KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:22:02 2014 Check: 00 .. Name: ENSP00000264246/1-288 Len: 298 Check: 6556 Weight: 1.00 Name: ENSBTAP00000024042/1-296 Len: 298 Check: 4211 Weight: 1.00 Name: ENSTTRP00000013645/1-288 Len: 298 Check: 8538 Weight: 1.00 Name: bmy_11743T0/1-271 Len: 298 Check: 3296 Weight: 1.00 Name: BACU009302/1-238 Len: 298 Check: 5497 Weight: 1.00 // 1 50 ENSP00000264246/1-288 MGHTRRQGTS PSKCPYLNFF QLLVLAGLSH FCSGVI--HV TKEVKEVATL ENSBTAP00000024042/1-296 MGHTMKWGTL PPKRPCLWLS QLLVLTGLFY FCSGITPKSV TKRVKETVML ENSTTRP00000013645/1-288 MDHTLKWG-I PSKRPYLKLF QLLVLAGLFY FCSGII--QV TKTVKEAAML bmy_11743T0/1-271 MDHTLKWGTL PPKRPYLKPF QLLVLAGLFY FCSGII--QV TKTVKEAAML BACU009302/1-238 MDHTLKWGTL PPKRPYLKPF QLLVLAGLFY FCSGVM--QV TKTVKEAAML 51 100 ENSP00000264246/1-288 SCGHNVSVEE LAQTRIYWQK EKKMVLTMMS GDMNIWPEYK NRTIFDITNN ENSBTAP00000024042/1-296 SCDYNTSTEE LTSLRIYWQK DSKMVLAILP GKVQVWPEYK NRTITDMNDN ENSTTRP00000013645/1-288 SCDYNISTEE LKRVRIYWQK DNEMVLAVMS GKVTVWPRYE NRTITDVTSN bmy_11743T0/1-271 SCDYNISTEE LKRVRIYWQK DNEMVLAVMS GKVKVWPKYE NRTITDVTNN BACU009302/1-238 SCDYNISTEE LKRVRIYWQK DNEMVLAVMS GKVKVWPKYE NRTITDVTNN 101 150 ENSP00000264246/1-288 LSIVILALRP SDEGTYECVV LKYE-KDAFK REHLAEVTLS VKADFPTPSI ENSBTAP00000024042/1-296 PRIVILALRL SDSGTYTCVI QKPDLKGAYK LEHLTSVRLM IRADFPVPTI ENSTTRP00000013645/1-288 LCIVILALRL SDNGTYTCVI QKPE-KGSYK LKHRTSVKLM VRADFPVPSI bmy_11743T0/1-271 LCIVILALRL SDNGTYTCVI QKPE-KGSYK LEHLTSVKLM VRADFPVPSI BACU009302/1-238 LCIVILALRL SDNGTYTCVI QKAE-KGSYK LEHLTSVKLM IRADFPVPSI 151 200 ENSP00000264246/1-288 SDFEIPTSNI RRIICSTSGG FPEPHLSWLE NGEELNAINT TVSQDPETEL ENSBTAP00000024042/1-296 NDLGNPSPNI RRLICSTSGG FPRPHLYWLE NGEELNATNT TLSQDPETKL ENSTTRP00000013645/1-288 TDLGNPSPNN RRIICSTSGG FPKPHLSWLE NGEELNSTNT TLSQDPETEL bmy_11743T0/1-271 TDLGNPSPNI RRIICSTSGG FPKPHLSWLE NGEELNATNT TLSQDPETEL BACU009302/1-238 TDLGNPSPNI RRIICSTSGG FPKPHLSWLE NGEELNATNT TLSQDPETEL 201 250 ENSP00000264246/1-288 YAVSSKLDFN MTTNHSFMCL IKYGHLRVNQ TFNWNTTKQE HFPDNLLPSW ENSBTAP00000024042/1-296 YMISSELDFN MTSNHSFLCL VKYGDLTVSQ TFYWQE-SKP TPSANQHLTW ENSTTRP00000013645/1-288 YTISSELDFN MTSNHSFVCL VKYGGLTVSQ TFNWQK-SKP APSANQLLLW bmy_11743T0/1-271 YTISSELDFN MTSNHSFACL VKYGGSTVSQ TFNWQKSAKP APSANQLLLW BACU009302/1-238 YTISSELDFN MTSNHSFACL VKYGGLTVSQ TFNWQK---- ---------- 251 300 ENSP00000264246/1-288 AITL-ISVNG IFV-----IC CLTYCFAPRC RERRRNERLR RESVRPV- ENSBTAP00000024042/1-296 TIIIPVSAFG ISVIIAVILT CLTCRNAAIR RQRRENEVEM ESCSQSP- ENSTTRP00000013645/1-288 AIIIPVSACG ISV-----IC CLSCRHAARW RERRRNQRAW KWEGFPHL bmy_11743T0/1-271 AIIIPVSACG ISVIIAVTLT CLSC------ ---------- -------- BACU009302/1-238 --------CP TSI------- ---------- ---------- --------