KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:22:00 2014 Check: 00 .. Name: ENSP00000395983/1-1087 Len: 1123 Check: 294 Weight: 1.00 Name: ENSTTRP00000008780/1-1086 Len: 1123 Check: 9307 Weight: 1.00 Name: ENSBTAP00000024019/1-1086 Len: 1123 Check: 5149 Weight: 1.00 Name: BACU018125/1-968 Len: 1123 Check: 726 Weight: 1.00 Name: bmy_05241T0/1-1116 Len: 1123 Check: 7152 Weight: 1.00 // 1 50 ENSP00000395983/1-1087 -----MRAGG ACRPGAAGTA AGTAAGGWDG GCGGAEPARC LTSPWCQWTG ENSTTRP00000008780/1-1086 MPHFTVVPVD GPRRGDYDNL EGIS---WVD YGERADREDS EXXXXXXXXX ENSBTAP00000024019/1-1086 MPHFTVVPVD GPRRGDYDNL EGLS---WVD YGERADREDA DGHGNHKESS BACU018125/1-968 ---------- ---------- ---------- ---------- ---------- bmy_05241T0/1-1116 MPHFTVVPVD GPRRGDYDNL EGLS---WVD YGERADRENS EGHGNHKESS 51 100 ENSP00000395983/1-1087 RGAATMTTSR GSVGWTTGSA PSWMTRTEEL DIRPKVSSLL GKLVSYTNLT ENSTTRP00000008780/1-1086 XXXXXXXXXX XX----XXXX XXXXXXXEEL DIRPKVSSLL GKLVSYTNLT ENSBTAP00000024019/1-1086 PFLCPMEASR GS----DYHD RNLALFEEEL DIRPKVSSLL GKLVSYTNLT BACU018125/1-968 -----MEASR GS----DYHD RNLALFEEEL DIRPKVSSLL GKLVSYTNLT bmy_05241T0/1-1116 PFLCPMEASR GS----DYHD RNLALFEEEL DIRPKVSSLL GKLVSYTNLT 101 150 ENSP00000395983/1-1087 QGAKEHEEAE SGEGTRRRAA EAPSMGTLMG VYLPCLQNIF GVILFLRLTW ENSTTRP00000008780/1-1086 QGAKEHEEAE SGEGARRRAA KAPSMGTLMG VYLPCLQNIF GVILFLRLTW ENSBTAP00000024019/1-1086 QGAKEHEEAE SGEGARRRAA KAPSMGTLMG VYLPCLQNIF GVILFLRLTW BACU018125/1-968 QGAKEHEEAE SGEGTRRRAA KAPSMGTLMG VYLPCLQNIF GVILFLRLTW bmy_05241T0/1-1116 QGAKEHEEAE SGEGTRRRAA KAPSMGTLMG VYLPCLQNIF GVILFLRLTW 151 200 ENSP00000395983/1-1087 MVGTAGVLQA LLIVLICCCC TLLTAISMSA IATNGVVPAG GSYFMISRSL ENSTTRP00000008780/1-1086 MVGTAGVLQA LLIVLICCCC TLLTAISMSA IATNGVVPAG GSYFMISRSL ENSBTAP00000024019/1-1086 MVGTAGVLQA LLIVLICCCC TLLTAISMSA IATNGVVPAG GSYFMISRSL BACU018125/1-968 MVGTAGVLQA LLIVLICCCC TLLTAISMSA IATNGVVPAG GSYFMISRSL bmy_05241T0/1-1116 MVGTAGVLQA LLIVLICCCC TLLTAISMSA IATNGVVPAG GSYFMISRSL 201 250 ENSP00000395983/1-1087 GPEFGGAVGL CFYLGTTFAA AMYILGAIEI LLTYIAPPAA IFYPSGAHDT ENSTTRP00000008780/1-1086 GPEFGGAVGL CFYLGTTFAA AMYILGAIEI LLTYIAPPAA IFYPTGTHDM ENSBTAP00000024019/1-1086 GPEFGGAVGL CFYLGTTFAA AMYILGAIEI LLTYIAPPAA IFYPIGTHDT BACU018125/1-968 GPEFGGAVGL CFYLGTTFAA AMYILGAIEI LLTYIAPPAA IFYPTGTHDM bmy_05241T0/1-1116 GPEFGGAVGL CFYLGTTFAA AMYILGAIEI LLTYIAPPAA IFYPTGTHDM 251 300 ENSP00000395983/1-1087 SNATLNNMRV YGTIFLTFMT LVVFVGVKYV NKFASLFLAC VIISILSIYA ENSTTRP00000008780/1-1086 SSATLNNMRV YGTIFLTFMT LVVFVGVKYV NKFASLFLAC VIISILSIYA ENSBTAP00000024019/1-1086 SSATLNNMRV YGTIFLTFMT LVVFVGVKYV NKFASLFLAC VIISILSIYA BACU018125/1-968 SSATLNNMRV YGTIFLTFMT LVVFVGVKYV NKFASLFLAC VIISILSIYA bmy_05241T0/1-1116 SSATLNNMRV YGTIFLTFMT LVVFVGVKYV NKFASLFLAC VIISILSIYA 301 350 ENSP00000395983/1-1087 GGIKSIFDPP VFPVCMLGNR TLSRDQFDIC AKTAVVDNET VATQLWSFFC ENSTTRP00000008780/1-1086 GGIKSIFDPP VFPVCMLGNR TLSRDQFDVC AKTAVVDNET VATRLWSLFC ENSBTAP00000024019/1-1086 GGIKSIFDPP VFPVCMLGNR TLSRDQFDVC AKTAVVDNET VATQLWSLFC BACU018125/1-968 GGIKSIFDPP VFPVCMLGNR TLSRDQFDVC AKTALVDNET VATRLWSLFC bmy_05241T0/1-1116 GGIKSIFDPP VFPVCMLGNR TLSRDQFDVC AKTAVVDNET VATRLWSLFC 351 400 ENSP00000395983/1-1087 HSPNLTTDSC DPYFMLNNVT EIPGIPGAAA GVLQENLWSA YLEKGDIVEK ENSTTRP00000008780/1-1086 HSPNLTADSC DPYFLLNNVT EIPGIPGAAA GVLQENLWST YLEKGEVVEK ENSBTAP00000024019/1-1086 HGPNLTAESC DPYFLLNNVT EIPGIPGAAA GVLQENLWSA YLEKGEVVEK BACU018125/1-968 HSPNLTADSC DPYFLLNNVT EIPGIPGAAA GVLQENLWSA YLEKGEAVEK bmy_05241T0/1-1116 HSPNITADSC DPYFLLNNVT EIPGIPGAAA GVLQENLWSA YLEKGEVVEK 401 450 ENSP00000395983/1-1087 HGLPSADAPS LKESLPLYVV ADIATSFTVL VGIFFPSVTG IMAGSNRSGD ENSTTRP00000008780/1-1086 HGLPSTDALG LKESLPLYVV ADIATSFTVL VGIFFPSVTG IMAGSNRSGD ENSBTAP00000024019/1-1086 HGLPSTDALG LKESLPLYVV ADIATSFTVL VGIFFPSVTG IMAGSNRSGD BACU018125/1-968 HGLPSTDALG LKESLPLYVV ADITTSFTVL VGIFFPSV-- ---------- bmy_05241T0/1-1116 HGLPSTDALG LKESLPLYVV ADIATSFTVL VGIFFPSVTG IMAGSNRSGD 451 500 ENSP00000395983/1-1087 LRDAQKSIPV GTILAIITTS L--------- ---------- ---------- ENSTTRP00000008780/1-1086 LRDAQKSIPV GTILAIVTTS L--------- ---------- ---------- ENSBTAP00000024019/1-1086 LRDAQKSIPV GTILAIVTTS L--------- ---------- ---------- BACU018125/1-968 ---------- ---------- ---------- ---------- ---------- bmy_05241T0/1-1116 LRDAQKSIPV GTILAIVTTS LLRLGRGTLG RCAGMHGDGS GSGGRAFLDS 501 550 ENSP00000395983/1-1087 -VYFSSVVLF GACIEGVVLR DKYGDGVSRN LVVGTLAWPS PWVIVIGSFF ENSTTRP00000008780/1-1086 -VYFSSVVLF GACIEGVVLR DKYGDGVSRN LVVGTLAWPS PWVIVIGSFF ENSBTAP00000024019/1-1086 -VYFSSVVLF GACIEGVVLR DKYGDGVSRN LVVGTLAWPS PWVIVIGSFF BACU018125/1-968 -TDFSSVVLF GACIEGVVLR DK-------N LVVGTSAWPS PWVIVIGSFF bmy_05241T0/1-1116 ATDFSSVVLF GACIEGVVLR DKYGDGVSRN LVVGTLAWPS PWVIVIGSFF 551 600 ENSP00000395983/1-1087 STCGAGLQSL TGAPRLLQAI AKDNIIPFLR VFGHGKVNGE PTWALLLTAL ENSTTRP00000008780/1-1086 STCGAGLQSL TGAPRLLQAI AKDNIIPFLR VFGHGKANGE PTWALLLTAL ENSBTAP00000024019/1-1086 STCGAGLQSL TGAPRLLQAI AKDNIIPFLR VFGHGKANGE PTWALLLTAL BACU018125/1-968 STCGAGLQSL TGAPRLLQAI AKDNIIPFLR VFGHGKANGE PTWALLLTAL bmy_05241T0/1-1116 STCGAGLQSL TGAPRLLQAI AKDNIIPFLR VFGHGKANGE PTWALLLTAL 601 650 ENSP00000395983/1-1087 IAELGILIAS LDMVAPILSM FFLMCYLFVN LACAVQTLLR TPNWRPRFKY ENSTTRP00000008780/1-1086 IAELGILIAS LDMVAPILSM FFLMCYLFVN LACAVQTLLR TPNWRPRFKY ENSBTAP00000024019/1-1086 IAELGILIAS LDMVAPILSM FFLMCYLFVN LACAVQTLLR TPNWRPRFKY BACU018125/1-968 IAELGILIAS LDMVAPILSM FFLMCYLFVN LACAVQTLLR TPNWRPRFKY bmy_05241T0/1-1116 IAELGILIAS LDMVAPILSM FFLMCYLFVN LACAVQTLLR TPNWRPRFKY 651 700 ENSP00000395983/1-1087 YHWALSFLGM SLCLALMFVS SWYYALVAML IAGMIYKYIE YQGAEKEWGD ENSTTRP00000008780/1-1086 YHWALSFLGM SLCLALMFVS SWYYALVAML IAGMIYKYIE YQGAEKEWGD ENSBTAP00000024019/1-1086 YHWALSFLGM SLCLALMFVS SWYYALVAML IAGMIYKYIE YQGAEKEWGD BACU018125/1-968 YHWALSFLGM SLCLALMFVS SWYYALVAML IAGMIYKYIE YQGAEKEWGD bmy_05241T0/1-1116 YHWALSFLGM SLCLALMFVS SWYYALVAML IAGMIYKYIE YQGAEKEWGD 701 750 ENSP00000395983/1-1087 GIRGLSLSAA RYALLRLEEG PPHTKNWRPQ LLVLLKLDED LHVKYPRLLT ENSTTRP00000008780/1-1086 GIRGLSLSAA RYALLRLEEG PPHTKNWRPQ LLVLLKLDED LHVKYPRLLT ENSBTAP00000024019/1-1086 GIRGLSLSAA RYALLRLEEG PPHTKNWRPQ LLVLLKLDED LHVKYPRLLT BACU018125/1-968 GIRGLSLSAA RYALLRLEEG PPHTKNWRPQ LLVLLKLDED LHVKYPRLLT bmy_05241T0/1-1116 GIRGLSLSAA RYALLRLEEG PPHTKNWRPQ LLVLLKLDED LHVKYPRLLT 751 800 ENSP00000395983/1-1087 FASQLKAGKG LTIVGSVIQG SFLESYGEAQ AAEQTIKNMM EIEKVKGFCQ ENSTTRP00000008780/1-1086 FASQLKAGKG LTIVGSVIQG SFLESYGEAQ AAEQTIKNMM EIEKVKGFCQ ENSBTAP00000024019/1-1086 FASQLKAGKG LTIVGSVIQG SFLESYGEAQ AAEQTIKNMM EIEKVKGFCQ BACU018125/1-968 FASQLKAGKG LTIVGSVIQG SFLESYGEAQ AAEQTIKNMM EIEKVKGFCQ bmy_05241T0/1-1116 FASQLKAGKG LTIVGSVIQG SFLESYGEAQ AAEQTIKNMM EIEKVKGFCQ 801 850 ENSP00000395983/1-1087 VVVASKVREG LAHLIQSCGL GGMRHNSVVL GWPYGWRQSE DPRAWKTFID ENSTTRP00000008780/1-1086 VVVASKVREG LAHLIQSCGL GGMRHNSVVL GWPYGWRQSE DPRAWKTFID ENSBTAP00000024019/1-1086 VVVASKVREG LAHLIQSCGL GGMRHNTVVL GWPYGWRQSE DPRAWKTFID BACU018125/1-968 VVVASKVREG LAHLIQSCGL GGMRHNSVVL GWPYGWRQSE DPRAWKTFID bmy_05241T0/1-1116 VVVASKVREG LAHLIQSCGL GGMRHNSVVL GWPYGWRQSE DPRAWKTFID 851 900 ENSP00000395983/1-1087 TVRCTTAAHL ALLVPKNIAF YPSNHERYLE GHIDVWWIVH DGGMLMLLPF ENSTTRP00000008780/1-1086 TVRCTTAAHL ALLVPKNIAF YPSNHERYLE GHIDVWWIVH DGGMLMLLPF ENSBTAP00000024019/1-1086 TVRCTTAAHL ALLVPKNIAF YPSNHERYLE GHIDVWWIVH DGGMLMLLPF BACU018125/1-968 TVRCTTAAHL ALLVPKNIAF YPSNHERYLE GHIDVWWIVH DGGMLMLLPF bmy_05241T0/1-1116 TVRCTTAAHL ALLVPKNIAF YPSNHERYLE GHIDVWWIVH DGGMLMLLPF 901 950 ENSP00000395983/1-1087 LLRQHKVWRK CRMRIFTVAQ MDDNSIQMKK DLAVFLYHLR LEAEVEVVEM ENSTTRP00000008780/1-1086 LLRQHKVWRK CRMRIFTVAQ MDDNSIQMKK DLAVFLYHLR LEAEVEVVEM ENSBTAP00000024019/1-1086 LLRQHKVWRK CRMRIFTVAQ MDDNSIQMKK DLAIFLYHLR LEAEVEVVEM BACU018125/1-968 LLRQHKVWRK CRMRIFTVAQ MDDNSIQMKK DLAVFLYHLR LEAEVEVVEM bmy_05241T0/1-1116 LLRQHKVWRK CRMRIFTVAQ MDDNSIQMKK DLAVFLYHLR LEAEVEVVEM 951 1000 ENSP00000395983/1-1087 HNSDISAYTY ERTLMMEQRS QMLRQMRLTK TEREREAQLV KDRHSALRLE ENSTTRP00000008780/1-1086 HNSDISAYTY ERTLMMEQRS QMLRQMRLTK TEREREAQLV KDRHSALRLE ENSBTAP00000024019/1-1086 HNSDISAYTY ERTLMMEQRS QMLRQMRLTK TEREREAQLV KDRHSALRLE BACU018125/1-968 HNSDISAYTY ERTLMMEQRS QMLRQMRLTK TEREREAQLV KDRHSALRLE bmy_05241T0/1-1116 HNSDISAYTY ERTLMMEQRS QMLRQMRLTK TEREREAQLV KDRHSALRLE 1001 1050 ENSP00000395983/1-1087 SLYSDEEDES AVGADKIQMT WTRDKYM-TE TWDPSHAPDN FRELVHIKPD ENSTTRP00000008780/1-1086 SLYSDEEEES AAGTDKIQMT WTRDKYMAAE PWDPSHAPDN FRELVHIKPD ENSBTAP00000024019/1-1086 SLYSDEEDES AAGTDKIQMT WTRDKYMATE PWDPSHTPDN FRELVHIKPD BACU018125/1-968 SLYSDEEEES AAGTDKIQMT WTRDKYMAAE PWDPSHAPDN FRELVHIKPD bmy_05241T0/1-1116 SLYSDEEEES AAGTDKIQMT WTRDKYMAAE PWDPSHAPDN FRELVHIKPD 1051 1100 ENSP00000395983/1-1087 QSNVRRMHTA VKLNEVIVTR SHDARLVLLN MPGPPRNSEG DENYMEFLEV ENSTTRP00000008780/1-1086 QSNVRRMHTA VKLNEVIVTR SHDARLVLLN MPGPPKNSEG DENYMEFLEV ENSBTAP00000024019/1-1086 QSNVRRMHTA VKLNEVIVTR SHDARLVLLN MPGPPKNSEG DENYMEFLEV BACU018125/1-968 QSNVRRMHTA VKLNEVIVTR SHDARLVLLN MPGPPKNSEG DENCIPL--- bmy_05241T0/1-1116 QSNVRRMHTA VKLNEVIVTR SHDARLVLLN MPGPPKNSEG DENYMEFLEV 1101 1150 ENSP00000395983/1-1087 LTEGLERVLL VRGGGREVIT IYS ENSTTRP00000008780/1-1086 LTEGLERVLL VRGGGREVIT IYS ENSBTAP00000024019/1-1086 LTEGLERVLL VRGGGREVIT IYS BACU018125/1-968 ---------- ---------- --- bmy_05241T0/1-1116 LTEGLERVLL VRGGGREVIT IYS