KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:22:06 2014 Check: 00 .. Name: ENSP00000316335/1-451 Len: 572 Check: 6424 Weight: 1.00 Name: ENSBTAP00000024059/1-446 Len: 572 Check: 9102 Weight: 1.00 Name: ENSTTRP00000000058/1-454 Len: 572 Check: 4097 Weight: 1.00 Name: bmy_11677T0/1-534 Len: 572 Check: 9850 Weight: 1.00 Name: BACU005124/1-326 Len: 572 Check: 650 Weight: 1.00 // 1 50 ENSP00000316335/1-451 ---------- ---------- ---------- ---------- --MVGSALRR ENSBTAP00000024059/1-446 ---------- ---------- ---------- ---------- --MVCWALRR ENSTTRP00000000058/1-454 ---------- ---------- ---------- ---------- --MVCWALRR bmy_11677T0/1-534 MSRLRLTITT AIAMLLYFSE ILLQPHTVSC ACSTEPVKEV AAMVGWALRR BACU005124/1-326 ---------- ---------- --------MC VLFPEPVKEV AARAGWALRR 51 100 ENSP00000316335/1-451 GAHAYVYLVS KASHISRGHQ HQAWGSRPPA AECATQRAPG S---VVELLG ENSBTAP00000024059/1-446 VGLARAHLAR KASGVCRGHE HQPLGPRPAA P-----GAPG S---AVELLG ENSTTRP00000000058/1-454 AAQVRVHLAR KASGVCRGPE HQASGARPAA PEPATRGALG ALGGTVELLG bmy_11677T0/1-534 AAQVCVHLAR KASGVCRGPE HQALGARPAA PEPAGRGAPG APRGAVELLG BACU005124/1-326 AAQVHVHLAR KASGVCRGPE HQALGARPTA LEPAGRGAPG APGGAVELLG 101 150 ENSP00000316335/1-451 KSYPQDDHSN LTRKVLTRVG RNLHNQQHHP LWLIKERVKE HFYKQYVGRF ENSBTAP00000024059/1-446 KSYPQDDYSN LTRKVLSKVG RNLHNQPQHP LWLLKERVKQ HFYAQYPGRA ENSTTRP00000000058/1-454 KSYPQDGYSN LSRKVLSRVG RNLHNRPHHP LWLIKERVKQ HFYAQYVGRS bmy_11677T0/1-534 KSYPQDGYSN LSRKVLSRVG RNLHNRPYHP LWLIKERVKQ HFYARYVGRS BACU005124/1-326 KSYARDGYSN LSRKVLSRVG RNLHNRPHHP LWLIKERVKQ HFYARYVGRS 151 200 ENSP00000316335/1-451 GTPLFSVYDN LSPVVTTWQN FDSLLIPADH PSRKKGDNYY LNRTHMLRAH ENSBTAP00000024059/1-446 GTPLFSVYDD LSPVVTTWQN FDSLLIPADH PSRKKGDNYF LNATHMLRAH ENSTTRP00000000058/1-454 GTPLFSVYDD LSPVVTTWQN FDSLLVPADH PSRKKGDSYY LNATHMLRAH bmy_11677T0/1-534 GTPLFSVYDD LSPVVTTWQN FDSLLVPADH PSRKKGDSYY LNATHMLRAH BACU005124/1-326 GTPLFSVYDD LSPVVTTWQN FDSLLVPADH PSRKKGDSYY LNATHMLRAH 201 250 ENSP00000316335/1-451 TSAHQWDLLH AGLDAFLVVG DVYRRDQIDS QHYPIFHQLE AVRLFSKHE- ENSBTAP00000024059/1-446 TSAHQWDLLR AGLDAFLVVG DVYRRDQIDA QHYPVFHQLE AVRLFSRHQ- ENSTTRP00000000058/1-454 TSAHQWDLLR TGLDAFLVVG DVYRRDQIDA QHHPVFHQLE AVRLFSRHQ- bmy_11677T0/1-534 TSAHQWDLLR AGLDAFLVVG DVYRRDQIDA QHHPVFHQLE AVRLFSRHQS BACU005124/1-326 TSAHQWDLLR AGLDAFLVVG DVYRRDQIDA QHHPVFHQLE GVRLFSRHQ- 251 300 ENSP00000316335/1-451 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024059/1-446 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000058/1-454 ---------- ---------- ---------- ---------- ---------- bmy_11677T0/1-534 RRACLCVSPC EWVVSGSHLP QSRMTRDAAL RPVVWLPQTR MTRDAALRPV BACU005124/1-326 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000316335/1-451 ---------- ---------- ----LFAGIK DGESLQLFEQ SSRSAHKQET ENSBTAP00000024059/1-446 ---------- ---------- ----LFAGIK DGENLQLFEQ SSRSAHKQET ENSTTRP00000000058/1-454 ---------- ---------- ----LFAGVK DGENLQLFEQ SSRSAHKQET bmy_11677T0/1-534 VWLPQTRMTR DAALRPVVWL PQISLFAGIK DGENLQLFEQ SSRSAHKQET BACU005124/1-326 ---------- ---------- ----LFAGIK DGENLQLFEQ SSRSARKQET 351 400 ENSP00000316335/1-451 HTMEAVKLVE FDLKQTLTRL MAHLFGDELE IRWVDCYFPF THPSFEMEIN ENSBTAP00000024059/1-446 HTLEATKLVE FDLKQTLTRL MTHIFGDGLD VRWVDCYFPF THPSFEMEIN ENSTTRP00000000058/1-454 HTLEATKLVE FDLKQTLTRL MTHLFGDGLD IRWVDCYFPF THPSFEMEIN bmy_11677T0/1-534 HTLEATKLVE FDLKQTLTRL MTHLFGDGLD IRWVDCYFPF THPSFEMEIS BACU005124/1-326 HTLEATKLVE FDLKQTLTRL MTHLFGDGLD IRWVDCYFPF THPSFEMEIS 401 450 ENSP00000316335/1-451 FHGEWLEVLG CGVMEQQLVN SAGAQDRIGW AFGLGLERLA MILYDIPDIR ENSBTAP00000024059/1-446 FHGEWLEVLG CGVMEQQLVN SAGAQDRIGW AFGLGLERLA MILYDIPDIR ENSTTRP00000000058/1-454 FHGEWLEILG CGVMEQRLVN SAGAEDQIGW AFGLGLERLA MVLYDIPDIR bmy_11677T0/1-534 FHGEWLEILG CGVMEQQLVN SD-------- ------KRFA GILGFPPGAH BACU005124/1-326 FHGEWLEILG CGVMEQQLVN SG-------- ---------- ---------- 451 500 ENSP00000316335/1-451 LFWCEDERFL KQFCVSNINQ KVKFQPLSKY PAVINDISFW LPSENYAEND ENSBTAP00000024059/1-446 LFWSQDERFL KQFRVPDINQ KVTFQPLSKY PAVINDISFW LPRENYTEND ENSTTRP00000000058/1-454 LFWSEDERFL KQFCVQDINQ KVKFQPLSKY PAVINDISFW LPRENYTEND bmy_11677T0/1-534 DVRGQNSESK SGGRICSANR AL----LAEK PPAAERVCF- ---------- BACU005124/1-326 RIWSRNI--- ---------- ---------- ---------- ---------- 501 550 ENSP00000316335/1-451 FYDLVRTIGG DLVEKVDLID -KFVHPKTHK TSHCYRITYR HMERTLSQRE ENSBTAP00000024059/1-446 FYDLVRTIGG DLVEKVDLID -KFEHPKTHR TSHCYRITYR HMERTLSQRE ENSTTRP00000000058/1-454 FYDLVRTIGG DLVEKVDLID -KFEHPKTHR TSHCYRITYR HMERTMSQRE bmy_11677T0/1-534 --------GS SKVPELRWRE TQIPLPWLPR GCRVSSAHGR PARAAVSSRH BACU005124/1-326 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000316335/1-451 VRHIHQALQE AAVQLLGVEG RF ENSBTAP00000024059/1-446 VGGIHQAVQE AAVRQLGVEG RF ENSTTRP00000000058/1-454 VGRVHQAVQE AAVRLLGVEG RF bmy_11677T0/1-534 SSRVCSRRRC PGSPPLG-PG LA BACU005124/1-326 ---------- ---------- --