KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:21:55 2014 Check: 00 .. Name: BACU007699/1-428 Len: 942 Check: 1849 Weight: 1.00 Name: bmy_02550T0/1-546 Len: 942 Check: 8037 Weight: 1.00 Name: ENSTTRP00000011506/1-897 Len: 942 Check: 6951 Weight: 1.00 Name: ENSP00000349723/1-894 Len: 942 Check: 8156 Weight: 1.00 Name: ENSBTAP00000023987/1-904 Len: 942 Check: 140 Weight: 1.00 // 1 50 BACU007699/1-428 MGEKA----- ---------- EPEHVEATIL EEDEGLEIEE PSSLGLMVGG bmy_02550T0/1-546 MVEGR----- ---------- TCPHLSCSRE ALGEEVQAGE AASFTRRLRT ENSTTRP00000011506/1-897 MSRRKQGNPQ HLSQRELITP EPEHVEATIL EEDEGLEIEE PSSLGLMVGG ENSP00000349723/1-894 MSRRKQGNPQ HLSQRELITP EADHVEAAIL EEDEGLEIEE PSGLGLMVGG ENSBTAP00000023987/1-904 MSRRKQGNPQ HLSQREIITP EPEHVEAAIL EEDEGLEIEE PGSLGLMVGG 51 100 BACU007699/1-428 PDPDLLTCGQ CQMNFPLGDI LVFIEHKKKQ CGGSLGGCYD KGLDKGSPPP bmy_02550T0/1-546 LATKEVLVGR CGLHF----V MTLMMDEDRD ---ALAPCHQ R-------PL ENSTTRP00000011506/1-897 PDPDLLTCGQ CQMNFPLGDI LVFIEHKKKQ CGGSLGGCYD KGLDKGSPPP ENSP00000349723/1-894 PDPDLLTCGQ CQMNFPLGDI LVFIEHKRKQ CGGSLGACYD KALDKDSPPP ENSBTAP00000023987/1-904 PDPDLLTCGQ CQMNFPLGDI LVFIEHKKKQ CGGSLGACYD KGLDKGSPPP 101 150 BACU007699/1-428 SSRSELRKVS EPVEIGIQVT PDED------ ---------- -DHLLSPTKG bmy_02550T0/1-546 RLAPDVTRAS QEGNGGGQLS PSSDVHDMPN AFCSYVSVFK FDSAFCTDPG ENSTTRP00000011506/1-897 SSRSELRKVS EPVEIGIQVT PDED------ ---------- -DHLLSPTKG ENSP00000349723/1-894 SSRSELRKVS EPVEIGIQVT PDED------ ---------- -DHLLSPTKG ENSBTAP00000023987/1-904 SSRSELRKVS EPVEIGIQVT PDED------ ---------- -DHLLSPTKG 151 200 BACU007699/1-428 ICPKQENIAG LSRGGGGGSE PSPRPWGLGA ACRCRLLRTV GRRGHWLAVL bmy_02550T0/1-546 VACLVRALPG P--PAHRAGF FSPSAGDLPG GRRPGPAQKP SR------CC ENSTTRP00000011506/1-897 ICPKQETIAG PCRPAQLPA- MAPIAAS-SS HPHTSVITSP LR------AL ENSP00000349723/1-894 ICPKQENIAG PCRPAQLPA- VAPIAA--SS HPHSSVITSP LR------AL ENSBTAP00000023987/1-904 VCPKQENLAG PCRPAQLPA- MAPIAAT-SS HPHPSAITSP LR------AL 201 250 BACU007699/1-428 RAGGSAVPRR WEVAWRCPRP APAAHPDRAN SGGLELPGRE RSNQPLRNKR bmy_02550T0/1-546 RPQEPRIPGR TRPRLASRSV APWCASPRPP LLTLSLPFRP -CVSP----- ENSTTRP00000011506/1-897 GALPPCFP-- ----LPCCSA RPVSGDGTQG EGQTEAPFGC QCQLS----- ENSP00000349723/1-894 GALPPCLP-- ----LPCCSA RPVSGDGTQG EGQTEAPFGC QCQLS----- ENSBTAP00000023987/1-904 GALPPCVP-- ----LPCCSA LPGSGDGTQG EGQTEAPFGC QCQLS----- 251 300 BACU007699/1-428 GEKKPSHQIS GRLRR----- ---------- ---------- -----FSAIE bmy_02550T0/1-546 GKDEPSSYIC TTCKQPFNSA WFLLQHAQNT HGFRIYLEPG PASSSLTPRL ENSTTRP00000011506/1-897 GKDEPSSYIC TTCKQPFNSA WFLLQHAQNT HGFRIYLEPG PASSSLTPRL ENSP00000349723/1-894 GKDEPSSYIC TTCKQPFNSA WFLLQHAQNT HGFRIYLEPG PASSSLTPRL ENSBTAP00000023987/1-904 GKDEPSSYIC TTCKQPFNSA WFLLQHAQNT HGFRIYLEPG PASSSLTPRL 301 350 BACU007699/1-428 NIDSSQNSAA VETSPLIELG KEENENTESG ASSSRLRFSP GFGGGMLGPR bmy_02550T0/1-546 TIPPPLGPEA VAQSPLMNFL GDSNPFNLLR MTGPILRDHP GFGEGRLPGT ENSTTRP00000011506/1-897 TIPPPLGPEA VAQSPLMNFL GDSNPFNLLR MTGPILRDHP GFGEGRLPGT ENSP00000349723/1-894 TIPPPLGPEA VAQSPLMNFL GDSNPFNLLR MTGPILRDHP GFGEGRLPGT ENSBTAP00000023987/1-904 TIPPPLGPEA VAQSPLMNFL GDSNPFNLLR MTGPILRDHP GFGEGRLPGT 351 400 BACU007699/1-428 FEAVVKPEGP VLQP------ ---------- ---------- ---------- bmy_02550T0/1-546 PPLFSPPPRH HLDPHRLSAE EMGLVAQHPS AFDR------ ---------- ENSTTRP00000011506/1-897 PPLFSPPPRH HLDPHRLSAE EMGLVAQHPS AFDRVMRLNP MAIDSPAMDF ENSP00000349723/1-894 PPLFSPPPRH HLDPHRLSAE EMGLVAQHPS AFDRVMRLNP MAIDSPAMDF ENSBTAP00000023987/1-904 PPLFSPPPRH HLDPHRLSAE EMGLVAQHPS AFDRVMRLNP MAIDSPAMDF 401 450 BACU007699/1-428 ---------- ---------- ---------- ---------- ---------- bmy_02550T0/1-546 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011506/1-897 SRRLRELAGN SSTPPPVSPG RGNPMHRLLN PFQPSPKSPF LSTPPLPPMP ENSP00000349723/1-894 SRRLRELAGN SSTPPPVSPG RGNPMHRLLN PFQPSPKSPF LSTPPLPPMP ENSBTAP00000023987/1-904 SRRLRELAGN SSTPPPVSPG RGNPMHRLLN PFQPSPKSPF LSTPPLPPMP 451 500 BACU007699/1-428 ---------- ---------- ---------- ---------- ---------- bmy_02550T0/1-546 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011506/1-897 PGGTPPPQPP AKSKSCEFCG KT-KFQSNLI VHRRSHTGEK PYKCQLCDHA ENSP00000349723/1-894 PGGTPPPQPP AKSKSCEFCG KTFKFQSNLI VHRRSHTGEK PYKCQLCDHA ENSBTAP00000023987/1-904 PGGTPPPQPP AKSKSCEFCG KTFKFQSNLI VHRRSHTGEK PYKCQLCDHA 501 550 BACU007699/1-428 ---------- ---------- ---------- ---------- ---------- bmy_02550T0/1-546 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011506/1-897 CSQASKLKRH MKTHMHKAGS LAGRSDDGLS AASSPEPGTS ELAGEGLKAA ENSP00000349723/1-894 CSQASKLKRH MKTHMHKAGS LAGRSDDGLS AASSPEPGTS ELAGEGLKAA ENSBTAP00000023987/1-904 CSQASKLKRH MKTHMHKAGS LAGRSDDGLS AASSPEPGTS ELTGEGLKAA 551 600 BACU007699/1-428 ---------- ---------- ---------- ---------- ---------- bmy_02550T0/1-546 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011506/1-897 DGDFRHHESD PSLGHEPEEE DEEEEDEEEE LLLENESRPE SSFSMDSELS ENSP00000349723/1-894 DGDFRHHESD PSLGHEPEEE DEEEEEEEEE LLLENESRPE SSFSMDSELS ENSBTAP00000023987/1-904 DGDFRHHESD PSLGHEPEEE DEEEEEEEEE LLLENESRPE SSFSMDSELS 601 650 BACU007699/1-428 ---------- ---------- ---------- ---------- ---------- bmy_02550T0/1-546 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011506/1-897 RNREN----- GGGGVAGVPG AGGGVGGAAK ALADEKALVL GKVMENVGLG ENSP00000349723/1-894 RNREN----- GGGGVPGVPG AGG--G-AAK ALADEKALVL GKVMENVGLG ENSBTAP00000023987/1-904 RNRENGGGGG GGGGVAGVPG AGG--GAAAK ALADEKALVL GKVMENVGLG 651 700 BACU007699/1-428 ---------- ---------- ---------- ---------- ---------- bmy_02550T0/1-546 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011506/1-897 ALPRYGELLA DEHIRDAFLK RLA---GVGD PGEEDDAGGF CDAGPGSSVN ENSP00000349723/1-894 ALPQYGELLA DKQKRGAFLK RAA---GGGD AGDDDDAGGC GDAGAGGAVN ENSBTAP00000023987/1-904 ALPPYGDLLA DKQKRGAFLK RAAGGGGGGD PGDDDDAGGC GDAGPGGAVN 701 750 BACU007699/1-428 ---------- ---------- ---------- ---------- --ELTPGI-- bmy_02550T0/1-546 ---------- ---------- ---------- -------VEK DLELPPAALI ENSTTRP00000011506/1-897 VRGGGFEPGA ELFPGLFPRK PAPLPNPGLN SAAKRIKVEK DQELPPAALI ENSP00000349723/1-894 GRGGGFAPGT EPFPGLFPRK PAPLPSPGLN SAAKRIKVEK DLELPPAALI ENSBTAP00000023987/1-904 GRGGGFAPGT EPFPGLFPRK PAPLPSPGLN SAAKRIKVEK DLELPPAALI 751 800 BACU007699/1-428 ---------- ---------- ---------- ---------- -----GSTKL bmy_02550T0/1-546 PSENVYSQWL VGYAASRHFM KDPFLGFTDA RQSPFATSSE HSSENGSLRF ENSTTRP00000011506/1-897 PSENVYSQWL VVYAASRHFM KDPLLGFTDA LQSPFATLFE HSFENGSLRF ENSP00000349723/1-894 PSENVYSQWL VGYAASRHFM KDPFLGFTDA RQSPFATSSE HSSENGSLRF ENSBTAP00000023987/1-904 PSENVYSQWL VGYAASRHFM KDPFLGFTDA RQSPFATSSE HSSENGSLRF 801 850 BACU007699/1-428 TSAAGTL--- ---------- ---------- ----SGSKEG RRSDTCEYCG bmy_02550T0/1-546 STPPGDLLDG GLSGRSGTAS GGSTPHLGGP GPGRPSSKEG RRSDTCEYCG ENSTTRP00000011506/1-897 STPPGDLLDG GLSGRSGTAS GGSTPHLGGP GPGRPSSKEG RRSDTCEYCG ENSP00000349723/1-894 STPPGDLLDG GLSGRSGTAS GGSTPHLGGP GPGRPSSKEG RRSDTCEYCG ENSBTAP00000023987/1-904 STPPGDLLDG GLSGRSGTAS GGSTPHLGGP GPGRPSSKEG RRSDTCEYCG 851 900 BACU007699/1-428 KVFKNCSNLT VHRRSHTGER PYKCELCNYA CAQSSKLTRH MKTHGQIGKE bmy_02550T0/1-546 KVFKNCSNLT VHRRSHTGER PYKCELCNYA CAQSSKLTRH MKTHGQIGKE ENSTTRP00000011506/1-897 KVFKNCSNLT VHRRSHTGER PYKCELCNYA CAQSSKLTRH MKTHGQIGKE ENSP00000349723/1-894 KVFKNCSNLT VHRRSHTGER PYKCELCNYA CAQSSKLTRH MKTHGQIGKE ENSBTAP00000023987/1-904 KVFKNCSNLT VHRRSHTGER PYKCELCNYA CAQSSKLTRH MKTHGQIGKE 901 950 BACU007699/1-428 VYRCDICQMP FSVYSTLEKH MKKWHGEHLL TNDVKIEQAE RS bmy_02550T0/1-546 VYRCDICQMP FSVYSTLEKH MKKWHGEHLL TNDVKIEQAE RS ENSTTRP00000011506/1-897 VYRCDICQMP FSVYSTLEKH MKKWHGEHLL TNDVKIEQAE RS ENSP00000349723/1-894 VYRCDICQMP FSVYSTLEKH MKKWHGEHLL TNDVKIEQAE RS ENSBTAP00000023987/1-904 VYRCDICQMP FSVYSTLEKH MKKWHGEHLL TNDVKIEQAE RS