YQRRESQTNS LGRPGGPGVG SPGRIRPGDR 601 650 ENSP00000335560/1-619 AQGSTHTPIN GSLPSLLLSP KGEVARALLP LDKQALGDIP QAPHDSPPVS ENSBTAP00000023960/1-619 AQLSTHTPIN GSLPSLLLSP KGEVARAPLR LDTQAPSAIP QAPHDSPPVP bmy_03875T0/1-630 AQVSTHTPIN GSLPSLLLFP KGQVARVPLS LDTQASSDIP QVPHDSPPVP BACU008160/1-618 AQVSTHTPIN GSLPSLLLFP KGQVARVPLS LDTQASSDIP QAPHDSPPVP ENSTTRP00000015918/1-618 AQVSTHTPIN GSLPSLLLFP KGQVARVPLS LDTQASSDIP QAPHDSPPVP 651 700 ENSP00000335560/1-619 PTPKTPPCQA RLAKLDEDEL ENSBTAP00000023960/1-619 PIPDTPPCQA RLAKLDEDEL bmy_03875T0/1-630 PIPNTPPCQA RLAKLDEDEL BACU008160/1-618 PIPNTPPCQA RLAKLDEDEL ENSTTRP00000015918/1-618 PIPNAPPCQA RLAKLDEDEL