KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:22:09 2014 Check: 00 .. Name: ENSP00000282030/1-1596 Len: 1599 Check: 1113 Weight: 1.00 Name: ENSBTAP00000024078/1-1416 Len: 1599 Check: 2814 Weight: 1.00 Name: ENSTTRP00000013729/1-1544 Len: 1599 Check: 876 Weight: 1.00 Name: bmy_13676T0/1-1237 Len: 1599 Check: 1857 Weight: 1.00 Name: BACU009002/1-936 Len: 1599 Check: 7866 Weight: 1.00 // 1 50 ENSP00000282030/1-1596 MESRETLSSS RQRGGESDFL PVSSAKPPAA PGCAGEPLLS TPGPGKGIPV ENSBTAP00000024078/1-1416 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013729/1-1544 ---------- ---------- ---------- ---------- ---------- bmy_13676T0/1-1237 ---------- ---------- ---------- ---------- ---------- BACU009002/1-936 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000282030/1-1596 GGERMEPEEE DELGSGRDVD SNSNADSEKW VAGDGLEEQE FSIKEANFTE ENSBTAP00000024078/1-1416 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013729/1-1544 ----MEPEEE DELGSGRDVD SNSNADSEKW VAGDGLEEQE FSIKEANFTE bmy_13676T0/1-1237 ----MGIRGE DSSFTTKPLC VLQYTDLEKW RGVDD-KGRD FSIFAKNEME BACU009002/1-936 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000282030/1-1596 GSLKLKIQTT KRAKKPPKNL ENYICPPEIK ITIKQSGDQK VSRAGKNSKA ENSBTAP00000024078/1-1416 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013729/1-1544 GSLKLKIQTT KRAKKPPKNL ENYICPPEIK ITIKQSGDQK VSRAGKNSKA bmy_13676T0/1-1237 ---------- ---------- ---------- ---------- ----PMSTAV BACU009002/1-936 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000282030/1-1596 TKEEERSHSK KKLLTASDLA ASDLKGFQPQ AYERPQKHST LHYDTGLPQD ENSBTAP00000024078/1-1416 ---------- ---------- ---------- AYERPQKHSA LHYDPGLPQD ENSTTRP00000013729/1-1544 TKEEERSHSK KKLLPASDLA ASDLKGFQPQ AYERPQKHSA LHYDPGLPQD bmy_13676T0/1-1237 PFENIHAFSQ ENMVPNELL- ---------- AYERPQKHSA LHYDPGLPQD BACU009002/1-936 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000282030/1-1596 FTGDTLKPKH QQKSSSQNHM DWSTNSDSGP VTQNCFISPE SGRETASTSK ENSBTAP00000024078/1-1416 FTSDTLKPKH QQKSSSQNHM DWSTNSDNGP ATQNCFISPE SGRETASTSK ENSTTRP00000013729/1-1544 FTGDTLKPKH QQKSSSQNHV DWSTNSDNGP ATQNCFISTE SGRETASTSK bmy_13676T0/1-1237 FTGDTLKPKH QQKSSSQNHV DWSTNSDNGP ATQNCFISTE SGRETASTSK BACU009002/1-936 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000282030/1-1596 IPALEPVASF AKAQGKKGSA GNTWSQLSNN NKDLLLGGVA PSPSSHSSPA ENSBTAP00000024078/1-1416 IPALEPMASF AKAQGKKGSA GSTWNQLPNS NKDLLLGGVV PSPSNHSSPA ENSTTRP00000013729/1-1544 IPALEPLASF AKAQGKKGSA GSTWSQLSNS SKDLLLGGVV SSPSNHSSPA bmy_13676T0/1-1237 IPALEPLASF AKAQGKKGSA GSTWSQLSNS SKDLLLGGVV PSPSNHSSPA BACU009002/1-936 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000282030/1-1596 PPSSSAECNG LQPLVDQDGG GTKEPPEPP- TVGSKKKSSK KDVISQTIPN ENSBTAP00000024078/1-1416 PPSSSAECSG IQPLVDQDGG STKEPLEPP- TISSKKKSSK KDVISQTIPN ENSTTRP00000013729/1-1544 PPSSSAECSG LQPLVDQDGG GAKEPPEPPT TIGSKKKSSK KDVISQTIPN bmy_13676T0/1-1237 PPSSSAECSG LQPLVDQDGG GAKEPPEPPA TIGSKKKSSK KDVISQTIPN BACU009002/1-936 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000282030/1-1596 PDLDWVKNAQ KAFDNTEGKR EGYSADSAQE ASPARQNVSS ASNPENDSSH ENSBTAP00000024078/1-1416 SDLDWVKNAQ KAFDSTEGKR EGYSADSAQE ASPARQNVSS VSNPENDSSH ENSTTRP00000013729/1-1544 SDLDWVKNAQ KAFDNTEGKR EGYSADNAQE ASPVRQNVSS VSNPENDSSH bmy_13676T0/1-1237 SDLDWVKNAQ KAFDNTEGKR EGYSADNAQE ASPVRQNVSS VSNPENDSSH BACU009002/1-936 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000282030/1-1596 VRITIPIKAP SLDPTNHKRK KRQSIKAVVE KIMPEKALAS GITMSSEVVN ENSBTAP00000024078/1-1416 VRITIPIKAP CLDPSSHKRK KRQSIKAVVE KIMPEKALTS GITMSSEVVN ENSTTRP00000013729/1-1544 VRITIPIKAP CLDPSSHKRK KRQSIKAVVE KIMPEKALAS GITMSSEVVN bmy_13676T0/1-1237 VRITIPIKAP CLDPSSHKRK KRQSIKAVVE KIMPEKALAS GITMSSEIVN BACU009002/1-936 ---------- ---------- ---------- --MPEKALAS GITMSSEVVN 451 500 ENSP00000282030/1-1596 RILSNSEGNK KDPRVPKLSK MIENESPSVG LETGGNAEKV IPGGVSKPRK ENSBTAP00000024078/1-1416 RIFSNPEGNK KDPRVPKLGK MMENESPSAG LETGVNAEKV VPGGVPKQRK ENSTTRP00000013729/1-1544 RILSNPEGNK KDPRVPKLGK MIENESPSAG LETGGNAEKV VPGGVSKQRK bmy_13676T0/1-1237 RILSNPEGNK KDPRVPKLGK MMENESPSAG LETGGNAEKV VPGGVSKQRK BACU009002/1-936 RILSNPEGNK KDPRVPKLGK MMENESPSAG LETGGNAEKV VPGGVSKQRK 501 550 ENSP00000282030/1-1596 PPMVMTPPTC TDHSPSRKLP EIQHPKFAAK RRWTCSKPKP STMLREAVMA ENSBTAP00000024078/1-1416 PPMVMTPPTC TDHSA-RKLP EIQHPKFAAK RRWTCSKPKP TSLLREAVMA ENSTTRP00000013729/1-1544 PPMVVTPPTC TDHSP-RKLP EIQHPKFAAK RRWTCSKPKP TSLLREAVMA bmy_13676T0/1-1237 PPMVMTPPTC TDHSP-RKLP EIQHPKFAAK RRWTCSKPKP TSLLREAVMA BACU009002/1-936 PPMVMTPPTC TDHSP-RKLP EIQHPKFAAK RRWTCSKPKP TSLLREAVMA 551 600 ENSP00000282030/1-1596 TSDKLMLEPP SAYPITPSSP LYTNTDSLTV ITPVKKKRGR PKKQPLLTVE ENSBTAP00000024078/1-1416 TSDKLMVEPP SAYPITPSSP LYTNTDSLTV ITPVKKKRGR PKKQPLLTVE ENSTTRP00000013729/1-1544 TSDKLMVEPP SAYPITPSSP LYTNTDSLTV ITPVKKKRGR PKKQPLLTVE bmy_13676T0/1-1237 TSDKLMVEPP SAYPITPSSP LYTNTDSLTV ITPVKKKRGR PKKQPLLTVE BACU009002/1-936 TSDKLMVEPP SAYPITPSSP LYTNTDSLTV ITPVKKKRGR PKKQPLLTVE 601 650 ENSP00000282030/1-1596 TIHEGTSTSP VSPISREFPG TKKRKRRRNL AKLAQLVPGE DKPMSEMKFH ENSBTAP00000024078/1-1416 TIHEGTSTSP VSPISREFPG TKKRKRRRSL AKLAQLVPGE DKPMSEMKFH ENSTTRP00000013729/1-1544 TIHEGTSTSP VSPISREFPG TKKRKRRRSL AKLAQLVPGE DKPMSEMKFH bmy_13676T0/1-1237 TIHEGTSTSP VSPISREFPG TKKRKRRRSL AKLAQLVPGE DKPMSEMKFH BACU009002/1-936 TIHEGTSTSP VSPISREFPG TKKRKRRRSL AKLAQLVPGE DKPMSEMKFH 651 700 ENSP00000282030/1-1596 KKVGKLGVLD KKTIKTINKM KTLKRKNILN QILSCSSSVA LKAKAPPETS ENSBTAP00000024078/1-1416 KKVGKLGVLD KKTIKTINKM KTLKRKNILN QILSCSSSIA LKAKAPPETS ENSTTRP00000013729/1-1544 KKVGKLGVLD KKTIKTINKM KTLKRKNILN QILSCSSSIA LKAKAPPETS bmy_13676T0/1-1237 KKVGKLGVLD KKTIKTINKM KTLKRKNILN QILSCSSSIA LKAKAPPETS BACU009002/1-936 KKVGKLGVLD KKTIKTINKM KTLKRKNILN QILSCSSSIA LKAKAPPETS 701 750 ENSP00000282030/1-1596 PGAAAIESKL GKQINVSKRG TIYIGKKRGR KPRAELPPPS EEPKTAIKHP ENSBTAP00000024078/1-1416 PGAAAIESKL GKQINVSKRG TIYIGKKRGR KPRAELPPPS EEPKTAIKHP ENSTTRP00000013729/1-1544 PGAAAIESKL GKQINVSKRG TIYIGKKRGR KPRAELPPPS EEPKTAIKHP bmy_13676T0/1-1237 PGAAAIESKL GKQINVSKRG TIYIGKKRGR KPRAELPPPS EEPKTAIKHP BACU009002/1-936 PGAAAIESKL GKQINVSKRG TIYIGKKRGR KPRAELPPPS EEPKTAIKHP 751 800 ENSP00000282030/1-1596 RPVSSQPDVP AVPSNFQSLV ASSPAAMHPL STQLGGSNGN LSPASTETNF ENSBTAP00000024078/1-1416 RPVSSQPDVP AVPSNLQSLV ASSPAAMHPL STQLGGSNGN LSPASTETNF ENSTTRP00000013729/1-1544 RPVSSQPDVP VVPSNFQSLV ASSPAAMHPL STQLGGSNGN LSPASTETNF bmy_13676T0/1-1237 RPVSSQPDVP VVPSNFQSLV ASSPAAMHPL STQLGGSNGN LSPASTETNF BACU009002/1-936 RPVSSQPDVP VVPSNFQSLV ASSPAAMHPL STQLGGSNGN LSPASTETNF 801 850 ENSP00000282030/1-1596 SELKTMPNLQ PISALPTKTQ KGIHSGTWKL SPPRLMANSP SHLCEIGSLK ENSBTAP00000024078/1-1416 SELKTMPNLQ PISALPTKTQ KGIHSGTWKL SPPRLMANSP SHLCEIGSLK ENSTTRP00000013729/1-1544 SELKTMPNLQ PISALPTKTQ KGIHSGTWKL SPPRLMANSP SHLCEIGSLK bmy_13676T0/1-1237 SELKTMPNLQ PISALPTKTQ KGIHSGTWKL SPPRLMANSP SHLCEIGSLK BACU009002/1-936 SELKTMPNLQ PISALPTKTQ KGIHSGTWKL SPPRLMANSP SHLCEIGSLK 851 900 ENSP00000282030/1-1596 EITLSPVSES HSEETIPSDS GIGTDNNSTS DQAEKSSESR RRYSFDFCSL ENSBTAP00000024078/1-1416 EITLSPVSES HSEETIPSDS GIGTDNNSTS DQAEKSSESR RRYSFDFCSL ENSTTRP00000013729/1-1544 EITLSPVSES HSEETIPSDS GIGTDNNSTS DQAEKSSESR RRYSFDFCSL bmy_13676T0/1-1237 EITLSPVSES HSEETIPSDS GIGTDNNSTS DQAEKSSESR RRYSFDFCSL BACU009002/1-936 EITLSPVSES HSEETIPSDS GIGTDNNSTS DQAEKSSESR RRYSFDFCSL 901 950 ENSP00000282030/1-1596 DNPEAIPSDT STKNRHGHRQ KHLIVDNFLA HESLKKPKHK RKRKSLQNRD ENSBTAP00000024078/1-1416 DNPEAIPSDT STKNRHGHRQ KHLIVDNFLA HESLKKPKHK RKRKSLQNRD ENSTTRP00000013729/1-1544 DNPEAIPSDT STKNRHGHRQ KHLIVDNFLA HESLKKPKHK RKRKSLQNRD bmy_13676T0/1-1237 DNPEAIPSDT STKNRHGHRQ KHLIVDNFLA HESLKKPKHK RKRKSLQNRD BACU009002/1-936 DNPEAIPSDT STKNRHGHRQ KHLIVDNFLA HESLKKPKHK RKRKSLQNRD 951 1000 ENSP00000282030/1-1596 DLQFLADLEE LITKFQVFRI SHRSYTFYHE NPYPSIFRIN FDHYYPVPYI ENSBTAP00000024078/1-1416 DLQFLADLEE LITKFQVFRI SHRSYTFYHE NPYPSIFRIN FDHYYPVPYI ENSTTRP00000013729/1-1544 DLQFLADLEE LITKFQVFRI SHRSYTFYHE NPYPSIFRIN FDHYYPVPYI bmy_13676T0/1-1237 DLQFLADLEE LITKFQVFRI SHRSYTFYHE NPYPSIFRIN FDHYYPVPYI BACU009002/1-936 DLQFLADLEE LITKFQVFRI SHRSYTFYHE NPYPSIFRIN FDHYYPVPYI 1001 1050 ENSP00000282030/1-1596 QYDPLLYLRR TSDLKSKKKR GRPAKTNDTM TKVPFLQGFS YPIPSGSYYA ENSBTAP00000024078/1-1416 QYDPLLYLRR TSDLKSKKKR GRPAKTNDTM TKVPFLQGFS YPIPSGSYYA ENSTTRP00000013729/1-1544 QYDPLLYLRR TSDLKSKKKR GRPAKTNDTM TKVPFLQGFS YPIPSGSYYA bmy_13676T0/1-1237 QYDPLLYLRR TSDLKSKKKR GRPAKTNDTM TKVPFLQGFS YPIPSGSYYA BACU009002/1-936 QYDPLLYLRR TSDLKSKKKR GRPAKTNDTM TKVPFLQGFS YPIPSGSYYA 1051 1100 ENSP00000282030/1-1596 PYGMPYTSMP MMNLGYYGQY PAPLYLSHTL GAASPFMRPT VPPPQFHTNS ENSBTAP00000024078/1-1416 PYGMPYTSMP MMNLGYYSQY PAPVYLSHTL GAASPFMRPT VPPPQFHTSS ENSTTRP00000013729/1-1544 PYGMPYTSMP MMNLGYYSQY PAPLYLSHTL GAASPFMRPT VPPPQFHTSS bmy_13676T0/1-1237 PYGMPYTSMP MMNLGYYSQY PAPLYLSHTL GAASPFMRPT VPPPQFHTSS BACU009002/1-936 PYGMPYTSMP MMNLGYYSQY PAPLYLSHTL GAASPFMRPT VPPPQFHTSS 1101 1150 ENSP00000282030/1-1596 HVKMSGAAKH KAKHGVHLQG PVSMGLGDMQ PSLNPPKVGS ASLSSGRLHK ENSBTAP00000024078/1-1416 HVKMSGTAKH KAKHGVHLQG PVGMGLGDRQ PSLNPPKVGS ASLSSGRLHK ENSTTRP00000013729/1-1544 HVKMSGTAKH KAKHGVHLQG PVGMGLGDRQ PSLNPPKVGS AGLSSGRLHK bmy_13676T0/1-1237 HVKMSGTAKH KAKHGVHLQG PVGMGLGDRQ PSLNPPKVGS AGLSSGRLHK BACU009002/1-936 HVKMSGTAKH KAKHGVHLQG PVGMGLGDRQ PSLNPPKVGS AGLSSGRLHK 1151 1200 ENSP00000282030/1-1596 RKHKHKHKHK EDRILGTHDN LSGLFAGKAT GFSSHILSER LSSADKELPL ENSBTAP00000024078/1-1416 RKHKHKHKHK EDRLLGTHDN LSGLFAGKAT GFSSHILSER LSSADKELSL ENSTTRP00000013729/1-1544 RKHKHKHKHK EDRLLGTHDN LSGLFAGKAT GFSSHILSER LSSADKELSL bmy_13676T0/1-1237 RKHKHKHKHK EDRLLGTHDN LSGLFAGKAT GFSSHILSER LSSADKELSL BACU009002/1-936 RKHKHKHKHK EDRLLGTHDN LSGLFAGKAT GFSSHILSER LSSADKELSL 1201 1250 ENSP00000282030/1-1596 VSEKNKHKEK QKHQHSEAGH KASKNNFEVD TLSTLSLSDA QHWTQAKEKG ENSBTAP00000024078/1-1416 VSEKNKHKEK QKHQHSEASH KASKNNFEVD TLSTLSLSDA QHWTQAKDKG ENSTTRP00000013729/1-1544 VSEKNKHKEK QKYQHSEASH KASKNNFEVD TLSTLSLSDA QHWTQAKDKG bmy_13676T0/1-1237 VSEKNKHKEK QKHQHSEAGH KVSKNNFEVD TLSTLSLSDA QHWTQAKDKG BACU009002/1-936 VSEKNKHKEK QKHQHSEAGH KASKNNFEVD TLSTLSLSDA QHWTQAKDKG 1251 1300 ENSP00000282030/1-1596 DLSSEPVDSC TKRYSGSGGD GGSTRSENLD VFSEMNPSND KWDSDVSGSK ENSBTAP00000024078/1-1416 DLSSEPADSC AKRYSGNGGD GGGARPESLD VFSEMNPPND KWDSDVSASK ENSTTRP00000013729/1-1544 DLSSEPVDSC TKRYSGNGGD GSSARPESLD VFSEMNPPND KWDSDVSGSK bmy_13676T0/1-1237 DLSSEPVDSC TKRYSGNGGD GSSARPESLD VFSEMNPPND KWDSDVSGCK BACU009002/1-936 DLSSEPVDSC TKRYSGNGGD GSSARPESLD VFSEMNPPND KWDSDVSGSK 1301 1350 ENSP00000282030/1-1596 RRSYEGFGTY REKDIQAFKM NRKERSSYDS SMSPGMPSPH LKVDQTAVHS ENSBTAP00000024078/1-1416 RRSYEGFGTY REKDIQAFKM NRKERSPYDS SVSPGIPSPH LKVDQTATHG ENSTTRP00000013729/1-1544 RRSYEGFGTY REKDIQAFKM NRKERSSYDS SLSPGIPSPH LKVDQTAAHS bmy_13676T0/1-1237 RRSYEGFGTY REKDIQAFKM NRKERSSYDS SLSPGK---- ---------- BACU009002/1-936 RRSYEGFGTY REKDIQAFKM NRKERSSYDS SLSPA----- ---------- 1351 1400 ENSP00000282030/1-1596 KNEGSVPTMM TRKKPAAVDS VTIPPAPVLS LLAASAATSD AVGSSLKKRF ENSBTAP00000024078/1-1416 KNESSASTVM TRKKPATVDS VAIPPAPVLS LLAASAATSD AASSSLKKRF ENSTTRP00000013729/1-1544 KNEGSASTMM TRKKPAAVDS VAIPPAPVLS LLAASAATSD AASSSLKKRF bmy_13676T0/1-1237 ---------- ---------- ---------- --AEFSSNLD CLAT------ BACU009002/1-936 ---------- ---------- ---------- --ADNGSHTD PGSERM---- 1401 1450 ENSP00000282030/1-1596 KRREIEAIQC EVRKMCNYTK ILSTKKNLDH VNKILKAKRL QRQSKTGNNF ENSBTAP00000024078/1-1416 KRREIEAIQC EVRKMCNYTK ILSTKKNLDH VNKILKAKRL QRQSKTGNNF ENSTTRP00000013729/1-1544 KRREIEAIQC EVRKMCNYTK ILSTKKNLDH VNKILKAKRL QRQSKTGNNF bmy_13676T0/1-1237 ---------- ---------- ---------- ---------- ---------- BACU009002/1-936 ---------- ---------T VFSEKRILDL ---------- ---------- 1451 1500 ENSP00000282030/1-1596 VKKRRGRPRK QPTQFDEDSR DQMPVLEKCI DLPSKRGQKP SLSPLVLEPA ENSBTAP00000024078/1-1416 VKKRRGRPRK QPTQFDEDSR DQMPVLEKCI DLPSKRGQKP SLSPLVLEPA ENSTTRP00000013729/1-1544 VKKRRGRPRK QPTQFDEDSR DQMPVLEKCI DLPSKRGQKP SLSPLVLEPA bmy_13676T0/1-1237 ---------- ---------- ---------- ---------- ---------- BACU009002/1-936 ---------- ---------- ---------- ---------- ---------- 1501 1550 ENSP00000282030/1-1596 ASQDTIMATI EAVIHMAREA PPLPPPPPPP L-PPPPPPPL PPPPPLPKTP ENSBTAP00000024078/1-1416 ASQDTIMATI EAVIHMAREA PPLPPPPPPP L-PPPPPPPP PPPPPLPKTP ENSTTRP00000013729/1-1544 ASQDTIMATI EAVIHMAREA PPLPPPPPPP LPPPPPPPPP PPPPPLPKTP bmy_13676T0/1-1237 ---------- ---------- ---------- ---------- ---------- BACU009002/1-936 ---------- ---------- ---------- ---------- ---------- 1551 1600 ENSP00000282030/1-1596 R-GGKRKHKP QAPAQPPQQS PPQQPLPQEE EVKAKRQRKS RGSESEVLP ENSBTAP00000024078/1-1416 RGGGKRKHKP QPPAQPPQQA PPPQPLPPEE EVKAKRQRKS RGSESDVLP ENSTTRP00000013729/1-1544 RGGGKRKHKP QPAAQPTQQP PPQQPLPQEE EVKAKRQRKS RGSESDVLP bmy_13676T0/1-1237 ---------- ---------- ---------- ---------- --------- BACU009002/1-936 ---------- ---------- ---------- -----NLREW RHSD-----