KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:22:07 2014 Check: 00 .. Name: ENSP00000244333/1-346 Len: 368 Check: 6590 Weight: 1.00 Name: ENSBTAP00000024068/1-358 Len: 368 Check: 245 Weight: 1.00 Name: ENSTTRP00000013992/1-351 Len: 368 Check: 3152 Weight: 1.00 Name: bmy_15984T0/1-345 Len: 368 Check: 8739 Weight: 1.00 Name: BACU020242/1-345 Len: 368 Check: 8649 Weight: 1.00 // 1 50 ENSP00000244333/1-346 MDPARKAGAQ AMIWTAGWLL LL---LLRGG AQALECYSCV QKADDGCSPN ENSBTAP00000024068/1-358 MDPARKAGSW AVIWTTGWLL LL-SLLLPEG AKALECYSCV QNADDGCSPQ ENSTTRP00000013992/1-351 MDPARKAGSR VAIWATGWLL LLPPLLLLEG AQALECYSCV QKADDGCSPQ bmy_15984T0/1-345 MDPARKAGSR VAIWTTGWLL LLPPLLLLEG AQALECYSCV QKADDGCSPR BACU020242/1-345 MDPARKAGSR VAIWTTGWLL LLPPLLLLEG AQALECYSCV QKADDGCSPQ 51 100 ENSP00000244333/1-346 KMKTVKCAPG VDVCTEAVGA VETIHGQFSL AVRGCGSGLP GKNDRGLDLH ENSBTAP00000024068/1-358 KMKTVKCAPG VEVCTEAVGA VETIHGQFSV AVRGCGSGIP GKNDRGLDLY ENSTTRP00000013992/1-351 KTKTVKCAPG MDVCTEAVGA VESIHGQFSV AVRGCGSGLP GKNDRGLDLY bmy_15984T0/1-345 KTKTVKCAPG VDVCTEVVGA VETIHGQFSV AVRGCGSGLP GKNDRGLDLY BACU020242/1-345 KTKTVKCAPG VDVCTEVVGA VETIHGQFSV AVRGCGSGLP GKNDRGLDLY 101 150 ENSP00000244333/1-346 GLLAFIQLQQ CAQDRCNAKL NLTSRALDPA GNESAYPPNG VECYSCVGLS ENSBTAP00000024068/1-358 GILAFIQLQQ CSQDRCNTKL NLTSRGLNPA GNESAYQPNG VECYSCVGLS ENSTTRP00000013992/1-351 GILAFVQLHQ CSQDRCNAKL NLTSRALIPA GNESDYEPNG VECYSCVGLS bmy_15984T0/1-345 GILAFVQLQQ CSQDRCNAKF NLTSQALIPA GNESDYEPNG AECYSCVGLS BACU020242/1-345 GILAFVQLQQ CSQDRCNAQL DLTSRALIPA GNESDYEPNG AECYSCVGLS 151 200 ENSP00000244333/1-346 REACQGTSPP VVSCYNASDH VYKGCFDGNV TLTAANVTVS LPVRGCVQDE ENSBTAP00000024068/1-358 RKECQGRAPP VVSCYNASDH FYKGCFDGNV TLTAANVTVS LPVRGCVQDE ENSTTRP00000013992/1-351 RKECQGTAPP VVRCYNASDH LYKGCFDGNV TLTAANVTVS LPVRGCVQDE bmy_15984T0/1-345 RKECQGTAPP VVRCYNASDH IYRGCFDGNV TLTAANVTVS LPVRGCVQDE BACU020242/1-345 RKECQGTAPP VVRCYNASDH VYRGCFDGNV TLTAANVTVS LPVRGCVQDE 201 250 ENSP00000244333/1-346 FCTRDGVTGP GFTLSGSCCQ GSRCNSDLRN KTYFSPRIPP LVRLPPPEPT ENSBTAP00000024068/1-358 FCTRDSATGP GFTLSGSCCQ GSRCNSDLRN KTYFSPRFPP LVLLPPPRST ENSTTRP00000013992/1-351 SCTRDSATGP GFTLSGSCCQ GSRCNSDLRN KTYFSSKFPP LVLLPRPPST bmy_15984T0/1-345 SCTRDSATGP GFTLSGSCCQ GSRCNSDLRN KTYFSPRFPP LVLLPRPPST BACU020242/1-345 SCTRDSATGP GFTLSGSCCQ GSRCNSDLRN KTYFSPRFPP LVLLPRPPST 251 300 ENSP00000244333/1-346 TVASTTSVTT STSAPVR--- --PTSTTKPM PAPTS----- ---------Q ENSBTAP00000024068/1-358 TLAPNKSVST STSAPSS--- ---TVTTKAT PVPTTTRSTT KAITPAQTNQ ENSTTRP00000013992/1-351 TLAANNSVST SAPTLASTST TKPTSTTKPT PAPAS----- ---------Q bmy_15984T0/1-345 TLAANNSVST SAPALSS--- ---TSTTKPT PAPTS----- ---------Q BACU020242/1-345 TLAANKSVST SAPALSS--- ---TFTTKPT PAPTS----- ---------Q 301 350 ENSP00000244333/1-346 TPRQGVEHEA SRDEEPRLTG GAAGHQDRSN SGQYPAKGGP QQPHNKGCVA ENSBTAP00000024068/1-358 TSPQEVGHET FREEEASLAG GASGHQDRRN TGQDPIKDV- --THSKGSAA ENSTTRP00000013992/1-351 TSPKEVEPET SQVEESTSAG GTSGHQDRRN IGQYPIKDG- --PPNKGSAA bmy_15984T0/1-345 TSPKEVEPET SQEEESTSAG GTTGHQDRRN IGQYPTKDG- --AYNKGSAA BACU020242/1-345 TSPKEVEPET SQEEVSTSAG GASGHQDRRN IGQYPTKDG- --AYNKGSAA 351 400 ENSP00000244333/1-346 PTAGLAALLL AVAAGVLL ENSBTAP00000024068/1-358 PWAGWVTLLL AMAAGALL ENSTTRP00000013992/1-351 PSVGWVALLL AVATVTLL bmy_15984T0/1-345 PSVGWVALLL AVAAGTLL BACU020242/1-345 PSVGWVALLL AVAAGTLL