KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:21:54 2014 Check: 00 .. Name: ENSP00000320217/1-563 Len: 738 Check: 6106 Weight: 1.00 Name: ENSBTAP00000023967/1-490 Len: 738 Check: 8529 Weight: 1.00 Name: bmy_03874T0/1-641 Len: 738 Check: 2623 Weight: 1.00 Name: BACU008162/1-695 Len: 738 Check: 7903 Weight: 1.00 // 1 50 ENSP00000320217/1-563 -MRLDLASLM SAP------- KSLGSAFK-- ---------- ---------- ENSBTAP00000023967/1-490 MSGLPGARTC PGPGEASDLK SPLSAKFREP LTETRFQQLF GDAEQEPELL bmy_03874T0/1-641 MSGLPDASTC PGPGEASDLK SPLGAKFREP LTEARFQQLF GDAEQEPKLL BACU008162/1-695 MSGLPSASTC PGPGEASDLK SPLGAKFREP LTEARFQQLF GDAEQEAELL 51 100 ENSP00000320217/1-563 ---------- ---------- ---SWRLDKA PSPQHTFPS- ---------- ENSBTAP00000023967/1-490 AEPRWS---R LWRRRASACS GPGAWRLLLA RLPPLRWLPH YRWRAWLLGD bmy_03874T0/1-641 AEPRWSRLRR LWRRRARACS GPGAWRLLRA RLPPLRWLPH YRWRPWLLGD BACU008162/1-695 AEPRWSRLRR LWRRRARACS GPGAWRLLRA RLPPLRWLPH YRWRPWLLGD 101 150 ENSP00000320217/1-563 ---------T SIP-GMAFAL LASVPPVFGL YTSFFPVLIY SLLGTGRHLS ENSBTAP00000023967/1-490 AVAGLTVGIV HVPQGMAFAL LTSVPPVFGL YTSFFPVLIY TLLGTGRHLS bmy_03874T0/1-641 AVAGVTVGIV HVPQGMAFAL LTSVPPVFGL YTSFFPVLIY TLLGTGRHLS BACU008162/1-695 AVAGVTVGIV HVPQGMAFAL LTSVPPVFGL YTSFFPVLIY TLLGTGRHLS 151 200 ENSP00000320217/1-563 TGTFAILSLM TGSAVERLVP EPLVGNLSGI EKEQLDAQRV GVAAAVAFGS ENSBTAP00000023967/1-490 TGTFAVLSLM TGSAVERLVP EPLSGNLSGI EKEQLDAQRV GAAAAVAFGS bmy_03874T0/1-641 TGTFAVLSLM TGSAVERLVP EPLEGNLSGI EREQLDAQRV GAAAAMAFGS BACU008162/1-695 TGTFAVLSLM TGSAVERLVP EPLEGNLSGI EREQLDAQRV GAAAAMAFGS 201 250 ENSP00000320217/1-563 GALMLGMFVL QLGVLSTFLS EPVVKALTSG AALHVLLSQL PSLLGLSLPR ENSBTAP00000023967/1-490 GALMLGMFAL QLGVLATFLS EPVVKALTSG AALHVLVSQL PSLLGVPLPR bmy_03874T0/1-641 GALMLGMFAL QLGVLATFLS EPVVKALTSG AALHVLVSQL PSLLGLPLPR BACU008162/1-695 GALMLGMFAL QLGVLATFLS EPVVKALTSG AALHVLVSQL PSLLGLPLPR 251 300 ENSP00000320217/1-563 QIGCFSLFKT LASLLTALPR SSPAELTISA LSLALLVPVK ELNVRFRDRL ENSBTAP00000023967/1-490 QIGCFALFKT LAAVLTALPR SSPAELTISA LSLALLVPVK ELNVRFRDRL bmy_03874T0/1-641 QIGCFALFKT LAAVLTALPR SSPAELTVSA LSLALLVPVK ELNVRFRDRL BACU008162/1-695 QIGCFALFKT LAAVLTALPR SSPAELTVSA LSLALLVPVK ELNVRFRDRL 301 350 ENSP00000320217/1-563 PTPIPGEVVL VLLASVLCFT SSVDTRYQVQ IVGLLPGGFP QPLLPNLAEL ENSBTAP00000023967/1-490 PTPIPGEIAM VLLASVLCFT SSLDTRYNVQ IVGLLPGGFP QPLLPSLAEL bmy_03874T0/1-641 PTPIPGEIVM VLLASVLCFT SSLDTRYNVQ IVGLLPGGFP QPLLPSLAEL BACU008162/1-695 PTPIPGEIVM VLLASVLCFT SSLDTRYNVQ IVGLLPGGFP QPLLPSLAEL 351 400 ENSP00000320217/1-563 PRILADSLPI ALVSFAVSAS LASIHADKYS YTIDSNQEFL AHGASNLISS ENSBTAP00000023967/1-490 PRILADSLPM ALVTFAVSAS LASIYADKYS YTIDSNQELL AHGVSNLVSS bmy_03874T0/1-641 PRIMADSLPM ALVTFAVSAS LASIYADKYS YTIDSNQELF AHGVSNLISS BACU008162/1-695 PRILADSLPM ALVTFAVSAS LASIYADKYS YTIDSNQELF AHGVSNLISS 401 450 ENSP00000320217/1-563 LFSCFPNSAT LATTNLLVDA GGKTQLA-GL FSCTVVLSVL L--------- ENSBTAP00000023967/1-490 LFSCFPNSAT LATTSLLVDA GGNTQLA-GL FSCMVVLSVL L--------- bmy_03874T0/1-641 LFSCFPNSAT LATTSLLVDA AGRPLLLYGC PVCAAVAGAL LLLSAQGKQQ BACU008162/1-695 LFSCFPNSAT LATTSLLVDA GGNTQLA-GL FSCMVVLSVL L--------- 451 500 ENSP00000320217/1-563 ---------W -----LGPFF YYL-PKAVLA CINISSMRQV FCQMQELPQL ENSBTAP00000023967/1-490 ---------W -----LGPLF YYL-PKAVLA CINISSMRQM FFQMRELPQL bmy_03874T0/1-641 RRWRGGWEGW RHPCTLGWSA YLLCPKAVLA CINISSMRQM FFQMRELPQL BACU008162/1-695 ---------W -----LGPFF YYL-PKAVLA CINIASMRQM FFQMRELPQL 501 550 ENSP00000320217/1-563 WHISRVDF-- ---------- ---------- ---------- ---------- ENSBTAP00000023967/1-490 WRISRVDF-- ---------- ---------- ---------- ---------- bmy_03874T0/1-641 WRISRVDF-- ---------- ---------- ---------- ---------- BACU008162/1-695 WRISRVDFAV WMVTWVAVVT LSVDLGLAVG VVFSMMTVVC RTQRVQCLAL 551 600 ENSP00000320217/1-563 ---------- -------LLQ VPGLCILSYP TPLYFGTRGQ FRCNLEWHLG ENSBTAP00000023967/1-490 ---------- ---------- ---------- ---------- ---------- bmy_03874T0/1-641 ---------- -------LLQ VPGLCILSYP TPLYFGTRGQ FRRILEWHLG BACU008162/1-695 GLAEGTELYR PLRESHKLLQ VPGLCILSYP TPLYFGTRGR FRRILEWHLG 601 650 ENSP00000320217/1-563 LGEGEKETSK PDGPM----- ---------- --VAVAEPVR VVVLDFSGVT ENSBTAP00000023967/1-490 ------VRN- ---------- ---------- ---------- ---------- bmy_03874T0/1-641 LGEGGKVRDL VKGKF----- ---------- -----AEPVR VVVLDCSGVT BACU008162/1-695 LGEGGKVRDL VKGEYGFFGG GRQEAPRTDG PPDAVAEPVR VVVLDCSGVT 651 700 ENSP00000320217/1-563 FADAAGAREV VQVRERLASR CRDARIRLLL AQCNALVQGT LTRVGLLDRV ENSBTAP00000023967/1-490 -----GS--- ------IALR C--------- ---------- ---------- bmy_03874T0/1-641 FADAAGAREV VQ----LASR CREAGIHLLL AQCNASVLGT LTQAGLLDRV BACU008162/1-695 FADAAGAREV VQ----LASR CRDARIHLLL AQCNASVLGT LTQAGLLDRV 701 750 ENSP00000320217/1-563 TPDQLFVSVQ DAAAYALGSL LRGSSTRSGS QEALGCGK ENSBTAP00000023967/1-490 ---------- ---------- ---------- -------- bmy_03874T0/1-641 TPEQLFVSVQ DAAAYALERL VRRQ------ -------- BACU008162/1-695 TPEQLFVSVQ DAAAYALERL VRRQ------ --------