KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:21:54 2014 Check: 00 .. Name: ENSP00000268793/1-513 Len: 718 Check: 4321 Weight: 1.00 Name: BACU018126/1-667 Len: 718 Check: 9916 Weight: 1.00 Name: ENSBTAP00000023962/1-481 Len: 718 Check: 6335 Weight: 1.00 Name: bmy_05240T0/1-562 Len: 718 Check: 2483 Weight: 1.00 Name: ENSTTRP00000001271/1-496 Len: 718 Check: 1922 Weight: 1.00 // 1 50 ENSP00000268793/1-513 ---------- ---------- ------MIRT PLSASAHRLL LPGSRGRPPR BACU018126/1-667 ---------- MPLVLRQFYN GLQDVNLCNF SHGQTSLDRL KDGLVGAQFW ENSBTAP00000023962/1-481 ---------- ---------- ---------- ---------- ---------- bmy_05240T0/1-562 MGPCASVERP DSSRFRRGRA AGSPTSTVGT PSSPSDPRPP LSGSRDPPLP ENSTTRP00000001271/1-496 ---------- ---------- ------MVGT PTSPSDSRSP LSGSRDPPLR 51 100 ENSP00000268793/1-513 N----MQPTG REGSR-ALSR RYLRRLLLLL LLLLLRQPVT RAET------ BACU018126/1-667 SAYVPCQTHE RDAVRLTLEQ IDLIRLMCAS YSEL--ELVT SVTALNNTRK ENSBTAP00000023962/1-481 -----MLSLG PERPH-VLIQ RPLLRLLLLL WLLL--RLVT SAQT------ bmy_05240T0/1-562 ACSALVPPVG RKAPR-ALTR WPLLRLLLLL WLLP--WPVT RART------ ENSTTRP00000001271/1-496 S----MLPVG LEAPR-ALTR RPLLRLLLLL WLLL--WPVT RAQT------ 101 150 ENSP00000268793/1-513 ------TPGA PRALSTLGSP SLFTTPG--- ---------- ---------V BACU018126/1-667 LACLIGVEGG HSLDSSLSIL RTFYALGVRY VTLTHTCNTP WAQSSAKGIH ENSBTAP00000023962/1-481 ------TPGG PSAQTTWGTP SALT------ ---------- ---------R bmy_05240T0/1-562 ------TQGT PSAST----- ---------- ---------- ---------R ENSTTRP00000001271/1-496 ------TQGT PSAST----- ---------- ---------- ---------R 151 200 ENSP00000268793/1-513 PSALTTPGLT TPG-----TP KTLDL----- ---RGRAQAL MR-------- BACU018126/1-667 PFYSNVSRLT GLGELDAVAR RALEVSQAPV IFSHSAARGV CKNTRNDPDA ENSBTAP00000023962/1-481 PATSSTP--T APG-----TP RGLSL----- ---QERARAL MR-------- bmy_05240T0/1-562 PDTSSAP--T VPG-----SP RAPSL----- ---HECARAL MR-------- ENSTTRP00000001271/1-496 PDTSSAP--T APG-----SP RASSL----- ---HERARAL MR-------- 201 250 ENSP00000268793/1-513 ---------- ---------- ---------- -------SFP LVDG------ BACU018126/1-667 TLQLLKKNGG IAMVPLSVRV LQCNPLANVP TVADHFDHIR AVTGCKFIGI ENSBTAP00000023962/1-481 ---------- ---------- ---------- -------HFR LVDG------ bmy_05240T0/1-562 ---------- ---------- ---------- -------DFR LVDG------ ENSTTRP00000001271/1-496 ---------- ---------- ---------- -------DFR LVDG------ 251 300 ENSP00000268793/1-513 ---------H NDLPQVLRQR YKNVLQDVNL RNFSHGQTSL DRLRDGLVGA BACU018126/1-667 GGDYDGAGRQ NHLPLLLKQH FRNKLQEVNL RNFSLGQTSL DKLRDGLVGA ENSBTAP00000023962/1-481 ---------H NHLPLLLKRH FQNKLQGVNL RNFRLGQTNL DKLRDGFVGA bmy_05240T0/1-562 ---------Q NHLPLLLKQH FRNKLQEVNL RNFSLGQTSL DKLRDGLVGA ENSTTRP00000001271/1-496 ---------K NHLPLFLKQH FRNELQEGNL RNFSLGQTSL DKLRDGLVGA 301 350 ENSP00000268793/1-513 QFWSASVSCQ SQDQTAVRLA LEQIDLIHRM CASYSELELV TSAEGLNSSQ BACU018126/1-667 QFWSAYAPCH TQDQDAVHLT REQIDLIRRV CASYSELELV TSARGLNSTQ ENSBTAP00000023962/1-481 QFWSAYAPCQ TQDQDAVRLT LEQIDLIRRM CDSYNELELV TSAEGLNSTQ bmy_05240T0/1-562 QFWSAYAPCH TQDQDAVRLT LEQIDLIRRV XASYSELELV TSARGLNSTQ ENSTTRP00000001271/1-496 QFWSAYTPCH TQDQDAVRLT LEQIDLIRRV CASYSELELV TSARGLNSTQ 351 400 ENSP00000268793/1-513 KLACLIGVEG GHSLDSSLSV LRSFYVLGVR YLTLTFTCST PW-------- BACU018126/1-667 KLACLIGVEG GHSLDSSLSV LRSFYLLGVR YLTLTFTCNT TWWDGWTKSL ENSBTAP00000023962/1-481 KLACLIGVEG GHSLDSSLAV LRSFYLLGVR YLTLTFTCNT PW-------- bmy_05240T0/1-562 KLACLIGVEG GHSLDSSLSV LRSFYLLGVC YLTLSFTCNT PW-------- ENSTTRP00000001271/1-496 KLACLIGVEG GHSLDSSLSV LRSFYLLGVR YLTLTFTCNT PW-------- 401 450 ENSP00000268793/1-513 ---------- ---------- -AESSTKFRH HMYTNVSGLT SFGEKVVEEL BACU018126/1-667 DVQALLAKVG PARLPSSGCP SGQSSTKFQH F-YTDISGLT SFGEKVIGEM ENSBTAP00000023962/1-481 ---------- ---------- -AESSTKFQL F-YTNISGLT SFGEKVIEEM bmy_05240T0/1-562 ---------- ---------- -AESSTKFQH F-YTNISGLT SFGEKVIGEM ENSTTRP00000001271/1-496 ---------- ---------- -AESSTKFQH F-YTNISGLT SFGEKVIGEM 451 500 ENSP00000268793/1-513 NRLGMMIDLS YASDTLIRRV LEVSQAPVIF SHSAARAVCD NLLNVPDDIL BACU018126/1-667 NRLGMMVDLS HVSMPWHRQA LKVSRAPVIF SHSAAKAVCD NMLNVPDDVL ENSBTAP00000023962/1-481 NRLGMMVDLS YGSHALAQQA LKVSKAPVIF SHSAAKAVCD NMLNIPDDIL bmy_05240T0/1-562 NRLGMMVDLS YGSDTLARQA LKVSRAPVIF SHSAAKAVCD NMLNVPDDIL ENSTTRP00000001271/1-496 NRLGMMVDLS YGSDTLARQA LKVSRAPVIF SHSAAKAVCN NMLNVPDDIL 501 550 ENSP00000268793/1-513 QLLKKNGGIV MVTLSMGVLQ CNLLANVSTV ADHFDHIRAV IGSEFIGIGG BACU018126/1-667 QLLKKNGGIV MVSLSTGVLP CNLFANVSTV ADHFDHIRAV TGSEFSGISG ENSBTAP00000023962/1-481 QLLKKNGGIV MVSLSMGVLQ CNLFANVSTV ADHFDHIRAV MGSEFIGISG bmy_05240T0/1-562 QLLKKNGGIV MVSLSTGVLP CNLFANVSTV ADHFDHIRAV TGSEFIGISG ENSTTRP00000001271/1-496 QLLKKNGGIV MVSLSTGVLP CNLFANVSTV ADHFDHIRAI TGSEFIGISG 551 600 ENSP00000268793/1-513 NYDGTGR--- ---------- ---------- ---------- ---FPQGLED BACU018126/1-667 NYDGSGR--- ---------- ---------- ---------- ---FPEGLED ENSBTAP00000023962/1-481 SYDGSGR--- ---------- ---------- ---------- ---FPEGLED bmy_05240T0/1-562 NYDGSGRSLK NTDLHFPHVA GAGMTVGPRP GSGPQLASWW PHXFPEGLED ENSTTRP00000001271/1-496 NYDGSGR--- ---------- ---------- ---------- ---FPQGLED 601 650 ENSP00000268793/1-513 VSTYPVLIEE LLSRSWSEEE LQGVLRGNLL RVFRQVEKVR EESRAQSPVE BACU018126/1-667 VSTYPVLIEE LLRRGWREEE LQGVLRGNLL RVFRQVKQVR EENSGQSPAE ENSBTAP00000023962/1-481 VSTYPVLIEE LLRRGWREEE LQGVLRGNLL RVFSQVEQVR EESKGQSPLE bmy_05240T0/1-562 VSTYPVLIEE LLRRGWREEE LQGVLRGNLL RVFRQMEQVR EENSGQSPVE ENSTTRP00000001271/1-496 VSTYPVLIEE LLRRGWREEE LQGVLRGNLL RVFRHVEQVR EENSGQSPAE 651 700 ENSP00000268793/1-513 AEFPYGQLST SCHSH-LV-P QNGHQATHLE VTKQPTNRVP WRSSNASPYL BACU018126/1-667 DEFPNRQVGR SCHSH-LTQP QNEHLAAHHV GNKWPTNQAL QRPSKASPHV ENSBTAP00000023962/1-481 DEFPNRQVGR SCHSHLLTQP QSKPRATHRV RNKWLTNQAL QRPPKASLQL bmy_05240T0/1-562 DEFPNRQVGR SCHSH-LTQP QNEHLAAHRV GNKWPTNQAL QRPSKASPHI ENSTTRP00000001271/1-496 DEFPNRQVGR SCHSH-LTQP QNEHLATHRV GNKWPTNQAL QRPSKASPHL 701 750 ENSP00000268793/1-513 VPGLVAAATI PTFTQWLC BACU018126/1-667 VLGLMAAATF SILILWL- ENSBTAP00000023962/1-481 VLGLVAAVTF SVLILWL- bmy_05240T0/1-562 VLGLMAAATF SILILWL- ENSTTRP00000001271/1-496 VLGLMAAATF SILILWL-