KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:21:55 2014 Check: 00 .. Name: ENSP00000349365/1-243 Len: 300 Check: 6638 Weight: 1.00 Name: ENSBTAP00000023979/1-235 Len: 300 Check: 8478 Weight: 1.00 Name: bmy_00790T0/1-265 Len: 300 Check: 3648 Weight: 1.00 Name: BACU011904/1-231 Len: 300 Check: 2992 Weight: 1.00 // 1 50 ENSP00000349365/1-243 ---------- ---------- ---------M GQTAGDLGWR LSLLLLPLLL ENSBTAP00000023979/1-235 ---------- ---------- ---------M GQTAGNLGWR LSLLLLFLLL bmy_00790T0/1-265 ---------- ---------- ---------M GQTAGDLGWR LSLLLLSLLL BACU011904/1-231 MATFPRADSP SRQPPGPEDE DPNLDEYDLY SLAHSHLG-- LSLLLLSLLL 51 100 ENSP00000349365/1-243 VQAGVWGFPR PPGRPQLSLQ ELRREFTVSL HLARKLLSEV RGQAHRF--- ENSBTAP00000023979/1-235 ARAGVWGFPR PPGRPPLSLQ ELQREFKVSL HLARKLLSEV RVQAHHF--- bmy_00790T0/1-265 ARAGVWGFPR PPGRPLRSLQ ELQREFKVSL HLARKLLSEV RVQARDFVSL BACU011904/1-231 ARAGVWGFPR PPGRPLRSLQ ELQREFKVSL HLARKLLSEV RVQARDF--- 101 150 ENSP00000349365/1-243 ---------- ---------- -----AESHL PGVNLYLLPL GEQLPDVSLT ENSBTAP00000023979/1-235 ---------- ---------- -----AESHL PGVNLDLLPL AEQLPNVSTT bmy_00790T0/1-265 PNAAGSGDGK IRNPLGPLLK DPAPQAESHL PGVNLDLLPL GEQLPNVSLT BACU011904/1-231 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000349365/1-243 FQAWRRLSDP ERLCFISTTL QPFHALLGGL GTQGRWTNME RMQLWAMRLD ENSBTAP00000023979/1-235 FQAWRGLSAL SRIDLVMEWM E--TGVVLGL GKQEFWTSSE RMQLQATRLD bmy_00790T0/1-265 FQAWRGLSDP ERLRFLSMTL HPFHTLLGGL GSQGFWTSSE RLQLWAMRLD BACU011904/1-231 --------DP ERLRFLSMTL HPFHTLLGGL GRQGFWTSSE RLHLWAMRLD 201 250 ENSP00000349365/1-243 LRDLQRHLRF QVLAAGFNLP EEEEEEEEEE EEERKGLLPG ALGSALQGPA ENSBTAP00000023979/1-235 LRDLQQHLRF QVLAAGFNLP EEHENEEEK- -----GLLPG ALGAPLQISA bmy_00790T0/1-265 LRDLQQHLRF QVLAAGFNLP EEEENEEGE- -----GLLPG ALGGPLQMSA BACU011904/1-231 LRDLQQHLRF QVLAAGFNVP EEEENEEGE- -----GLLPG ALGGPLQMSA 251 300 ENSP00000349365/1-243 QVSWPQLLST YRLLHSLELV LSRAVRELLL LSKAGHSVWP LGFPTLSPQP ENSBTAP00000023979/1-235 QVSWSRFLYT YRLLHSLELL LSRTVRDLLL LSRAGNSVQA LGFPTPSSQP bmy_00790T0/1-265 QVSWPRLLYT YQSLHSLEIV LSRAVRDLLL LSQAGNXAQA LGFPTPSSQP BACU011904/1-231 QASWPRLLYT YQSLHSLEIV LSRAVRDLLL LSQAGNSAQA LGFPTPSSQP